Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc157.53 Carica papaya HOM05D006044 ORTHO05D007653 6.3e-64 247.3 125 100.0
Manes.01G177500 Manihot esculenta HOM05D006044 ORTHO05D007653 3.1e-63 245.0 125 98.4
Atru.chr3.2998 Acer truncatum HOM05D006044 ORTHO05D007653 4.1e-63 244.6 125 98.4
Nn7g36759 Nelumbo nucifera HOM05D006044 ORTHO05D007653 6.9e-63 243.8 125 98.4
Medtr5g089300 Medicago truncatula HOM05D006044 ORTHO05D007653 1.5e-62 242.7 125 96.8
TAR633G2719 Trochodendron aralioides HOM05D006044 ORTHO05D007653 1.5e-62 242.7 125 97.6
Glyma.02G278800 Glycine max HOM05D006044 ORTHO05D007653 2.0e-62 242.3 125 96.8
Phvul.008G202000 Phaseolus vulgaris HOM05D006044 ORTHO05D007653 2.0e-62 242.3 125 96.8
VMungo0647G0704 Vigna mungo HOM05D006044 ORTHO05D007653 2.0e-62 242.3 125 96.8
arahy.Tifrunner.gnm1.ann1.6RB8S0 Arachis hypogaea HOM05D006044 ORTHO05D007653 2.6e-62 241.9 125 96.8
arahy.Tifrunner.gnm1.ann1.L4QR06 Arachis hypogaea HOM05D006044 ORTHO05D007653 2.6e-62 241.9 125 96.8
CSS0014603 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 2.6e-62 241.9 125 96.8
Glyma.14G035900 Glycine max HOM05D006044 ORTHO05D007653 2.6e-62 241.9 125 96.0
TPR.G16400 Trifolium pratense HOM05D006044 ORTHO05D007653 2.6e-62 241.9 123 97.6
Psat2g020640 Pisum sativum HOM05D006044 ORTHO05D007653 4.5e-62 241.1 125 96.0
FvH4_4g01940 Fragaria vesca HOM05D006044 ORTHO05D007653 5.9e-62 240.7 125 96.0
FAN12G1761 Fragaria x ananassa HOM05D006044 ORTHO05D007653 5.9e-62 240.7 125 96.0
FAN22G1152 Fragaria x ananassa HOM05D006044 ORTHO05D007653 5.9e-62 240.7 125 96.0
THA.LOC104811201 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 5.9e-62 240.7 125 96.0
GSVIVG01037329001 Vitis vinifera HOM05D006044 ORTHO05D007653 5.9e-62 240.7 126 98.4
CANSAT11G0073 Cannabis sativa HOM05D006044 ORTHO05D007653 7.7e-62 240.4 123 96.7
LjContig00564g0010691 Lotus japonicus HOM05D006044 ORTHO05D007653 1.0e-61 240.0 123 96.7
THA.LOC104799136 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 1.0e-61 240.0 125 96.0
ATR0763G184 Amborella trichopoda HOM05D006044 ORTHO05D007653 1.3e-61 239.6 125 96.8
Ca_11896_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 1.7e-61 239.2 125 94.4
Gohir.A13G218400 Gossypium hirsutum HOM05D006044 ORTHO05D007653 1.7e-61 239.2 125 96.0
Gohir.D13G222100 Gossypium hirsutum HOM05D006044 ORTHO05D007653 1.7e-61 239.2 125 96.0
Gorai.013G253200 Gossypium raimondii HOM05D006044 ORTHO05D007653 1.7e-61 239.2 125 96.0
Nitab4.5_0000069g0030 Nicotiana tabacum HOM05D006044 ORTHO05D007653 1.7e-61 239.2 125 95.2
Nitab4.5_0011609g0020 Nicotiana tabacum HOM05D006044 ORTHO05D007653 1.7e-61 239.2 125 95.2
Lalb_Chr10g0106211 Lupinus albus HOM05D006044 ORTHO05D007653 2.2e-61 238.8 125 95.2
Lalb_Chr17g0347851 Lupinus albus HOM05D006044 ORTHO05D007653 2.2e-61 238.8 125 95.2
Thecc.09G247200 Theobroma cacao HOM05D006044 ORTHO05D007653 2.2e-61 238.8 125 95.2
Prupe.1G400800 Prunus persica HOM05D006044 ORTHO05D007653 2.9e-61 238.4 125 96.0
Ca_06201_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 3.8e-61 238.0 125 94.4
