Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 1.0e-177 628.2 964 100.0
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 3.8e-140 503.4 906 93.5
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 6.2e-135 486.1 900 92.7
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 1.2e-133 481.9 904 92.6
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 1.6e-103 381.7 293 65.2
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 2.6e-101 374.4 302 64.2
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 3.4e-101 374.0 299 66.2
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 1.1e-96 359.0 295 62.4
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 2.5e-96 357.8 291 63.6
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 3.3e-96 357.5 308 62.0
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 5.7e-96 356.7 295 62.0
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 8.2e-95 352.8 282 64.9
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 3.1e-94 350.9 299 61.2
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 5.3e-94 350.1 294 60.5
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 6.9e-94 349.7 302 60.9
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 9.1e-94 349.4 297 62.3
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 2.6e-93 347.8 303 61.1
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 6.5e-92 343.2 279 64.5
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.1e-91 342.4 290 64.5
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 1.1e-91 342.4 296 62.2
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 1.9e-91 341.7 283 64.7
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 2.5e-91 341.3 277 63.9
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 7.2e-91 339.7 303 59.7
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 1.2e-90 339.0 298 60.7
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 7.9e-90 336.3 262 66.8
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 3.9e-89 334.0 292 60.6
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 6.7e-89 333.2 263 62.4
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 6.7e-89 333.2 302 58.9
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 1.1e-88 332.4 295 58.6
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 1.1e-88 332.4 294 62.2
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 1.5e-88 332.0 231 71.9
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 2.0e-88 331.6 295 60.7
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 2.6e-88 331.3 279 64.2
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 2.6e-88 331.3 270 63.0
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 4.4e-88 330.5 244 66.8
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 4.4e-88 330.5 244 66.8
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 5.7e-88 330.1 306 57.8
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 5.7e-88 330.1 296 61.8
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 9.7e-88 329.3 298 60.4
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 1.7e-87 328.6 302 57.6
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 2.8e-87 327.8 300 56.3
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 2.8e-87 327.8 304 58.6
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 3.7e-87 327.4 270 61.1
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 8.2e-87 326.2 274 62.0
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 1.4e-86 325.5 300 60.7
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 2.4e-86 324.7 241 65.6
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 3.1e-86 324.3 296 59.8
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 4.1e-86 323.9 283 64.0
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 5.3e-86 323.6 197 76.1
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 1.5e-85 322.0 278 62.2
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 2.0e-85 321.6 301 57.8
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 2.6e-85 321.2 293 60.4
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 3.4e-85 320.9 306 57.8
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 4.5e-85 320.5 299 58.9
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 2.2e-84 318.2 311 55.0
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 5.0e-84 317.0 300 59.7
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 1.1e-83 315.8 296 55.7
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 1.9e-83 315.1 319 56.1
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 7.2e-83 313.2 295 58.0
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 3.6e-82 310.8 240 62.9
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 4.7e-82 310.5 275 58.5
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 6.1e-82 310.1 293 58.0
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 1.0e-81 309.3 310 54.2
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 2.3e-81 308.1 244 63.5
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 2.3e-81 308.1 244 63.5
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 5.2e-81 307.0 293 58.0
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 5.2e-81 307.0 267 61.8
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 5.2e-81 307.0 294 56.8
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 8.8e-81 306.2 291 54.6
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 2.0e-80 305.1 281 60.1
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 2.0e-80 305.1 302 56.3
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 2.6e-80 304.7 302 56.3
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 3.3e-80 304.3 293 56.7
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.6e-77 295.4 242 62.8
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 3.5e-77 294.3 257 60.3
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 1.2e-74 285.8 283 55.8
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 2.1e-74 285.0 274 56.6
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 3.6e-74 284.3 295 53.6
