Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 0.0e+00 1431.8 726 100.0
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1243.0 722 90.0
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1241.1 722 89.9
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1215.7 725 86.3
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1127.1 723 80.5
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1122.5 722 79.9
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1120.1 724 79.7
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1120.1 729 79.8
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1118.2 721 79.8
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1114.0 722 79.6
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1113.2 718 79.5
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1112.4 722 80.3
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1109.4 717 79.8
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1105.9 722 78.3
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1105.5 727 78.8
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1105.5 722 77.8
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1105.1 745 78.3
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1103.6 722 79.2
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1102.8 724 79.0
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1102.4 722 78.8
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1101.7 674 80.7
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1101.7 722 78.1
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1100.1 723 79.1
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1099.7 737 76.8
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1099.3 722 78.7
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1099.0 719 78.7
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1099.0 723 79.4
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1098.6 726 78.8
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1098.6 724 78.5
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1096.3 725 78.3
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1095.5 722 77.7
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1094.3 723 78.7
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1094.3 725 78.3
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1094.0 729 77.8
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1093.6 721 78.5
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1092.0 723 78.1
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1092.0 722 77.4
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1091.6 727 79.0
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1091.3 726 79.1
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1090.1 727 77.9
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1089.7 728 78.8
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1088.2 727 77.6
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1087.8 678 79.6
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1087.8 718 78.7
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1087.8 722 78.0
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1085.9 727 77.6
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1083.6 722 77.0
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1083.6 719 78.3
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1083.6 678 78.8
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1083.2 726 77.7
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1082.8 730 77.4
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1081.6 722 76.9
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1081.6 719 77.7
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1081.2 722 78.0
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1081.2 734 77.9
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1079.7 718 77.0
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1077.4 722 77.4
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1077.0 678 78.6
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.5e-311 1072.4 720 76.9
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 2.0e-311 1072.0 722 75.2
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 3.5e-311 1071.2 725 76.8
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 6.0e-311 1070.5 720 77.8
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 7.4e-311 1070.1 725 77.0
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 1.7e-310 1068.9 722 76.6
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 2.2e-310 1068.5 716 77.1
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 1.4e-309 1065.8 695 79.4
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 7.1e-309 1063.5 724 76.1
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 9.3e-309 1063.1 722 74.7
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 1.5e-306 1055.8 732 75.1
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 1.9e-306 1055.4 721 74.9
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 2.1e-305 1052.0 721 76.3
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 1.8e-304 1048.9 726 74.5
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 2.4e-304 1048.5 718 75.9
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 4.0e-304 1047.7 720 76.2
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 6.9e-304 1047.0 722 75.6
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 5.8e-303 1043.9 687 76.0
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 1.1e-301 1039.6 678 75.2
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 1.2e-300 1036.2 728 75.1
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 2.1e-300 1035.4 739 72.8
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 2.1e-300 1035.4 729 74.3
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 2.7e-300 1035.0 722 75.3
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 4.6e-300 1034.2 735 74.3
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 4.6e-300 1034.2 851 66.0
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 1.3e-299 1032.7 720 74.9
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 3.0e-299 1031.6 737 74.1
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 3.0e-299 1031.6 737 74.1
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 1.5e-298 1029.2 726 73.1
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 2.8e-297 1025.0 752 71.0
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 4.8e-297 1024.2 720 74.4
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 5.3e-296 1020.8 722 72.7
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 3.4e-295 1018.1 723 73.0
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 2.2e-294 1015.4 722 73.4
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 3.8e-294 1014.6 686 72.2
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 1.2e-292 1009.6 720 73.1
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 2.7e-292 1008.4 731 73.1
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 1.0e-291 1006.5 630 77.8
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 1.3e-291 1006.1 728 68.1
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.0e-291 1005.0 666 75.2
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 8.7e-291 1003.4 733 72.2
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.5e-290 1001.9 718 72.7
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 4.8e-289 997.7 683 72.8
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 8.4e-286 986.9 688 72.4
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 8.7e-283 976.9 732 71.0
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 1.1e-282 976.5 711 71.3
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 1.9e-282 975.7 722 69.1
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 5.7e-282 974.2 715 70.8
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 9.6e-282 973.4 636 75.5
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 2.8e-281 971.8 722 69.4
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 1.4e-280 969.5 722 66.2
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 2.0e-279 965.7 717 67.5
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 4.8e-273 944.5 723 67.1
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 5.9e-271 937.6 594 77.6
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 2.2e-270 935.6 727 69.3
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 8.8e-267 923.7 682 69.4
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 2.8e-265 918.7 683 66.6
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 8.2e-265 917.1 677 66.3
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 4.4e-258 894.8 644 72.4
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 5.9e-255 884.4 677 67.1
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 1.6e-244 849.7 682 61.6
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 6.8e-243 844.3 679 63.0
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 6.3e-233 811.2 701 58.8
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 8.9e-227 790.8 731 55.7
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 2.2e-225 786.2 686 57.7
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.2e-215 753.8 690 56.4
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 4.0e-203 712.2 497 77.1
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 5.4e-200 701.8 396 85.9
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.6e-172 610.5 464 71.6
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 1.8e-139 500.7 469 56.1
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 7.2e-128 462.2 265 82.6
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.5e-122 443.4 265 80.8
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 1.2e-117 428.3 782 36.8
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 1.7e-113 414.5 733 36.2
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 2.0e-109 401.0 234 82.5
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 2.9e-108 397.1 228 83.3
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.2e-106 391.7 308 66.2
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 1.4e-102 378.3 279 69.9
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.6e-90 338.2 211 76.8
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 2.1e-82 311.2 375 44.5
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 2.1e-66 258.1 668 31.0
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 4.2e-59 233.8 366 41.8
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 4.2e-59 233.8 907 22.9
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 9.7e-48 196.1 204 53.4
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 1.3e-47 195.7 145 64.1
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 8.5e-44 183.0 118 72.9
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 3.3e-40 171.0 123 64.2
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 4.3e-40 170.6 141 53.9
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 9.7e-40 169.5 109 78.0
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 2.5e-35 154.8 132 55.3
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 2.5e-35 154.8 132 55.3
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 2.5e-35 154.8 132 55.3
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 2.5e-35 154.8 132 55.3
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 2.5e-35 154.8 132 55.3
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.0e-33 149.4 76 88.2
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.0e-33 147.9 76 86.8
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.9e-33 147.5 75 89.3
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.7e-33 146.7 76 86.8
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 1.1e-32 146.0 88 79.5
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.2e-31 141.7 78 82.1
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.8e-31 141.4 74 86.5
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 5.5e-27 127.1 162 48.1
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 8.8e-25 119.8 65 86.2
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.8e-22 112.1 130 49.2
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 5.9e-13 80.5 97 44.3
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 8.0e-10 70.1 46 63.0
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 6.8e-09 67.0 179 31.8
ClCG03G010470 Citrullus lanatus HOM05D000003 ORTHO05D000004 3.4e-08 64.7 52 46.2
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 9.8e-08 63.2 42 66.7


User provided reference genes

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