Potri.001G273200 Populus trichocarpa HOM05D006044 ORTHO05D007653 3.8e-61 238.0 123 96.7
Prupe.1G025000 Prunus persica HOM05D006044 ORTHO05D007653 3.8e-61 238.0 125 95.2
RcHm_v2.0_Chr4g0388901 Rosa chinensis HOM05D006044 ORTHO05D007653 3.8e-61 238.0 125 94.4
Peaxi162Scf00021g02522 Petunia axillaris HOM05D006044 ORTHO05D007653 5.0e-61 237.7 125 95.2
QL01p016848 Quercus lobata HOM05D006044 ORTHO05D007653 5.0e-61 237.7 124 94.4
ClCG02G022780 Citrullus lanatus HOM05D006044 ORTHO05D007653 6.5e-61 237.3 126 96.0
Ciclev10017186m.g Citrus clementina HOM05D006044 ORTHO05D007653 6.5e-61 237.3 125 95.2
COL.COLO4_24488 Corchorus olitorius HOM05D006044 ORTHO05D007653 6.5e-61 237.3 125 94.4
MELO3C014555.2 Cucumis melo HOM05D006044 ORTHO05D007653 6.5e-61 237.3 126 96.0
PSO339G3702 Papaver somniferum HOM05D006044 ORTHO05D007653 8.5e-61 236.9 125 96.0
PSO384G3308 Papaver somniferum HOM05D006044 ORTHO05D007653 8.5e-61 236.9 125 96.0
SEGI_07566 Sequoiadendron giganteum HOM05D006044 ORTHO05D007653 8.5e-61 236.9 125 96.0
PGR102G0082 Punica granatum HOM05D006044 ORTHO05D007653 1.1e-60 236.5 125 94.4
Lsat_1_v5_gn_2_28381 Lactuca sativa HOM05D006044 ORTHO05D007653 1.4e-60 236.1 123 94.3
CDE09G0744 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 1.9e-60 235.7 124 94.4
Lsat_1_v5_gn_2_111680 Lactuca sativa HOM05D006044 ORTHO05D007653 1.9e-60 235.7 123 94.3
MD08G1047500 Malus domestica HOM05D006044 ORTHO05D007653 2.5e-60 235.3 125 94.4
Aa31LG3G15040 Aethionema arabicum HOM05D006044 ORTHO05D007653 3.2e-60 235.0 125 93.6
Sc12g0010240 Simmondsia chinensis HOM05D006044 ORTHO05D007653 3.2e-60 235.0 125 93.6
TWI75G0655 Tripterygium wilfordii HOM05D006044 ORTHO05D007653 3.2e-60 235.0 125 94.4
Eucgr.B03747 Eucalyptus grandis HOM05D006044 ORTHO05D007653 5.5e-60 234.2 125 93.6
Oeu032567.1 Olea europaea HOM05D006044 ORTHO05D007653 5.5e-60 234.2 128 92.2
HanXRQChr14g0453721 Helianthus annuus HOM05D006044 ORTHO05D007653 7.2e-60 233.8 123 93.5
Cc03_g11600 Coffea canephora HOM05D006044 ORTHO05D007653 1.2e-59 233.0 127 92.9
HanXRQChr07g0196181 Helianthus annuus HOM05D006044 ORTHO05D007653 1.2e-59 233.0 123 93.5
MBI19_g20794_MAGBIO Magnolia biondii HOM05D006044 ORTHO05D007653 3.6e-59 231.5 125 95.2
Sabra09G0050500 Salix brachista HOM05D006044 ORTHO05D007653 3.6e-59 231.5 123 91.1
Potri.009G067500 Populus trichocarpa HOM05D006044 ORTHO05D007653 4.7e-59 231.1 121 94.2
Solyc01g008360.3 Solanum lycopersicum HOM05D006044 ORTHO05D007653 4.7e-59 231.1 125 92.8
Sopen01g003880 Solanum pennellii HOM05D006044 ORTHO05D007653 4.7e-59 231.1 125 92.8
PGSC0003DMG400016393 Solanum tuberosum HOM05D006044 ORTHO05D007653 4.7e-59 231.1 125 92.8
Hma1.2p1_0214F.1_g090800 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 1.0e-58 229.9 126 92.9
Rhsim13G0207900 Rhododendron simsii HOM05D006044 ORTHO05D007653 1.0e-58 229.9 125 92.0
unitig_27.g25012 Utricularia gibba HOM05D006044 ORTHO05D007653 1.0e-58 229.9 128 90.6
Cfa009890 Carpinus fangiana HOM05D006044 ORTHO05D007653 1.8e-58 229.2 125 92.8
Haze_23252 Corylus avellana HOM05D006044 ORTHO05D007653 1.8e-58 229.2 125 92.8
