Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10026528m.g Citrus clementina HOM05D000399 ORTHO05D010012 1.0e-116 423.3 201 100.0
Duzib235G0300 Durio zibethinus HOM05D000399 ORTHO05D010012 1.6e-37 160.2 212 45.8
Manes.11G064002 Manihot esculenta HOM05D000399 ORTHO05D010012 2.8e-37 159.5 228 40.8
TWI18G0904 Tripterygium wilfordii HOM05D000399 ORTHO05D010012 2.6e-35 152.9 196 47.4
Manes.04G105300 Manihot esculenta HOM05D000399 ORTHO05D010012 4.4e-35 152.1 223 41.7
Thecc.06G038100 Theobroma cacao HOM05D000399 ORTHO05D010012 5.8e-35 151.8 217 44.7
Duzib160G0247 Durio zibethinus HOM05D000399 ORTHO05D010012 1.9e-33 146.7 226 45.1
Potri.003G179700 Populus trichocarpa HOM05D000399 ORTHO05D010012 6.0e-32 141.7 161 50.3
QL05p034335 Quercus lobata HOM05D000399 ORTHO05D010012 6.0e-32 141.7 96 64.6
Cfa001902 Carpinus fangiana HOM05D000399 ORTHO05D010012 7.8e-32 141.4 91 71.4
BcaC03g15940 Brassica carinata HOM05D000399 ORTHO05D010012 6.6e-31 138.3 179 44.7
C02p37020 Brassica napus HOM05D000399 ORTHO05D010012 1.1e-30 137.5 173 44.5
A02p23280 Brassica napus HOM05D000399 ORTHO05D010012 2.5e-30 136.3 179 44.1
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 2.5e-30 136.3 94 62.8
BolC2t09718H Brassica oleracea HOM05D000134 ORTHO05D002396 5.6e-30 135.2 186 43.0
Gohir.A09G091200 Gossypium hirsutum HOM05D000399 ORTHO05D010012 7.3e-30 134.8 191 45.5
Hma1.2p1_0135F.1_g061800 Hydrangea macrophylla HOM05D000399 ORTHO05D010012 7.3e-30 134.8 123 55.3
BraA02t07324Z Brassica rapa HOM05D000399 ORTHO05D010012 2.1e-29 133.3 185 43.8
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 2.8e-29 132.9 190 44.2
AL2G40790 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 8.1e-29 131.3 172 43.0
arahy.Tifrunner.gnm1.ann1.E6VFRG Arachis hypogaea HOM05D000399 ORTHO05D010012 1.1e-28 131.0 91 62.6
Cpa.g.sc10.115 Carica papaya HOM05D000399 ORTHO05D010012 1.1e-28 131.0 91 61.5
CARHR073870 Cardamine hirsuta HOM05D000399 ORTHO05D010012 1.4e-28 130.6 186 41.9
Cpa.g.sc12.176 Carica papaya HOM05D000399 ORTHO05D010012 1.4e-28 130.6 194 40.2
COL.COLO4_26655 Corchorus olitorius HOM05D000399 ORTHO05D010012 1.8e-28 130.2 213 41.8
Gorai.006G107400 Gossypium raimondii HOM05D000399 ORTHO05D010012 1.8e-28 130.2 191 44.0
Hma1.2p1_0182F.1_g080650 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 3.1e-28 129.4 93 66.7
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 8.9e-28 127.9 91 64.8
VMungo1080G1791 Vigna mungo HOM05D000399 ORTHO05D010012 8.9e-28 127.9 181 40.3
THA.LOC104813580 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 1.2e-27 127.5 140 47.9
BcaB05g25237 Brassica carinata HOM05D000399 ORTHO05D010012 2.0e-27 126.7 178 41.6
Haze_19295 Corylus avellana HOM05D000399 ORTHO05D000304 3.4e-27 125.9 93 61.3
THA.LOC104812446 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 4.4e-27 125.6 194 39.7
ClCG07G012380 Citrullus lanatus HOM05D000399 ORTHO05D010012 5.8e-27 125.2 90 61.1
Eucgr.J03093 Eucalyptus grandis HOM05D000399 ORTHO05D010012 5.8e-27 125.2 177 43.5
Thhalv10019137m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 5.8e-27 125.2 199 38.7
Sp5g35110 Schrenkiella parvula HOM05D000399 ORTHO05D010012 5.8e-27 125.2 193 41.5
RcHm_v2.0_Chr2g0086421 Rosa chinensis HOM05D000399 ORTHO05D000304 7.6e-27 124.8 90 61.1
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 1.7e-26 123.6 100 60.0
