Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G001630 Citrullus lanatus HOM05D006570 ORTHO05D008193 6.9e-265 916.8 468 100.0
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 5.2e-228 794.3 452 90.0
MELO3C022371.2 Cucumis melo HOM05D006570 ORTHO05D008193 7.8e-200 700.7 452 83.0
Haze_04512 Corylus avellana HOM05D006570 ORTHO05D008193 5.1e-159 565.1 415 69.9
Cfa006298 Carpinus fangiana HOM05D006570 ORTHO05D008193 1.5e-158 563.5 419 69.2
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 2.4e-156 556.2 440 66.1
Atru.chr6.3468 Acer truncatum HOM05D006570 ORTHO05D008193 2.5e-153 546.2 434 65.4
Potri.014G198000 Populus trichocarpa HOM05D006570 ORTHO05D008193 1.5e-150 537.0 471 60.7
Dinv28772 Davidia involucrata HOM05D006570 ORTHO05D008193 4.8e-149 531.9 437 64.1
RcHm_v2.0_Chr5g0052821 Rosa chinensis HOM05D006570 ORTHO05D008193 6.2e-149 531.6 426 65.0
CANSAT01G0840 Cannabis sativa HOM05D006570 ORTHO05D008193 1.8e-148 530.0 419 64.4
Actinidia11648 Actinidia chinensis HOM05D006570 ORTHO05D008193 9.0e-148 527.7 413 64.2
Duzib133G0843 Durio zibethinus HOM05D006570 ORTHO05D008193 2.0e-147 526.6 460 63.0
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 2.2e-146 523.1 439 63.3
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 2.2e-146 523.1 439 63.3
Prupe.6G214800 Prunus persica HOM05D006570 ORTHO05D008193 2.2e-146 523.1 413 65.9
Ca_23570_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 2.9e-146 522.7 441 61.5
Ca_23579_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 2.9e-146 522.7 441 61.5
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 4.9e-146 521.9 440 61.8
Lj3g0023743 Lotus japonicus HOM05D006570 ORTHO05D008193 2.5e-145 519.6 442 60.9
FvH4_3g28500 Fragaria vesca HOM05D006570 ORTHO05D008193 4.2e-145 518.8 436 62.2
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 5.5e-145 518.5 455 59.1
SalBow6G3933 Salvia bowleyana HOM05D006570 ORTHO05D008193 1.2e-144 517.3 454 59.7
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 2.1e-144 516.5 439 63.1
COL.COLO4_19720 Corchorus olitorius HOM05D006570 ORTHO05D008193 3.5e-144 515.8 399 66.9
Oeu020442.2 Olea europaea HOM05D006570 ORTHO05D008193 3.5e-144 515.8 443 60.3
SalBow2G2795 Salvia bowleyana HOM05D006570 ORTHO05D008193 1.3e-143 513.8 454 59.3
Solyc09g018850.3 Solanum lycopersicum HOM05D006570 ORTHO05D008193 3.9e-143 512.3 440 60.7
TWI18G1431 Tripterygium wilfordii HOM05D006570 ORTHO05D008193 3.9e-143 512.3 460 59.1
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 5.1e-143 511.9 413 63.7
Sopen09g012610 Solanum pennellii HOM05D006570 ORTHO05D008193 1.1e-142 510.8 440 60.5
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 3.3e-142 509.2 438 62.6
MD15G1141300 Malus domestica HOM05D006570 ORTHO05D008193 3.3e-142 509.2 407 66.3
FAN21G3910 Fragaria x ananassa HOM05D006570 ORTHO05D008193 4.3e-142 508.8 441 61.5
PGSC0003DMG400020287 Solanum tuberosum HOM05D006570 ORTHO05D008193 7.4e-142 508.1 442 59.7
Lj2A1109T67 Lonicera japonica HOM05D006570 ORTHO05D008193 1.3e-141 507.3 464 59.7
Migut.D00755 Erythranthe guttata HOM05D006570 ORTHO05D008193 1.6e-141 506.9 437 61.8
TPR.G5123 Trifolium pratense HOM05D006570 ORTHO05D008193 2.2e-141 506.5 417 61.9
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 4.8e-141 505.4 440 60.2
HanXRQChr16g0508391 Helianthus annuus HOM05D006570 ORTHO05D008193 4.1e-140 502.3 451 59.9
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 2.0e-139 500.0 445 59.8
Medtr8g028105 Medicago truncatula HOM05D006570 ORTHO05D008193 2.6e-139 499.6 437 59.7
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 1.0e-138 497.7 444 59.0
TAR362G0032 Trochodendron aralioides HOM05D006570 ORTHO05D008193 1.0e-138 497.7 428 61.0
Cc01_g15710 Coffea canephora HOM05D006570 ORTHO05D008193 1.3e-138 497.3 451 58.5
Peaxi162Scf12724g00014 Petunia axillaris HOM05D006570 ORTHO05D008193 1.3e-138 497.3 451 58.5
Aa31sc565G50 Aethionema arabicum HOM05D006570 ORTHO05D008193 1.7e-138 496.9 448 59.2
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 1.7e-138 496.9 436 61.2
Hma1.2p1_0834F.1_g225720 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 3.8e-138 495.7 398 64.8
Nitab4.5_0005967g0010 Nicotiana tabacum HOM05D006570 ORTHO05D008193 8.5e-138 494.6 434 59.2
THA.LOC104815379 Tarenaya hassleriana HOM05D006570 ORTHO05D008193 1.1e-137 494.2 444 58.6
Ah.11g050650 Amaranthus hybridus HOM05D006570 ORTHO05D008193 2.5e-137 493.0 424 60.6