Hma1.2p1_1357F.1_g277915 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 1.8e-58 229.2 121 93.4
A03p05430 Brassica napus HOM05D006044 ORTHO05D007653 3.0e-58 228.4 125 91.2
C03p06320 Brassica napus HOM05D006044 ORTHO05D007653 3.0e-58 228.4 125 91.2
BolC3t13140H Brassica oleracea HOM05D006044 ORTHO05D007653 3.0e-58 228.4 125 91.2
BraA03t09881Z Brassica rapa HOM05D006044 ORTHO05D007653 3.0e-58 228.4 125 91.2
SalBow8G2527 Salvia bowleyana HOM05D006044 ORTHO05D007653 3.9e-58 228.0 118 94.1
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 5.2e-58 227.6 125 90.4
CiPaw.14G111700 Carya illinoinensis HOM05D006044 ORTHO05D007653 5.2e-58 227.6 125 92.0
CDE08G0916 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 5.2e-58 227.6 125 92.8
A10p25610 Brassica napus HOM05D006044 ORTHO05D007653 6.7e-58 227.3 125 89.6
BraA10t44628Z Brassica rapa HOM05D006044 ORTHO05D007653 6.7e-58 227.3 125 89.6
AagrBONN_evm.TU.Sc2ySwM_117.1592 Anthoceros agrestis HOM05D006044 ORTHO05D007653 8.8e-58 226.9 125 89.6
Sp6g31450 Schrenkiella parvula HOM05D006044 ORTHO05D007653 8.8e-58 226.9 125 90.4
Migut.N02377 Erythranthe guttata HOM05D006044 ORTHO05D007653 1.1e-57 226.5 129 87.6
Thhalv10015024m.g Eutrema salsugineum HOM05D006044 ORTHO05D007653 1.1e-57 226.5 125 89.6
ECA238G3020 Erigeron canadensis HOM05D006044 ORTHO05D007653 1.5e-57 226.1 122 91.0
BcaB01g05427 Brassica carinata HOM05D006044 ORTHO05D007653 2.0e-57 225.7 125 89.6
Nn017s41474 Nelumbo nucifera HOM05D006044 ORTHO05D007653 2.0e-57 225.7 116 97.4
SGA_v2.0_scaffold310G48206 Striga asiatica HOM05D006044 ORTHO05D007653 2.0e-57 225.7 128 88.3
SGA_v2.0_scaffold3G01443 Striga asiatica HOM05D006044 ORTHO05D007653 2.0e-57 225.7 128 88.3
Ah.05g173120 Amaranthus hybridus HOM05D006044 ORTHO05D007653 2.6e-57 225.3 123 90.2
Mapoly0207s0011 Marchantia polymorpha HOM05D006044 ORTHO05D007653 2.6e-57 225.3 124 89.5
SalBow1G1993 Salvia bowleyana HOM05D006044 ORTHO05D000010 2.6e-57 225.3 117 93.2
AL6G22970 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 4.4e-57 224.6 125 89.6
AT5G12190 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 4.4e-57 224.6 125 89.6
Aqoxy2G00401 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 5.7e-57 224.2 125 91.2
EL10Ac1g00766 Beta vulgaris HOM05D006044 ORTHO05D007653 5.7e-57 224.2 123 90.2
EL10Ac5g12840 Beta vulgaris HOM05D006044 ORTHO05D007653 5.7e-57 224.2 123 90.2
AUR62013740 Chenopodium quinoa HOM05D006044 ORTHO05D007653 5.7e-57 224.2 123 90.2
AUR62023411 Chenopodium quinoa HOM05D006044 ORTHO05D007653 5.7e-57 224.2 123 90.2
Carub.0006s1069 Capsella rubella HOM05D006044 ORTHO05D007653 2.2e-56 222.2 125 88.8
unitig_699.g19149 Utricularia gibba HOM05D006044 ORTHO05D007653 2.2e-56 222.2 128 89.1
HPP92_019149 Vanilla planifolia HOM05D006044 ORTHO05D007653 2.2e-56 222.2 119 91.6
Dinv09443 Davidia involucrata HOM05D006044 ORTHO05D007653 2.8e-56 221.9 116 94.8
Pp3c1_15740 Physcomitrium patens HOM05D006044 ORTHO05D007653 6.3e-56 220.7 119 89.9
Dinv37467 Davidia involucrata HOM05D006044 ORTHO05D007653 8.2e-56 220.3 116 94.0
Ca_07394_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 1.6e-54 216.1 125 88.0