CsaV3_4G001760 Cucumis sativus L. HOM05D000399 ORTHO05D010012 3.8e-26 122.5 215 37.7
PSO832G3766 Papaver somniferum HOM05D000399 ORTHO05D000304 6.4e-26 121.7 172 41.9
Glyma.15G004500 Glycine max HOM05D000399 ORTHO05D010012 8.4e-26 121.3 186 39.2
Phvul.005G180800 Phaseolus vulgaris HOM05D000399 ORTHO05D010012 8.4e-26 121.3 187 37.4
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 1.1e-25 120.9 93 58.1
QL02p091746 Quercus lobata HOM05D000399 ORTHO05D010012 1.1e-25 120.9 95 58.9
Prupe.3G095800 Prunus persica HOM05D000399 ORTHO05D010012 1.4e-25 120.6 90 60.0
Aa31LG4G930 Aethionema arabicum HOM05D000399 ORTHO05D010012 1.9e-25 120.2 185 40.0
CSS0047995 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.9e-25 120.2 85 63.5
Thecc.09G036900 Theobroma cacao HOM05D000399 ORTHO05D000304 1.9e-25 120.2 91 59.3
PGR142G0104 Punica granatum HOM05D000399 ORTHO05D000304 3.2e-25 119.4 82 64.6
MELO3C017858.2 Cucumis melo HOM05D000399 ORTHO05D010012 4.2e-25 119.0 218 37.2
FAN19G1338 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.2e-24 117.5 111 48.6
CsaV3_1G028590 Cucumis sativus L. HOM05D000399 ORTHO05D000304 1.6e-24 117.1 89 60.7
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 1.6e-24 117.1 85 58.8
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 2.1e-24 116.7 194 40.2
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 2.1e-24 116.7 194 40.2
Sopen07g001140 Solanum pennellii HOM05D000399 ORTHO05D000304 2.1e-24 116.7 92 56.5
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 2.7e-24 116.3 80 66.2
Aa31LG7G440 Aethionema arabicum HOM05D000399 ORTHO05D010012 2.7e-24 116.3 82 62.2
CSS0007492 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 2.7e-24 116.3 116 50.0
CAN.G407.44 Capsicum annuum HOM05D000399 ORTHO05D010012 2.7e-24 116.3 90 58.9
Ciclev10007241m.g Citrus clementina HOM05D000399 ORTHO05D000304 2.7e-24 116.3 89 60.7
Solyc07g005030.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.7e-24 116.3 92 56.5
SGA_v2.0_scaffold183G39849 Striga asiatica HOM05D000399 ORTHO05D000304 2.7e-24 116.3 86 58.1
Nitab4.5_0004050g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 3.5e-24 115.9 90 58.9
TPR.G19174 Trifolium pratense HOM05D000399 ORTHO05D010012 3.5e-24 115.9 98 55.1
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 4.6e-24 115.5 146 41.8
FvH4_1g01480 Fragaria vesca HOM05D000399 ORTHO05D000304 6.0e-24 115.2 111 47.7
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 6.0e-24 115.2 85 58.8
Actinidia18233 Actinidia chinensis HOM05D000399 ORTHO05D010012 7.8e-24 114.8 80 67.5
MELO3C010254.2 Cucumis melo HOM05D000399 ORTHO05D000304 7.8e-24 114.8 88 61.4
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 7.8e-24 114.8 91 56.0
Peaxi162Scf00347g00328 Petunia axillaris HOM05D000399 ORTHO05D000304 7.8e-24 114.8 89 58.4
CAN.G520.37 Capsicum annuum HOM05D000399 ORTHO05D000304 1.0e-23 114.4 90 55.6
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 1.0e-23 114.4 110 54.5
Sed0002244 Sechium edule HOM05D000399 ORTHO05D000304 1.0e-23 114.4 89 59.6
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 1.0e-23 114.4 88 58.0
Aqoxy7G03507 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 1.7e-23 113.6 125 48.0
BolC6t40403H Brassica oleracea HOM05D000134 ORTHO05D002396 1.7e-23 113.6 82 59.8
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 1.7e-23 113.6 117 48.7
