Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.1e-181 639.8 328 100.0
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 2.1e-167 592.4 329 92.1
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 3.1e-163 578.6 328 90.5
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 5.5e-160 567.8 328 87.8
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 9.4e-160 567.0 328 88.7
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 7.7e-146 520.8 330 78.8
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 7.2e-144 514.2 326 79.1
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 4.0e-142 508.4 330 76.1
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 5.2e-142 508.1 331 78.9
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 5.2e-142 508.1 327 78.6
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 8.8e-142 507.3 331 79.2
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.2e-141 506.9 331 78.5
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 4.4e-141 505.0 355 73.5
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 5.7e-141 504.6 328 76.2
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 1.4e-139 500.0 328 73.8
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 5.4e-139 498.0 329 77.2
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 1.0e-137 493.8 323 75.9
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 1.0e-137 493.8 327 77.1
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 2.3e-137 492.7 328 75.3
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 6.6e-137 491.1 329 75.4
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 8.6e-137 490.7 329 75.4
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 8.6e-137 490.7 329 75.7
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 1.1e-136 490.3 329 75.7
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 1.1e-136 490.3 348 72.4
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 1.5e-136 490.0 326 74.8
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 3.3e-136 488.8 330 75.2
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 7.3e-136 487.6 326 73.0
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.2e-135 486.9 328 73.8
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 6.1e-135 484.6 327 75.2
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 1.8e-134 483.0 326 72.4
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 3.0e-134 482.3 329 72.9
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 4.0e-134 481.9 326 73.3
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 5.2e-134 481.5 327 74.9
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 6.8e-134 481.1 328 74.1
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 1.2e-133 480.3 327 72.8
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 3.4e-133 478.8 327 72.5
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 5.7e-133 478.0 327 73.4
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 9.8e-133 477.2 327 72.2
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 1.3e-132 476.9 326 72.4
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 3.7e-132 475.3 326 72.1
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 1.4e-131 473.4 334 73.1
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 4.1e-131 471.9 330 73.6
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 1.2e-130 470.3 328 71.0
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 2.0e-130 469.5 328 70.7
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 2.0e-130 469.5 401 63.3
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 4.6e-130 468.4 329 73.3
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 7.8e-130 467.6 358 68.4
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 1.3e-129 466.8 362 65.7
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 2.3e-129 466.1 294 79.6
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 4.3e-128 461.8 324 73.1
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 1.6e-127 459.9 327 72.2
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.3e-126 456.1 327 70.6
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 2.3e-126 456.1 329 70.5
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 5.2e-126 454.9 327 70.6
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 5.2e-126 454.9 327 71.3
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 5.2e-126 454.9 329 69.3
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 8.9e-126 454.1 328 69.8
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 1.2e-125 453.8 327 70.6
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 1.5e-125 453.4 327 70.9
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 2.0e-125 453.0 329 69.0
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 5.8e-125 451.4 320 70.9
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 1.7e-124 449.9 328 70.4
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.7e-124 449.9 327 70.9
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 3.7e-124 448.7 327 69.4
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 3.7e-124 448.7 327 70.6
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 4.9e-124 448.4 327 70.3
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.4e-123 446.8 327 70.0
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 1.9e-123 446.4 327 70.0
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 3.2e-123 445.7 328 70.1
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 4.1e-123 445.3 327 69.1
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 4.1e-123 445.3 327 69.7
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 9.2e-123 444.1 324 71.0
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 1.6e-122 443.4 327 69.4
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 3.5e-122 442.2 327 69.1
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 7.8e-122 441.0 330 68.2
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 1.7e-121 439.9 278 78.1
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 5.0e-121 438.3 327 68.5
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 4.3e-120 435.3 327 68.5
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 9.5e-120 434.1 331 68.3
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 2.8e-119 432.6 324 69.4
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 5.2e-118 428.3 328 64.0
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 1.5e-117 426.8 327 64.8
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 1.5e-117 426.8 331 67.1
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 3.4e-117 425.6 327 65.7
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 3.4e-117 425.6 327 67.0
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 9.8e-117 424.1 327 64.8
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.3e-116 423.7 327 64.5
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 2.9e-116 422.5 327 64.5
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 3.7e-116 422.2 322 65.8
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 4.9e-116 421.8 327 64.8
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 1.1e-115 420.6 327 64.2
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 1.9e-115 419.9 327 63.3
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 2.4e-115 419.5 327 64.2
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 3.2e-115 419.1 324 64.5
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 1.2e-114 417.2 337 62.9
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 3.5e-114 415.6 327 63.9
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 6.0e-114 414.8 327 64.2
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 3.3e-112 409.1 317 65.9
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 3.3e-112 409.1 327 66.7
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 3.6e-111 405.6 323 64.4
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 4.0e-110 402.1 273 75.1
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 8.9e-110 401.0 325 64.6
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 2.6e-109 399.4 327 63.0
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 3.4e-109 399.1 327 64.8
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 4.1e-107 392.1 323 61.6
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 2.1e-103 379.8 327 59.9
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 2.1e-98 363.2 330 58.2
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.9e-96 356.7 329 61.1
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 5.6e-96 355.1 322 59.3
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 9.6e-88 327.8 329 54.1
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 1.6e-87 327.0 324 53.7
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 2.8e-87 326.2 326 61.0
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 3.6e-87 325.9 319 54.9
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 8.1e-87 324.7 275 60.4
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 9.0e-86 321.2 329 54.4
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 2.9e-84 316.2 322 50.6
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 4.9e-84 315.5 319 54.9
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 1.3e-81 307.4 176 85.2
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 1.7e-76 290.4 322 46.9
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 2.8e-71 273.1 197 70.6
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 8.5e-68 261.5 275 47.3
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 3.6e-66 256.1 186 71.5
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 9.1e-62 241.5 196 63.8
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 5.9e-61 238.8 213 57.7
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 4.2e-59 232.6 272 50.7
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 3.6e-58 229.6 141 77.3
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.3e-57 226.9 329 42.2
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 2.4e-54 216.9 133 78.2
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 2.4e-54 216.9 302 40.4
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 3.8e-52 209.5 131 77.1
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 5.0e-52 209.1 158 63.3
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 6.5e-52 208.8 183 58.5
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 4.8e-47 192.6 131 71.8
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 8.2e-47 191.8 139 64.7
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 1.5e-43 181.0 128 71.1
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 3.2e-43 179.9 139 67.6
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 3.2e-43 179.9 269 40.1
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 2.1e-42 177.2 151 62.3
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 3.3e-40 169.9 262 39.3
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.3e-39 167.9 179 50.8
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 3.7e-39 166.4 263 38.8
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 4.1e-38 162.9 95 77.9
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 5.3e-38 162.5 117 68.4
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 8.0e-34 148.7 153 48.4
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 2.6e-32 143.7 146 50.0
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.7e-31 139.8 147 50.3
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 3.7e-31 139.8 201 41.3
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 8.3e-31 138.7 82 78.0
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 5.0e-28 129.4 131 47.3
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 1.1e-27 128.3 176 42.6
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.5e-27 127.1 128 50.0
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 6.1e-26 122.5 117 52.1
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 8.0e-26 122.1 196 40.3
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 1.3e-23 114.8 68 80.9
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 3.4e-16 90.1 79 58.2
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 3.4e-16 90.1 79 58.2
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 1.1e-14 85.1 76 59.2
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 5.4e-14 82.8 60 68.3
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 3.6e-10 70.1 121 38.8
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 1.7e-07 61.2 58 55.2
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 1.7e-07 61.2 56 60.7


User provided reference genes

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