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 3.6e-74 284.3 300 55.3
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 8.0e-74 283.1 296 53.4
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 1.0e-73 282.7 273 55.7
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 3.0e-73 281.2 285 54.7
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 6.7e-73 280.0 296 53.4
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 9.7e-72 276.2 238 58.4
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 2.2e-71 275.0 272 55.1
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 2.8e-71 274.6 274 54.4
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 2.8e-71 274.6 236 61.0
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 7.0e-70 270.0 281 54.1
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.6e-69 268.9 267 56.2
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 3.5e-69 267.7 245 58.4
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 2.7e-66 258.1 235 61.3
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 1.8e-62 245.4 144 79.9
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 9.1e-62 243.0 312 48.7
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 1.6e-61 242.3 238 52.9
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 2.7e-61 241.5 189 63.5
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 1.0e-60 239.6 142 79.6
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 1.5e-59 235.7 241 50.6
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 2.1e-58 231.9 149 74.5
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.4e-57 229.2 165 66.7
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 2.3e-52 211.8 127 81.1
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 8.0e-50 203.4 206 48.5
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 1.2e-48 199.5 190 52.6
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 3.5e-45 188.0 181 47.5
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 1.0e-44 186.4 127 70.1
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 5.0e-44 184.1 183 48.1
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 3.0e-36 158.3 182 46.2
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 1.1e-35 156.4 182 46.2
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 5.6e-35 154.1 186 40.9
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 1.5e-32 146.0 202 42.1
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 9.9e-32 143.3 193 41.5
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 3.2e-30 138.3 96 67.7
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 6.0e-29 134.0 90 73.3
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 1.0e-28 133.3 96 72.9
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 3.0e-28 131.7 83 73.5
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.9e-27 129.0 98 65.3
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 9.5e-27 126.7 119 58.0
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.2e-26 126.3 117 59.0
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 1.6e-26 125.9 96 63.5
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 2.8e-26 125.2 110 59.1
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 3.6e-26 124.8 101 59.4
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 1.4e-25 122.9 101 60.4
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 1.4e-25 122.9 77 72.7
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 1.8e-25 122.5 119 55.5
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 1.2e-24 119.8 81 66.7
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 2.0e-24 119.0 104 60.6
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 7.6e-24 117.1 98 65.3
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 9.9e-24 116.7 90 58.9
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 2.9e-23 115.2 106 53.8
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 1.1e-19 103.2 192 38.5
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 1.4e-17 96.3 72 70.8
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 1.2e-13 83.2 43 88.4
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 5.1e-12 77.8 48 68.8
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 7.3e-11 73.9 71 53.5
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 7.3e-11 73.9 45 80.0
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.3e-10 73.2 73 56.2
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 9.0e-09 67.0 43 72.1
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 9.0e-09 67.0 43 72.1
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 9.0e-09 67.0 141 31.9
ATR0304G030 Amborella trichopoda HOM05D000142 ORTHO05D010028 2.0e-08 65.9 115 35.7
CsaV3_4G006300 Cucumis sativus L. HOM05D000604 ORTHO05D004856 7.6e-08 63.9 145 31.0
HPP92_006129 Vanilla planifolia HOM05D000142 ORTHO05D010028 9.9e-08 63.5 99 37.4
MELO3C016321.2 Cucumis melo HOM05D000604 ORTHO05D004856 2.9e-07 62.0 145 31.0
SMO361G0645 Selaginella moellendorffii HOM05D000142 ORTHO05D001253 4.9e-07 61.2 80 42.5
A02p24730 Brassica napus HOM05D001413 ORTHO05D001385 4.2e-06 58.2 109 33.0
Sc24g0000800 Simmondsia chinensis HOM05D001563 ORTHO05D001956 5.4e-06 57.8 77 33.8
MD05G1315100 Malus domestica HOM05D001563 ORTHO05D001956 7.1e-06 57.4 90 31.1
MD10G1296400 Malus domestica HOM05D001563 ORTHO05D001956 7.1e-06 57.4 90 31.1
Duzib235G1121 Durio zibethinus HOM05D000604 ORTHO05D004856 9.3e-06 57.0 174 31.0
Lalb_Chr17g0348741 Lupinus albus HOM05D000285 ORTHO05D000241 9.3e-06 57.0 78 33.3
Manes.13G073400 Manihot esculenta HOM05D000604 ORTHO05D004856 9.3e-06 57.0 139 30.9
Nitab4.5_0000632g0160 Nicotiana tabacum HOM05D000604 ORTHO05D004856 9.3e-06 57.0 133 32.3
Nitab4.5_0000844g0350 Nicotiana tabacum HOM05D000604 ORTHO05D004856 9.3e-06 57.0 142 32.4
PSO063G1344 Papaver somniferum HOM05D000142 ORTHO05D001253 9.3e-06 57.0 132 34.1
PSO339G2666 Papaver somniferum HOM05D000142 ORTHO05D001253 9.3e-06 57.0 132 34.1
Sabra03G0108600 Salix brachista HOM05D000604 ORTHO05D004856 9.3e-06 57.0 152 28.9


User provided reference genes

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