Gohir.D05G051600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.7e-23 113.6 91 56.0
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 1.7e-23 113.6 91 56.0
AUR62011271 Chenopodium quinoa HOM05D000399 ORTHO05D000304 2.3e-23 113.2 91 59.3
PGR031G2642 Punica granatum HOM05D000399 ORTHO05D010012 2.3e-23 113.2 192 39.1
vmacro19037 Vaccinium macrocarpon HOM05D000399 ORTHO05D010012 2.3e-23 113.2 84 63.1
Thhalv10012426m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 3.0e-23 112.8 115 46.1
FAN28G2728 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.0e-23 112.8 176 38.1
Nitab4.5_0000416g0080 Nicotiana tabacum HOM05D000399 ORTHO05D000304 3.0e-23 112.8 90 57.8
Duzib168G1954 Durio zibethinus HOM05D000399 ORTHO05D000304 3.9e-23 112.5 88 55.7
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 5.1e-23 112.1 85 61.2
Nitab4.5_0001454g0050 Nicotiana tabacum HOM05D000399 ORTHO05D010012 5.1e-23 112.1 100 58.0
Ca_01025_v3 Cicer arietinum L. HOM05D000263 ORTHO05D000213 6.6e-23 111.7 89 56.2
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 8.7e-23 111.3 91 58.2
Potri.006G188800 Populus trichocarpa HOM05D000399 ORTHO05D000304 8.7e-23 111.3 80 63.8
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 8.7e-23 111.3 81 61.7
Lj7C452G5 Lonicera japonica HOM05D000399 ORTHO05D000304 1.5e-22 110.5 124 44.4
Carub.0002s2691 Capsella rubella HOM05D000399 ORTHO05D010012 2.5e-22 109.8 121 44.6
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 2.5e-22 109.8 80 65.0
Sed0016429 Sechium edule HOM05D000399 ORTHO05D010012 2.5e-22 109.8 195 34.9
TAR626G0740 Trochodendron aralioides HOM05D007151 ORTHO05D009056 2.5e-22 109.8 72 70.8
Glyma.13G156500 Glycine max HOM05D000399 ORTHO05D000304 3.3e-22 109.4 98 54.1
MD15G1157600 Malus domestica HOM05D000399 ORTHO05D000304 3.3e-22 109.4 90 52.2
Sc08g0005100 Simmondsia chinensis HOM05D000399 ORTHO05D010012 4.3e-22 109.0 116 44.0
Actinidia38350 Actinidia chinensis HOM05D000399 ORTHO05D000304 5.6e-22 108.6 90 51.1
Nn8g39754 Nelumbo nucifera HOM05D000399 ORTHO05D000304 5.6e-22 108.6 91 56.0
Sabra06G0144400 Salix brachista HOM05D000399 ORTHO05D000304 5.6e-22 108.6 80 61.2
Lj4g0019891 Lotus japonicus HOM05D000399 ORTHO05D000304 9.6e-22 107.8 82 59.8
Sp1g14150 Schrenkiella parvula HOM05D000399 ORTHO05D010012 9.6e-22 107.8 170 35.9
Zm00001eb426330 Zea mays HOM05D000399 ORTHO05D000304 9.6e-22 107.8 175 35.4
AT5G20320 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 1.2e-21 107.5 115 46.1
Migut.K00362 Erythranthe guttata HOM05D000399 ORTHO05D000304 1.2e-21 107.5 86 58.1
Glyma.17G104100 Glycine max HOM05D000399 ORTHO05D000304 1.2e-21 107.5 166 39.8
THA.LOC104811019 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 1.2e-21 107.5 92 54.3
EL10Ac8g18835 Beta vulgaris HOM05D000399 ORTHO05D000304 1.6e-21 107.1 82 58.5
Psat5g304480 Pisum sativum HOM05D000399 ORTHO05D010012 1.6e-21 107.1 100 54.0
CDE08G0493 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 2.1e-21 106.7 86 57.0
AL6G31870 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 2.8e-21 106.3 115 46.1
EL10Ac8g18832 Beta vulgaris HOM05D000399 ORTHO05D000304 2.8e-21 106.3 82 57.3
EL10Ac8g18834 Beta vulgaris HOM05D000399 ORTHO05D000304 2.8e-21 106.3 82 57.3
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 3.6e-21 105.9 133 40.6
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 3.6e-21 105.9 81 58.0
Medtr4g116860 Medicago truncatula HOM05D000399 ORTHO05D000304 6.2e-21 105.1 142 41.5
