Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G008300 Citrullus lanatus HOM05D001410 ORTHO05D016552 1.8e-47 192.2 96 100.0
Sed0018120 Sechium edule HOM05D001410 ORTHO05D006840 4.0e-18 94.7 183 39.9
MELO3C019492.2 Cucumis melo HOM05D001410 ORTHO05D006840 2.6e-17 92.0 183 39.3
CsaV3_3G018830 Cucumis sativus L. HOM05D001410 ORTHO05D006840 9.9e-17 90.1 183 38.8
Aqoxy2G01498 Aquilegia oxysepala HOM05D001410 ORTHO05D016552 1.9e-15 85.9 84 53.6
FAN13G2235 Fragaria x ananassa HOM05D001410 ORTHO05D006840 2.1e-14 82.4 183 36.1
ClCG05G008280 Citrullus lanatus HOM05D001410 ORTHO05D006840 2.7e-14 82.0 143 41.3
FvH4_5g00340 Fragaria vesca HOM05D001410 ORTHO05D006840 2.7e-14 82.0 183 36.1
FAN04G1960 Fragaria x ananassa HOM05D001410 ORTHO05D006840 2.7e-14 82.0 183 36.1
FAN08G3530 Fragaria x ananassa HOM05D001410 ORTHO05D006840 2.7e-14 82.0 183 36.1
Prupe.5G076000 Prunus persica HOM05D001410 ORTHO05D006840 4.6e-14 81.3 183 35.5
Eucgr.A02753 Eucalyptus grandis HOM05D001410 ORTHO05D006840 7.8e-14 80.5 183 35.5
CiPaw.05G263200 Carya illinoinensis HOM05D001410 ORTHO05D006840 1.3e-13 79.7 183 35.5
RcHm_v2.0_Chr7g0202211 Rosa chinensis HOM05D001410 ORTHO05D006840 1.3e-13 79.7 183 35.5
TWI39G0800 Tripterygium wilfordii HOM05D001410 ORTHO05D006840 1.3e-13 79.7 183 36.1
vmacro09819 Vaccinium macrocarpon HOM05D001410 ORTHO05D006840 1.3e-13 79.7 183 36.1
A10p10070 Brassica napus HOM05D001410 ORTHO05D006840 1.7e-13 79.3 160 37.5
Glyma.09G133200 Glycine max HOM05D001410 ORTHO05D006840 2.3e-13 79.0 183 36.1
Phvul.004G109800 Phaseolus vulgaris HOM05D001410 ORTHO05D006840 2.3e-13 79.0 183 36.1
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 5.1e-13 77.8 183 35.0
Duzib084G0352 Durio zibethinus HOM05D001410 ORTHO05D006840 5.1e-13 77.8 183 35.5
PGR042G0190 Punica granatum HOM05D001410 ORTHO05D006840 6.6e-13 77.4 183 33.9
Cpa.g.sc107.96 Carica papaya HOM05D001410 ORTHO05D006840 8.6e-13 77.0 183 35.5
Glyma.16G179800 Glycine max HOM05D001410 ORTHO05D006840 8.6e-13 77.0 183 35.5
Hma1.2p1_0327F.1_g126310 Hydrangea macrophylla HOM05D001410 ORTHO05D006840 8.6e-13 77.0 183 35.0
TPR.G26044 Trifolium pratense HOM05D001410 ORTHO05D006840 8.6e-13 77.0 183 35.0
Gohir.A12G255700 Gossypium hirsutum HOM05D001410 ORTHO05D006840 1.1e-12 76.6 183 34.4
QL09p013112 Quercus lobata HOM05D001410 ORTHO05D006840 1.1e-12 76.6 183 34.4
CANSAT21G1393 Cannabis sativa HOM05D001410 ORTHO05D006840 1.5e-12 76.3 183 33.9
COL.COLO4_36928 Corchorus olitorius HOM05D001410 ORTHO05D006840 1.5e-12 76.3 183 35.0
Gohir.D12G257100 Gossypium hirsutum HOM05D001410 ORTHO05D006840 1.5e-12 76.3 183 34.4
Gorai.008G275300 Gossypium raimondii HOM05D001410 ORTHO05D006840 1.5e-12 76.3 183 34.4