Cpa.g.sc8.9 Carica papaya HOM05D006570 ORTHO05D008193 2.5e-137 493.0 457 59.5
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 7.2e-137 491.5 465 57.0
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 1.6e-136 490.3 446 57.8
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 2.7e-136 489.6 464 56.9
Sabra14G0132400 Salix brachista HOM05D006570 ORTHO05D008193 4.6e-136 488.8 551 51.0
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 6.1e-136 488.4 457 59.1
GSVIVG01004124001 Vitis vinifera HOM05D006570 ORTHO05D008193 6.1e-136 488.4 431 61.7
Carub.0007s3008 Capsella rubella HOM05D006570 ORTHO05D008193 5.1e-135 485.3 442 57.9
Nitab4.5_0009028g0030 Nicotiana tabacum HOM05D006570 ORTHO05D008193 6.7e-135 485.0 476 55.3
AL9U11910 Arabidopsis lyrata HOM05D006570 ORTHO05D008193 5.7e-134 481.9 437 58.6
Sp7g09050 Schrenkiella parvula HOM05D006570 ORTHO05D008193 1.4e-132 477.2 445 58.4
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 1.8e-132 476.9 418 59.1
Sc05g0001500 Simmondsia chinensis HOM05D006570 ORTHO05D008193 4.1e-132 475.7 487 54.4
BcaB03g16147 Brassica carinata HOM05D006570 ORTHO05D008193 9.1e-132 474.6 439 57.6
C04p43140 Brassica napus HOM05D006570 ORTHO05D008193 2.0e-131 473.4 425 58.6
BcaC02g09469 Brassica carinata HOM05D006570 ORTHO05D008193 3.4e-131 472.6 425 58.6
A04p09180 Brassica napus HOM05D006570 ORTHO05D008193 3.4e-131 472.6 442 57.5
AT4G12740 Arabidopsis thaliana HOM05D006570 ORTHO05D008193 1.7e-130 470.3 424 59.0
CARHR218120 Cardamine hirsuta HOM05D006570 ORTHO05D008193 3.8e-130 469.2 438 58.0
Aqoxy1G01428 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 5.0e-130 468.8 461 56.0
MBI10_g46813_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 5.0e-130 468.8 449 57.5
Thhalv10024575m.g Eutrema salsugineum HOM05D006570 ORTHO05D008193 8.5e-130 468.0 415 60.0
EL10Ac5g10565 Beta vulgaris HOM05D006570 ORTHO05D008193 3.2e-129 466.1 414 59.9
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 3.2e-129 466.1 396 61.9
Aqoxy7G03970 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 5.5e-129 465.3 477 55.1
Psat4g158840 Pisum sativum HOM05D006570 ORTHO05D008193 8.8e-127 458.0 393 61.3
Hund09495 Selenicereus undatus HOM05D006570 ORTHO05D008193 7.4e-126 454.9 376 61.2
CAN.G3.13 Capsicum annuum HOM05D006570 ORTHO05D008193 1.3e-125 454.1 380 61.3
BolC4t25891H Brassica oleracea HOM05D006570 ORTHO05D008193 2.8e-125 453.0 414 58.2
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 9.1e-124 448.0 416 58.9
ATR0743G076 Amborella trichopoda HOM05D006570 ORTHO05D008193 1.2e-123 447.6 400 58.2
BraA04t16613Z Brassica rapa HOM05D006570 ORTHO05D008193 1.5e-123 447.2 438 55.7
HPP92_007590 Vanilla planifolia HOM05D006570 ORTHO05D008193 2.2e-122 443.4 441 55.3
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 5.0e-122 442.2 391 60.1
AUR62028620 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.9e-121 440.3 450 52.9
AUR62032342 Chenopodium quinoa HOM05D006570 ORTHO05D008193 4.2e-121 439.1 450 53.3
AUR62008045 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.2e-120 437.6 450 53.1
CDE09G0147 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 8.8e-119 431.4 436 54.4
SHI10196 Sapria himalayana HOM05D006570 ORTHO05D008193 3.3e-118 429.5 430 53.5
Zm00001eb411200 Zea mays HOM05D006570 ORTHO05D008193 1.2e-115 421.0 460 51.5
Os12g0211400 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 5.9e-115 418.7 404 54.5
Hma1.2p1_0834F.1_g225710 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 4.2e-113 412.5 363 61.7
Os12g0212100 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 5.9e-107 392.1 407 53.3
unitig_90.g27554 Utricularia gibba HOM05D006570 ORTHO05D008193 1.5e-105 387.5 404 53.0
FAN25G2405 Fragaria x ananassa HOM05D006570 ORTHO05D008193 2.1e-104 383.6 556 43.2
SEGI_12299 Sequoiadendron giganteum HOM05D006570 ORTHO05D008193 2.1e-104 383.6 466 48.1
Eucgr.H00676 Eucalyptus grandis HOM05D006570 ORTHO05D008193 2.8e-96 356.7 315 61.6
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 8.0e-96 355.1 452 46.5
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 5.2e-95 352.4 462 46.3
Hma1.2p1_1756F.1_g301050 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 9.8e-94 348.2 319 59.9
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 9.2e-92 341.7 371 49.6
MBI10_g40441_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 8.0e-88 328.6 306 57.8
SMO202G0040 Selaginella moellendorffii HOM05D006570 ORTHO05D008193 3.4e-78 296.6 289 55.4
