Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G016640 Citrullus lanatus HOM05D006139 ORTHO05D007681 0.0e+00 1202.2 616 100.0
MELO3C017678.2 Cucumis melo HOM05D006139 ORTHO05D007681 9.4e-246 853.6 656 73.5
CsaV3_4G003770 Cucumis sativus L. HOM05D006139 ORTHO05D007681 8.0e-245 850.5 646 73.7
Sed0017452 Sechium edule HOM05D006139 ORTHO05D007681 6.8e-236 820.8 646 70.1
Hma1.2p1_0412F.1_g147150 Hydrangea macrophylla HOM05D006139 ORTHO05D007681 1.4e-201 706.8 654 61.0
GSVIVG01031668001 Vitis vinifera HOM05D006139 ORTHO05D007681 6.0e-200 701.4 650 61.1
CSS0045945 Camellia sinensis var. sinensis HOM05D006139 ORTHO05D007681 8.7e-199 697.6 654 59.9
Potri.011G107400 Populus trichocarpa HOM05D006139 ORTHO05D007681 8.7e-199 697.6 653 59.9
Sabra11G0095200 Salix brachista HOM05D006139 ORTHO05D007681 1.2e-195 687.2 666 59.0
Ciclev10019318m.g Citrus clementina HOM05D006139 ORTHO05D007681 6.4e-194 681.4 651 59.1
Prupe.1G178000 Prunus persica HOM05D006139 ORTHO05D007681 8.4e-194 681.0 655 58.3
Lj4A728T41 Lonicera japonica HOM05D006139 ORTHO05D007681 7.1e-193 677.9 601 62.4
QL10p044141 Quercus lobata HOM05D006139 ORTHO05D007681 9.3e-193 677.6 687 56.9
Sopen09g036170 Solanum pennellii HOM05D006139 ORTHO05D007681 1.2e-192 677.2 653 58.0
vmacro13984 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 1.7e-191 673.3 712 55.8
Solyc09g098230.3 Solanum lycopersicum HOM05D006139 ORTHO05D007681 3.9e-191 672.2 653 57.6
Haze_11079 Corylus avellana HOM05D006139 ORTHO05D007681 5.1e-191 671.8 617 62.1
CANSAT11G1108 Cannabis sativa HOM05D006139 ORTHO05D007681 1.5e-190 670.2 653 58.5
Rhsim07G0086500 Rhododendron simsii HOM05D006139 ORTHO05D007681 1.9e-190 669.8 736 54.1
Aqoxy2G03950 Aquilegia oxysepala HOM05D006139 ORTHO05D007681 2.5e-190 669.5 656 57.9
Manes.03G099000 Manihot esculenta HOM05D006139 ORTHO05D007681 4.3e-190 668.7 654 57.3
Eucgr.F03241 Eucalyptus grandis HOM05D006139 ORTHO05D007681 5.6e-190 668.3 653 57.6
TWI38G2388 Tripterygium wilfordii HOM05D006139 ORTHO05D007681 1.6e-189 666.8 652 58.0
Duzib213G0841 Durio zibethinus HOM05D006139 ORTHO05D007681 1.2e-187 660.6 654 57.8
MD13G1278700 Malus domestica HOM05D006139 ORTHO05D007681 3.4e-187 659.1 655 57.1
TAR365G1167 Trochodendron aralioides HOM05D006139 ORTHO05D007681 5.8e-187 658.3 628 59.1
Thecc.07G123700 Theobroma cacao HOM05D006139 ORTHO05D007681 9.9e-187 657.5 656 56.9
Migut.N00440 Erythranthe guttata HOM05D006139 ORTHO05D007681 1.7e-186 656.8 656 57.3
RcHm_v2.0_Chr4g0409801 Rosa chinensis HOM05D006139 ORTHO05D007681 3.8e-186 655.6 653 56.2
Cc03_g10570 Coffea canephora HOM05D006139 ORTHO05D007681 4.9e-186 655.2 653 56.7
CiPaw.01G108300 Carya illinoinensis HOM05D006139 ORTHO05D007681 4.2e-185 652.1 654 57.3