CBR_g501 Chara braunii HOM05D006044 ORTHO05D007653 5.0e-53 211.1 118 86.4
Zm00001eb062150 Zea mays HOM05D006044 ORTHO05D007653 5.0e-53 211.1 122 84.4
Os03g0811700 Oryza sativa ssp. japonica HOM05D006044 ORTHO05D007653 6.5e-53 210.7 122 84.4
Zm00001eb212190 Zea mays HOM05D006044 ORTHO05D007653 6.5e-53 210.7 122 84.4
BcaNung07015 Brassica carinata HOM05D006044 ORTHO05D007653 1.1e-52 209.9 115 89.6
CARHR200930 Cardamine hirsuta HOM05D006044 ORTHO05D007653 1.2e-51 206.5 125 81.6
CSS0031497 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 5.7e-49 197.6 139 74.1
Aqoxy2G00402 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 1.7e-48 196.1 125 75.2
SMO143G0133 Selaginella moellendorffii HOM05D006044 ORTHO05D007653 4.1e-47 191.4 115 81.7
AL3G46680 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 3.5e-46 188.3 116 77.6
MD13G1049300 Malus domestica HOM05D006044 ORTHO05D007653 4.5e-46 188.0 106 88.7
Cre03.g158950 Chlamydomonas reinhardtii HOM05D006044 ORTHO05D007653 2.1e-43 179.1 119 73.1
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 2.2e-40 169.1 85 95.3
MCO15G700 Micromonas commoda HOM05D006044 ORTHO05D007653 1.2e-38 163.3 93 82.8
EL10Ac9g21533 Beta vulgaris HOM05D006044 ORTHO05D007653 4.2e-36 154.8 91 85.7
PRCOL_00006242 Prasinoderma coloniale HOM05D006044 ORTHO05D007653 9.2e-31 137.1 113 59.3
Haze_26695 Corylus avellana HOM05D006044 ORTHO05D007653 1.1e-28 130.2 113 50.4
AT2G14870 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 5.4e-23 111.3 70 71.4
SGA_v2.0_scaffold34G13906 Striga asiatica HOM05D006044 ORTHO05D007653 2.3e-21 105.9 96 58.3
SalBow1G3729 Salvia bowleyana HOM05D006044 ORTHO05D357234 1.9e-15 86.3 42 95.2
SGA_v2.0_scaffold5G02950 Striga asiatica HOM05D006044 ORTHO05D007653 3.2e-15 85.5 77 59.7
SGA_v2.0_scaffold198G41064 Striga asiatica HOM05D006044 ORTHO05D400222 8.3e-08 60.8 102 39.2
Pp3c14_2340 Physcomitrium patens HOM05D006044 ORTHO05D318821 1.1e-07 60.5 31 87.1
PGR102G3118 Punica granatum HOM05D002411 ORTHO05D002564 5.4e-07 58.2 84 39.3
Dinv40333 Davidia involucrata HOM05D001413 ORTHO05D001385 7.1e-07 57.8 81 37.0
Gorai.003G183300 Gossypium raimondii HOM05D000142 ORTHO05D003173 2.7e-06 55.8 84 34.5
Mapoly0042s0009 Marchantia polymorpha HOM05D000142 ORTHO05D001253 3.5e-06 55.5 96 33.3
Potri.005G024600 Populus trichocarpa HOM05D001413 ORTHO05D001385 3.5e-06 55.5 64 45.3
COL.COLO4_11167 Corchorus olitorius HOM05D002411 ORTHO05D002564 4.6e-06 55.1 86 33.7
MBI14_g02603_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 4.6e-06 55.1 114 35.1
Aqoxy1G01640 Aquilegia oxysepala HOM05D005326 ORTHO05D006734 6.0e-06 54.7 95 31.6
Aqoxy2G00917 Aquilegia oxysepala HOM05D005326 ORTHO05D006734 6.0e-06 54.7 95 31.6
Dinv30820 Davidia involucrata HOM05D001413 ORTHO05D001385 6.0e-06 54.7 86 36.0
AL1G12240 Arabidopsis lyrata HOM05D001413 ORTHO05D001385 7.8e-06 54.3 74 35.1
A02p24730 Brassica napus HOM05D001413 ORTHO05D001385 7.8e-06 54.3 74 36.5
Haze_04133 Corylus avellana HOM05D001413 ORTHO05D001385 7.8e-06 54.3 78 35.9


User provided reference genes

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