QL01p050877 Quercus lobata HOM05D006570 ORTHO05D008193 9.2e-76 288.5 250 60.0
FAN11G0847 Fragaria x ananassa HOM05D006570 ORTHO05D008193 1.2e-75 288.1 232 61.2
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 3.1e-71 273.5 400 43.8
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 8.6e-66 255.4 484 38.2
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 4.3e-57 226.5 276 44.9
GSVIVG01038286001 Vitis vinifera HOM05D006570 ORTHO05D008193 7.1e-52 209.1 188 56.9
CSS0008113 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 3.5e-51 206.8 118 83.9
CSS0032158 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 3.5e-51 206.8 118 83.9
Ca_29093_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 2.1e-40 171.0 277 39.4
DCAR_012713 Daucus carota HOM05D006570 ORTHO05D008193 9.0e-39 165.6 126 64.3
QL01p050896 Quercus lobata HOM05D006570 ORTHO05D008193 7.6e-38 162.5 112 71.4
CDE02G1275 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 3.8e-29 133.7 131 54.2
QL05p014599 Quercus lobata HOM05D006570 ORTHO05D008193 1.9e-28 131.3 135 55.6
QL05p014267 Quercus lobata HOM05D006570 ORTHO05D008193 2.3e-26 124.4 192 42.2
CBR_g38520 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-21 107.8 85 60.0
Glyma.16G028601 Glycine max HOM05D006570 ORTHO05D008193 3.0e-18 97.4 101 46.5
PGR142G0081 Punica granatum HOM05D006570 ORTHO05D008193 3.0e-18 97.4 120 50.8
CBR_g38518 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-10 71.6 50 60.0
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 1.7e-08 65.1 186 26.9
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 8.2e-08 62.8 201 27.9
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 8.2e-08 62.8 201 27.9
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 1.8e-07 61.6 259 25.1
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 2.4e-07 61.2 201 27.4
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 3.1e-07 60.8 192 27.1
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 3.1e-07 60.8 190 27.4
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 3.1e-07 60.8 190 27.4
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 4.1e-07 60.5 184 27.2
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 5.3e-07 60.1 192 27.1
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 5.3e-07 60.1 192 27.1
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 7.0e-07 59.7 192 27.1
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 7.0e-07 59.7 224 27.7
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 7.0e-07 59.7 216 26.4
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 7.0e-07 59.7 283 25.4
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 9.1e-07 59.3 192 27.1
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.2e-06 58.9 192 26.6
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 1.2e-06 58.9 208 26.9
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 1.6e-06 58.5 192 27.1
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 1.6e-06 58.5 192 27.1
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 1.6e-06 58.5 192 27.1
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 1.6e-06 58.5 191 27.2
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 1.6e-06 58.5 202 28.7
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 2.0e-06 58.2 194 24.7
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 2.0e-06 58.2 188 25.5
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 2.0e-06 58.2 242 26.9
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 2.0e-06 58.2 155 27.1
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 2.6e-06 57.8 192 27.1
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 3.5e-06 57.4 147 27.2
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 3.5e-06 57.4 192 27.1
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 4.5e-06 57.0 218 25.2
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 4.5e-06 57.0 218 25.2
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 4.5e-06 57.0 242 24.4
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 7.7e-06 56.2 278 24.8
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 7.7e-06 56.2 215 25.1
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 7.7e-06 56.2 197 24.9
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 7.7e-06 56.2 191 26.2


User provided reference genes

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