Sc22g0003230 Simmondsia chinensis HOM05D006139 ORTHO05D007681 3.5e-184 649.0 651 56.5
ECA246G3778 Erigeron canadensis HOM05D006139 ORTHO05D007681 3.9e-183 645.6 655 56.5
Lalb_Chr06g0164661 Lupinus albus HOM05D006139 ORTHO05D007681 5.1e-183 645.2 655 55.6
Gohir.A01G052100 Gossypium hirsutum HOM05D006139 ORTHO05D007681 8.7e-183 644.4 655 56.8
arahy.Tifrunner.gnm1.ann1.46LBLY Arachis hypogaea HOM05D006139 ORTHO05D007681 1.1e-182 644.0 651 56.5
Gorai.002G052100 Gossypium raimondii HOM05D006139 ORTHO05D007681 1.5e-182 643.7 655 56.8
PSO675G6876 Papaver somniferum HOM05D006139 ORTHO05D007681 5.6e-182 641.7 660 55.8
PSO017G2886 Papaver somniferum HOM05D006139 ORTHO05D007681 2.8e-181 639.4 659 55.7
Glyma.20G248800 Glycine max HOM05D006139 ORTHO05D007681 6.2e-181 638.3 660 55.8
SGA_v2.0_scaffold109G31142 Striga asiatica HOM05D006139 ORTHO05D007681 6.2e-181 638.3 657 55.6
Nn3g20967 Nelumbo nucifera HOM05D006139 ORTHO05D007681 5.3e-180 635.2 605 58.7
VMungo0720G1636 Vigna mungo HOM05D006139 ORTHO05D007681 5.3e-180 635.2 655 56.3
Lsat_1_v5_gn_3_24941 Lactuca sativa HOM05D006139 ORTHO05D007681 2.0e-179 633.3 652 55.1
FvH4_4g12150 Fragaria vesca HOM05D006139 ORTHO05D007681 2.9e-178 629.4 652 54.3
FAN12G2778 Fragaria x ananassa HOM05D006139 ORTHO05D007681 2.9e-178 629.4 652 54.3
MSTRG.17865 Avicennia marina HOM05D006139 ORTHO05D007681 1.4e-177 627.1 654 54.9
Lj5g0023092 Lotus japonicus HOM05D006139 ORTHO05D007681 1.9e-177 626.7 652 55.4
Peaxi162Scf00286g00443 Petunia axillaris HOM05D006139 ORTHO05D007681 1.9e-177 626.7 613 57.1
PGR031G2404 Punica granatum HOM05D006139 ORTHO05D007681 2.5e-177 626.3 655 54.8
Psat6g243280 Pisum sativum HOM05D006139 ORTHO05D007681 3.2e-177 625.9 653 54.4
Zm00001eb116810 Zea mays HOM05D006139 ORTHO05D007681 4.2e-177 625.5 654 52.1
Medtr1g116980 Medicago truncatula HOM05D006139 ORTHO05D007681 1.3e-173 614.0 651 53.8
Phvul.007G001600 Phaseolus vulgaris HOM05D006139 ORTHO05D007681 9.0e-172 607.8 653 54.1
Hund19684 Selenicereus undatus HOM05D006139 ORTHO05D007681 2.2e-170 603.2 624 55.6
Sp1g15110 Schrenkiella parvula HOM05D006139 ORTHO05D007681 7.2e-169 598.2 652 52.9
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 2.7e-168 596.3 652 52.6
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 3.6e-168 595.9 652 52.5
Thhalv10007085m.g Eutrema salsugineum HOM05D006139 ORTHO05D007681 3.6e-168 595.9 652 52.6
AT1G16970 Arabidopsis thaliana HOM05D006139 ORTHO05D007681 1.0e-167 594.3 653 53.1
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 1.3e-167 594.0 620 55.8
Nitab4.5_0001687g0050 Nicotiana tabacum HOM05D006139 ORTHO05D007681 1.1e-166 590.9 601 54.6
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 1.9e-166 590.1 652 52.1