Thecc.03G182500 Theobroma cacao HOM05D001410 ORTHO05D006840 1.5e-12 76.3 183 35.0
Actinidia03133 Actinidia chinensis HOM05D001410 ORTHO05D006840 1.9e-12 75.9 183 35.0
Lj1C1004T3 Lonicera japonica HOM05D001410 ORTHO05D006840 1.9e-12 75.9 183 34.4
BraA10t43089Z Brassica rapa HOM05D001410 ORTHO05D006840 2.5e-12 75.5 134 37.3
Lj2g0023395 Lotus japonicus HOM05D001410 ORTHO05D006840 2.5e-12 75.5 183 35.0
Psat5g045320 Pisum sativum HOM05D001410 ORTHO05D006840 2.5e-12 75.5 183 34.4
GSVIVG01028877001 Vitis vinifera HOM05D001410 ORTHO05D006840 2.5e-12 75.5 183 34.4
Ah.16g106580 Amaranthus hybridus HOM05D001410 ORTHO05D006840 3.3e-12 75.1 183 32.8
EL10Ac2g03345 Beta vulgaris HOM05D001410 ORTHO05D006840 3.3e-12 75.1 183 33.3
Migut.F01092 Erythranthe guttata HOM05D001410 ORTHO05D006840 3.3e-12 75.1 183 33.3
Medtr3g100910 Medicago truncatula HOM05D001410 ORTHO05D006840 3.3e-12 75.1 183 34.4
Potri.017G142500 Populus trichocarpa HOM05D001410 ORTHO05D006840 3.3e-12 75.1 183 35.0
DCAR_009384 Daucus carota HOM05D001410 ORTHO05D006840 4.3e-12 74.7 183 33.9
DCAR_014517 Daucus carota HOM05D001410 ORTHO05D006840 4.3e-12 74.7 183 33.9
Atru.chr1.387 Acer truncatum HOM05D001410 ORTHO05D006840 5.6e-12 74.3 183 33.9
Peaxi162Scf00647g00325 Petunia axillaris HOM05D001410 ORTHO05D006840 5.6e-12 74.3 183 33.3
SGA_v2.0_scaffold10G05300 Striga asiatica HOM05D001410 ORTHO05D006840 5.6e-12 74.3 183 32.8
Atru.chr1.370 Acer truncatum HOM05D001410 ORTHO05D006840 7.3e-12 73.9 183 33.9
Atru.ctg97_1.1 Acer truncatum HOM05D001410 ORTHO05D006840 7.3e-12 73.9 183 33.9
Ca_15983_v3 Cicer arietinum L. HOM05D001410 ORTHO05D006840 7.3e-12 73.9 183 34.4
Haze_00033 Corylus avellana HOM05D001410 ORTHO05D006840 7.3e-12 73.9 183 34.4
arahy.Tifrunner.gnm1.ann1.BA6YY5 Arachis hypogaea HOM05D001410 ORTHO05D006840 9.6e-12 73.6 183 34.4
Ciclev10004659m.g Citrus clementina HOM05D001410 ORTHO05D006840 9.6e-12 73.6 183 33.3
TWI14G0872 Tripterygium wilfordii HOM05D001410 ORTHO05D006840 9.6e-12 73.6 157 34.4
Cc02_g02500 Coffea canephora HOM05D001410 ORTHO05D006840 1.2e-11 73.2 183 33.3
Nitab4.5_0005056g0110 Nicotiana tabacum HOM05D001410 ORTHO05D006840 1.2e-11 73.2 183 32.8
SalBow2G1075 Salvia bowleyana HOM05D001410 ORTHO05D006840 1.2e-11 73.2 183 32.8
SalBow2G2133 Salvia bowleyana HOM05D001410 ORTHO05D006840 1.2e-11 73.2 183 32.8
TAR636G1793 Trochodendron aralioides HOM05D001410 ORTHO05D006840 1.2e-11 73.2 183 33.9
AL8G26980 Arabidopsis lyrata HOM05D001410 ORTHO05D006840 1.6e-11 72.8 183 33.3
Carub.0008s1264 Capsella rubella HOM05D001410 ORTHO05D006840 1.6e-11 72.8 183 33.3
Zm00001eb300750 Zea mays HOM05D001410 ORTHO05D006840 1.6e-11 72.8 183 32.2
CARHR265490 Cardamine hirsuta HOM05D001410 ORTHO05D006840 2.1e-11 72.4 183 33.3
