Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 4.8e-251 870.9 513 100.0
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 8.2e-235 817.0 512 93.9
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 2.4e-234 815.5 512 93.8
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 6.9e-234 813.9 512 92.8
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 1.2e-233 813.1 511 90.8
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 3.4e-233 811.6 511 90.0
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 4.5e-233 811.2 512 93.8
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 5.8e-233 810.8 512 88.9
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 7.6e-233 810.4 511 93.3
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 2.2e-232 808.9 511 89.4
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 3.8e-232 808.1 512 88.7
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 1.1e-231 806.6 513 92.6
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 1.4e-231 806.2 512 93.2
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 2.5e-231 805.4 513 92.6
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 4.2e-231 804.7 511 93.0
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 5.5e-231 804.3 511 89.0
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 7.1e-231 803.9 512 92.0
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 2.7e-230 802.0 512 92.4
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 3.5e-230 801.6 512 91.6
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 1.0e-229 800.0 512 91.6
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 1.8e-229 799.3 512 91.8
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.3e-229 798.9 512 91.4
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 2.3e-229 798.9 513 91.2
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 5.1e-229 797.7 512 91.2
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 8.7e-229 797.0 513 92.2
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 8.7e-229 797.0 512 92.0
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 1.5e-228 796.2 512 91.6
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 1.9e-228 795.8 512 87.9
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 2.5e-228 795.4 513 90.6
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 2.5e-228 795.4 509 87.0
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 4.3e-228 794.7 512 91.6
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 9.7e-228 793.5 513 86.4
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 1.3e-227 793.1 512 89.8
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 1.6e-227 792.7 511 92.4
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 2.2e-227 792.3 509 91.9
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 2.8e-227 792.0 512 91.6
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 8.2e-227 790.4 512 89.8
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 1.1e-226 790.0 512 90.6
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 6.9e-226 787.3 504 91.3
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 9.0e-226 786.9 511 89.8
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 1.2e-225 786.6 513 88.3
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 1.5e-225 786.2 512 90.0
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 2.0e-225 785.8 511 89.6
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 3.4e-225 785.0 512 90.0
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 4.5e-225 784.6 512 89.3
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 5.9e-225 784.3 513 85.6
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 7.7e-225 783.9 512 89.5
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 7.7e-225 783.9 513 90.3
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 1.0e-224 783.5 511 89.2
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 1.3e-224 783.1 512 90.0
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.7e-224 782.7 512 85.5
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 2.9e-224 781.9 512 89.3
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 2.9e-224 781.9 512 89.6
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 6.5e-224 780.8 512 90.4
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 8.5e-224 780.4 512 89.1
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 1.9e-223 779.2 513 84.2
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 2.5e-223 778.9 511 89.6
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 2.5e-223 778.9 512 89.5
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 3.2e-223 778.5 504 90.9
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 4.2e-223 778.1 512 89.8
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 5.5e-223 777.7 512 86.1
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 7.2e-223 777.3 536 83.2
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 7.2e-223 777.3 512 88.7
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 3.6e-222 775.0 512 88.9
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 3.0e-221 771.9 513 90.4
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 5.1e-221 771.2 513 85.8
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 6.7e-221 770.8 510 85.1
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 8.8e-221 770.4 517 88.2
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.0e-220 769.2 504 90.1
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 2.5e-220 768.8 512 85.0
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 2.5e-220 768.8 512 85.0
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 4.3e-220 768.1 527 78.4
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 1.3e-219 766.5 513 86.7
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 1.1e-218 763.5 511 86.7
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 1.1e-218 763.5 511 86.7
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 1.1e-218 763.5 512 88.7
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 1.4e-218 763.1 512 88.5
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 1.4e-218 763.1 504 88.9
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 1.8e-218 762.7 512 88.9
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 2.4e-218 762.3 513 86.4
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 3.1e-218 761.9 512 88.9
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 3.1e-218 761.9 504 87.7
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.5e-217 759.6 500 86.8
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 5.9e-217 757.7 511 88.6
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 1.0e-216 756.9 512 85.9
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 2.9e-216 755.4 540 80.7
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 7.2e-215 750.7 507 87.6
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 2.3e-213 745.7 512 83.6
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 4.8e-211 738.0 512 85.2
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 2.4e-210 735.7 520 83.8
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 1.7e-208 729.6 512 77.7
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.1e-207 726.9 485 89.1
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 1.5e-207 726.5 513 84.0
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 7.2e-207 724.2 508 86.6
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 2.3e-205 719.2 533 80.3
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 2.4e-202 709.1 512 75.8
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 4.1e-202 708.4 555 76.9
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 2.0e-201 706.1 512 79.5
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 2.0e-201 706.1 512 81.6
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 4.2e-199 698.4 462 93.3
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 1.6e-198 696.4 550 70.9
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 8.0e-198 694.1 512 80.3
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 6.8e-197 691.0 484 86.4
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 2.0e-196 689.5 523 81.3
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 2.0e-196 689.5 466 90.8
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 1.3e-192 676.8 513 71.9
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 3.1e-186 655.6 512 80.9
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 7.2e-183 644.4 430 91.9
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 1.4e-181 640.2 435 87.1
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 4.9e-179 631.7 428 88.6
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 6.6e-168 594.7 513 69.4
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 4.3e-159 565.5 414 85.5
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 6.8e-157 558.1 512 66.8
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 1.2e-137 494.2 267 90.3
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 3.6e-134 482.6 252 94.8
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 1.1e-127 461.1 322 85.7
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 1.6e-121 440.7 311 79.7
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 3.0e-112 409.8 383 59.8
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 2.2e-107 393.7 208 96.2
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 5.0e-107 392.5 208 95.7
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 1.4e-93 347.8 365 74.0
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.8e-78 297.0 257 77.4
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 3.7e-78 296.6 522 48.7
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 1.5e-71 274.6 206 77.7
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 3.6e-65 253.4 528 36.4
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 5.2e-64 249.6 131 96.2
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 2.2e-46 191.0 99 87.9
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 4.6e-44 183.3 148 63.5
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 1.7e-43 181.4 253 39.9
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 2.3e-40 171.0 80 98.8
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 1.5e-34 151.8 179 53.1
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 9.6e-34 149.1 78 93.6
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 1.6e-33 148.3 107 72.9
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 1.1e-32 145.6 137 61.3
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 9.9e-31 139.0 295 31.5
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 2.1e-28 131.3 70 88.6
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 1.5e-26 125.2 69 85.5
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 9.6e-26 122.5 64 85.9
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 9.6e-26 122.5 64 85.9
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 2.7e-20 104.4 57 80.7
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 7.9e-20 102.8 50 88.0
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 6.7e-19 99.8 56 76.8
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 8.1e-17 92.8 75 58.7
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 8.1e-17 92.8 75 58.7
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 2.4e-16 91.3 44 90.9
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 4.0e-16 90.5 47 95.7
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 4.5e-15 87.0 44 86.4
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 3.8e-14 84.0 134 73.9
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.9e-13 81.6 126 38.9
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 2.3e-11 74.7 107 41.1
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 3.0e-11 74.3 36 88.9
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 4.0e-08 63.9 60 58.3
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 1.5e-07 62.0 35 77.1
Lsat_1_v5_gn_3_52840 Lactuca sativa HOM05D004842 ORTHO05D005929 4.9e-06 57.0 35 71.4


User provided reference genes

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