Nitab4.5_0001526g0130 Nicotiana tabacum HOM05D006139 ORTHO05D007681 2.5e-166 589.7 653 52.1
Gohir.D01G041500 Gossypium hirsutum HOM05D006139 ORTHO05D007681 1.3e-165 587.4 616 55.4
A06p12870 Brassica napus HOM05D006139 ORTHO05D007681 1.6e-165 587.0 652 52.1
Carub.0001s1670 Capsella rubella HOM05D006139 ORTHO05D007681 3.7e-165 585.9 651 52.1
CARHR017480 Cardamine hirsuta HOM05D006139 ORTHO05D007681 5.3e-164 582.0 653 52.7
FAN12G0395 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.4e-161 573.9 628 52.9
arahy.Tifrunner.gnm1.ann1.JAL8JD Arachis hypogaea HOM05D006139 ORTHO05D007681 2.5e-161 573.2 662 52.0
FAN07G2792 Fragaria x ananassa HOM05D006139 ORTHO05D007681 4.2e-161 572.4 634 52.1
AUR62018029 Chenopodium quinoa HOM05D006139 ORTHO05D007681 9.4e-161 571.2 648 52.9
MBI07_g00628_MAGBIO Magnolia biondii HOM05D006139 ORTHO05D007681 9.4e-161 571.2 614 54.9
FAN17G0552 Fragaria x ananassa HOM05D006139 ORTHO05D007681 6.1e-160 568.5 624 52.6
THA.LOC104812308 Tarenaya hassleriana HOM05D006139 ORTHO05D007681 1.0e-159 567.8 651 50.8
ATR0609G005 Amborella trichopoda HOM05D006139 ORTHO05D007681 8.8e-159 564.7 653 50.2
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 3.1e-156 556.2 655 50.2
BraA06t24447Z Brassica rapa HOM05D006139 ORTHO05D007681 4.5e-155 552.4 649 50.4
CAN.G710.40 Capsicum annuum HOM05D006139 ORTHO05D007681 5.0e-154 548.9 637 52.4
AUR62003718 Chenopodium quinoa HOM05D006139 ORTHO05D007681 7.2e-153 545.0 570 55.3
Dinv44237 Davidia involucrata HOM05D006139 ORTHO05D007681 4.0e-143 512.7 495 57.8
Mapoly0113s0020 Marchantia polymorpha HOM05D006139 ORTHO05D007681 1.9e-121 440.7 610 43.3
Oeu013397.2 Olea europaea HOM05D006139 ORTHO05D007681 5.9e-115 419.1 417 57.3
SMO361G0513 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 2.1e-112 410.6 599 41.9
SMO361G0769 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 3.1e-111 406.8 598 41.5
HPP92_015930 Vanilla planifolia HOM05D006139 ORTHO05D007681 6.6e-106 389.0 461 49.9
CDE02G2779 Ceratophyllum demersum HOM05D006139 ORTHO05D007681 2.8e-104 383.6 457 49.7
AagrBONN_evm.TU.Sc2ySwM_228.1556 Anthoceros agrestis HOM05D006139 ORTHO05D007681 8.9e-103 378.6 617 39.7
Atru.chr2.2053 Acer truncatum HOM05D006139 ORTHO05D007681 5.8e-102 375.9 309 65.0
Cpa.g.sc77.50 Carica papaya HOM05D006139 ORTHO05D007681 4.7e-96 356.3 565 43.2
PGSC0003DMG400014069 Solanum tuberosum HOM05D006139 ORTHO05D007681 4.7e-96 356.3 305 62.3
CBR_g19434 Chara braunii HOM05D006139 ORTHO05D007681 1.4e-92 344.7 611 36.7
TPR.G8879 Trifolium pratense HOM05D006139 ORTHO05D007681 1.9e-92 344.4 311 60.1
Atru.chr2.2052 Acer truncatum HOM05D006139 ORTHO05D007681 5.1e-90 336.3 263 68.4
Pp3c18_7140 Physcomitrium patens HOM05D006139 ORTHO05D007681 2.4e-87 327.4 606 36.5