Lalb_Chr02g0141201 Lupinus albus HOM05D001410 ORTHO05D006840 2.1e-11 72.4 183 33.9
Manes.14G023300 Manihot esculenta HOM05D001410 ORTHO05D006840 2.1e-11 72.4 183 33.3
Nn1g01600 Nelumbo nucifera HOM05D001410 ORTHO05D006840 2.1e-11 72.4 183 33.3
ATR0661G435 Amborella trichopoda HOM05D001410 ORTHO05D006840 2.8e-11 72.0 183 31.7
Aqoxy7G00253 Aquilegia oxysepala HOM05D001410 ORTHO05D006840 2.8e-11 72.0 183 32.2
Cfa016279 Carpinus fangiana HOM05D001410 ORTHO05D006840 2.8e-11 72.0 183 33.9
Nitab4.5_0001611g0080 Nicotiana tabacum HOM05D001410 ORTHO05D006840 2.8e-11 72.0 183 32.2
Aa31LG3G8870 Aethionema arabicum HOM05D001410 ORTHO05D006840 3.6e-11 71.6 183 33.3
Thhalv10013193m.g Eutrema salsugineum HOM05D001410 ORTHO05D006840 3.6e-11 71.6 183 32.8
Sc09g0007270 Simmondsia chinensis HOM05D001410 ORTHO05D006840 3.6e-11 71.6 186 32.8
AT5G52520 Arabidopsis thaliana HOM05D001410 ORTHO05D006840 4.7e-11 71.2 183 32.8
A02p11770 Brassica napus HOM05D001410 ORTHO05D006840 4.7e-11 71.2 183 32.8
BNapus_Darmor_BZH_scaffold_232p00120 Brassica napus HOM05D001410 ORTHO05D006840 4.7e-11 71.2 183 32.8
C02p19590 Brassica napus HOM05D001410 ORTHO05D006840 4.7e-11 71.2 183 32.8
BolC2t08096H Brassica oleracea HOM05D001410 ORTHO05D006840 4.7e-11 71.2 183 32.8
BraA02t06242Z Brassica rapa HOM05D001410 ORTHO05D006840 4.7e-11 71.2 183 32.8
Duzib068G1356 Durio zibethinus HOM05D001410 ORTHO05D006840 4.7e-11 71.2 183 33.3
HanXRQChr04g0120461 Helianthus annuus HOM05D001410 ORTHO05D006840 4.7e-11 71.2 183 33.9
Hma1.2p1_0327F.1_g126300 Hydrangea macrophylla HOM05D001410 ORTHO05D006840 4.7e-11 71.2 139 38.1
THA.LOC104811964 Tarenaya hassleriana HOM05D001410 ORTHO05D006840 4.7e-11 71.2 183 33.3
arahy.Tifrunner.gnm1.ann1.18GXDP Arachis hypogaea HOM05D001410 ORTHO05D006840 6.2e-11 70.9 183 33.9
BcaC04g20579 Brassica carinata HOM05D001410 ORTHO05D006840 6.2e-11 70.9 183 32.8
C09p41940 Brassica napus HOM05D001410 ORTHO05D006840 6.2e-11 70.9 183 32.8
BolC9t57078H Brassica oleracea HOM05D001410 ORTHO05D006840 6.2e-11 70.9 183 32.8
CSS0001759 Camellia sinensis var. sinensis HOM05D001410 ORTHO05D006840 6.2e-11 70.9 141 37.6
Dinv28396 Davidia involucrata HOM05D001410 ORTHO05D006840 6.2e-11 70.9 141 36.9
HanXRQChr07g0206941 Helianthus annuus HOM05D001410 ORTHO05D006840 6.2e-11 70.9 183 33.3
Sp6g14710 Schrenkiella parvula HOM05D001410 ORTHO05D006840 6.2e-11 70.9 183 32.8
BcaC03g14524 Brassica carinata HOM05D001410 ORTHO05D006840 8.1e-11 70.5 183 32.8
Lsat_1_v5_gn_2_131140 Lactuca sativa HOM05D001410 ORTHO05D006840 8.1e-11 70.5 183 32.8
MCO06G048 Micromonas commoda HOM05D001410 ORTHO05D006840 8.1e-11 70.5 184 30.4
PGSC0003DMG400027526 Solanum tuberosum HOM05D001410 ORTHO05D006840 1.1e-10 70.1 183 31.7
BcaB05g21963 Brassica carinata HOM05D001410 ORTHO05D006840 1.4e-10 69.7 183 32.8
Solyc01g096870.4 Solanum lycopersicum HOM05D001410 ORTHO05D006840 1.4e-10 69.7 183 31.7
BcaB08g35606 Brassica carinata HOM05D001410 ORTHO05D006840 1.8e-10 69.3 183 32.2
Oeu045369.1 Olea europaea HOM05D001410 ORTHO05D006840 1.8e-10 69.3 183 32.8
SMO114G0131 Selaginella moellendorffii HOM05D001410 ORTHO05D006840 2.4e-10 68.9 155 34.2
unitig_60.g25549 Utricularia gibba HOM05D001410 ORTHO05D006840 2.4e-10 68.9 111 42.3
ECA238G2766 Erigeron canadensis HOM05D001410 ORTHO05D006840 3.1e-10 68.6 183 32.2
MBI04_g30786_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D006840 3.1e-10 68.6 183 31.7
Rhsim09G0200200 Rhododendron simsii HOM05D001410 ORTHO05D006840 3.1e-10 68.6 111 44.1
Duzib205G1919 Durio zibethinus HOM05D001410 ORTHO05D016552 4.0e-10 68.2 174 33.9
Os07g0165000 Oryza sativa ssp. japonica HOM05D001410 ORTHO05D006840 4.0e-10 68.2 183 31.7
Hund12464 Selenicereus undatus HOM05D001410 ORTHO05D006840 4.0e-10 68.2 183 31.1
VMungo0464G1027 Vigna mungo HOM05D001410 ORTHO05D016552 4.0e-10 68.2 111 44.1
Sopen01g040580 Solanum pennellii HOM05D001410 ORTHO05D006840 5.2e-10 67.8 183 31.1
PSO541G3847 Papaver somniferum HOM05D001410 ORTHO05D006840 8.9e-10 67.0 183 31.1
PSO675G7606 Papaver somniferum HOM05D001410 ORTHO05D006840 8.9e-10 67.0 183 31.1
AUR62037623 Chenopodium quinoa HOM05D001410 ORTHO05D006840 1.2e-09 66.6 140 34.3
Prupe.2G299500 Prunus persica HOM05D001410 ORTHO05D006840 1.5e-09 66.2 111 41.4
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 2.0e-09 65.9 139 36.7
Oeu033106.1 Olea europaea HOM05D001410 ORTHO05D006840 2.6e-09 65.5 111 42.3
AagrBONN_evm.TU.Sc2ySwM_228.2217 Anthoceros agrestis HOM05D001410 ORTHO05D006840 4.4e-09 64.7 183 29.5
MBI04_g21149_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D006840 4.4e-09 64.7 159 30.8
CDE11G0932 Ceratophyllum demersum HOM05D001410 ORTHO05D006840 5.8e-09 64.3 183 30.1
PRCOL_00004237 Prasinoderma coloniale HOM05D001410 ORTHO05D006840 3.8e-08 61.6 155 29.0
SEGI_03261 Sequoiadendron giganteum HOM05D001410 ORTHO05D006840 3.8e-08 61.6 183 29.5
Mapoly0051s0001 Marchantia polymorpha HOM05D001410 ORTHO05D006840 4.9e-08 61.2 153 30.1
Pp3c21_580 Physcomitrium patens HOM05D001410 ORTHO05D006840 8.4e-08 60.5 193 28.0
HPP92_028053 Vanilla planifolia HOM05D001410 ORTHO05D006840 2.4e-07 58.9 183 29.0
AUR62040861 Chenopodium quinoa HOM05D001410 ORTHO05D006840 2.7e-06 55.5 67 47.8
BcaNung07179 Brassica carinata HOM05D001410 ORTHO05D006840 6.0e-06 54.3 104 34.6
Cre09.g406200 Chlamydomonas reinhardtii HOM05D001410 ORTHO05D006840 6.0e-06 54.3 183 29.0


User provided reference genes

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