DCAR_005495 Daucus carota HOM05D006139 ORTHO05D007681 1.9e-84 317.8 237 69.6
SHI27652 Sapria himalayana HOM05D006139 ORTHO05D007681 1.7e-77 294.7 368 49.2
TPR.G8868 Trifolium pratense HOM05D006139 ORTHO05D007681 1.2e-75 288.5 200 70.5
Ca_11423_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 5.1e-74 283.1 246 61.0
unitig_578.g15953 Utricularia gibba HOM05D006139 ORTHO05D007681 8.7e-74 282.3 222 63.5
Aa31LG7G1410 Aethionema arabicum HOM05D006139 ORTHO05D007681 9.0e-71 272.3 601 35.4
TPR.G8907 Trifolium pratense HOM05D006139 ORTHO05D007681 9.3e-68 262.3 225 61.3
DCAR_005496 Daucus carota HOM05D006139 ORTHO05D007681 4.0e-63 246.9 231 59.7
Os07g0184900 Oryza sativa ssp. japonica HOM05D006139 ORTHO05D007681 3.3e-57 227.3 156 70.5
SEGI_35314 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 4.6e-51 206.8 161 64.0
Ca_11425_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 3.7e-48 197.2 132 74.2
Ah.03g143030 Amaranthus hybridus HOM05D006139 ORTHO05D007681 4.5e-46 190.3 131 74.0
FAN22G0061 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.3e-40 172.2 132 67.4
Hund20183 Selenicereus undatus HOM05D006139 ORTHO05D007681 4.8e-40 170.2 161 59.6
unitig_578.g15954 Utricularia gibba HOM05D006139 ORTHO05D004041 2.1e-35 154.8 129 62.8
Cre13.g607500 Chlamydomonas reinhardtii HOM05D006139 ORTHO05D007681 5.2e-34 150.2 721 25.2
Cfa021664 Carpinus fangiana HOM05D006139 ORTHO05D007681 3.3e-33 147.5 638 27.9
arahy.Tifrunner.gnm1.ann1.6RHH59 Arachis hypogaea HOM05D006139 ORTHO05D007681 3.5e-30 137.5 100 68.0
CANSAT78G0600 Cannabis sativa HOM05D006139 ORTHO05D007681 8.8e-26 122.9 99 63.6
AUR62043732 Chenopodium quinoa HOM05D006139 ORTHO05D007681 3.5e-22 110.9 84 64.3
SEGI_31905 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 3.6e-19 100.9 68 67.6
Ca_11424_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 1.0e-18 99.4 97 54.6
Potri.006G132501 Populus trichocarpa HOM05D006139 ORTHO05D007681 2.7e-14 84.7 77 58.4
CARHR154100 Cardamine hirsuta HOM05D006139 ORTHO05D007681 4.5e-14 84.0 66 65.2
HanXRQChr13g0406711 Helianthus annuus HOM05D006139 ORTHO05D007681 1.7e-13 82.0 50 76.0
vmacro12608 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 3.8e-13 80.9 64 67.2
BolC4t22161H Brassica oleracea HOM05D006139 ORTHO05D007681 6.5e-13 80.1 66 59.1
Dinv25612 Davidia involucrata HOM05D000447 ORTHO05D007681 8.9e-10 69.7 76 52.6
SEGI_11325 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 2.4e-07 61.6 40 65.0
Ah.03g143010 Amaranthus hybridus HOM05D006139 ORTHO05D007681 4.1e-07 60.8 99 36.4
Zm00001eb114470 Zea mays HOM05D006139 ORTHO05D007681 4.1e-07 60.8 36 75.0


User provided reference genes

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