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 8.1e-21 104.8 85 55.3
SGA_v2.0_scaffold5G02750 Striga asiatica HOM05D000399 ORTHO05D010012 8.1e-21 104.8 89 51.7
Sp6g24100 Schrenkiella parvula HOM05D000399 ORTHO05D000304 1.4e-20 104.0 118 44.1
ATR0629G135 Amborella trichopoda HOM05D000399 ORTHO05D000304 3.1e-20 102.8 190 33.2
FAN15G2526 Fragaria x ananassa HOM05D032538 ORTHO05D010012 3.1e-20 102.8 81 56.8
MSTRG.19631 Avicennia marina HOM05D000399 ORTHO05D000304 5.3e-20 102.1 80 61.2
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 6.9e-20 101.7 84 59.5
Lsat_1_v5_gn_5_90720 Lactuca sativa HOM05D000399 ORTHO05D000304 9.0e-20 101.3 82 58.5
Psat4g034160 Pisum sativum HOM05D000399 ORTHO05D000304 1.2e-19 100.9 80 58.8
Carub.0006s1871 Capsella rubella HOM05D000399 ORTHO05D000304 1.5e-19 100.5 98 48.0
Aa31LG1G14290 Aethionema arabicum HOM05D000399 ORTHO05D000304 2.0e-19 100.1 80 58.8
CARHR192510 Cardamine hirsuta HOM05D000399 ORTHO05D000304 2.0e-19 100.1 95 52.6
DCAR_019363 Daucus carota HOM05D000399 ORTHO05D000304 2.6e-19 99.8 162 40.1
HanXRQChr16g0500081 Helianthus annuus HOM05D000399 ORTHO05D010012 2.6e-19 99.8 86 52.3
Ca_21605_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 3.4e-19 99.4 119 42.9
Sopen03g036060 Solanum pennellii HOM05D000399 ORTHO05D010012 4.4e-19 99.0 68 64.7
HPP92_005311 Vanilla planifolia HOM05D000399 ORTHO05D000304 5.8e-19 98.6 79 54.4
Ah.09g226570 Amaranthus hybridus HOM05D000399 ORTHO05D000304 7.6e-19 98.2 82 56.1
HanXRQChr12g0356941 Helianthus annuus HOM05D000399 ORTHO05D000304 7.6e-19 98.2 83 55.4
AT4G00420 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 9.9e-19 97.8 99 50.5
Lj3g0003967 Lotus japonicus HOM05D000399 ORTHO05D010012 1.3e-18 97.4 83 54.2
AL1G28000 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 2.2e-18 96.7 92 51.1
Carub.0001s1565 Capsella rubella HOM05D000399 ORTHO05D010012 2.9e-18 96.3 121 43.0
Cc06_g07320 Coffea canephora HOM05D000399 ORTHO05D000304 2.9e-18 96.3 91 49.5
DCAR_019361 Daucus carota HOM05D000399 ORTHO05D000304 2.9e-18 96.3 86 52.3
Os04g0509300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 2.9e-18 96.3 82 52.4
arahy.Tifrunner.gnm1.ann1.ZFL6Z0 Arachis hypogaea HOM05D000399 ORTHO05D000304 3.8e-18 95.9 83 54.2
SalBow1G6743 Salvia bowleyana HOM05D000399 ORTHO05D000304 4.9e-18 95.5 86 52.3
Cpa.g.sc397.6 Carica papaya HOM05D000361 ORTHO05D008498 6.4e-18 95.1 85 55.3
Thhalv10009652m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 6.4e-18 95.1 82 53.7
BcaB08g36493 Brassica carinata HOM05D000399 ORTHO05D000304 8.4e-18 94.7 115 43.5
ECA232G1568 Erigeron canadensis HOM05D000399 ORTHO05D010012 8.4e-18 94.7 89 49.4
Lsat_1_v5_gn_4_85921 Lactuca sativa HOM05D000399 ORTHO05D010012 8.4e-18 94.7 87 49.4
DCAR_008820 Daucus carota HOM05D000399 ORTHO05D000304 1.1e-17 94.4 108 49.1
Hund21616 Selenicereus undatus HOM05D000399 ORTHO05D000304 2.4e-17 93.2 100 48.0
TPR.G15773 Trifolium pratense HOM05D000399 ORTHO05D000304 2.4e-17 93.2 80 53.8
Os09g0416500 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D010012 3.2e-17 92.8 86 48.8
Zm00001eb312740 Zea mays HOM05D000399 ORTHO05D010012 1.2e-16 90.9 85 52.9
CARHR016360 Cardamine hirsuta HOM05D000399 ORTHO05D010012 2.7e-16 89.7 180 33.9
BolC9t58455H Brassica oleracea HOM05D000399 ORTHO05D000304 4.6e-16 89.0 116 42.2
C09p55870 Brassica napus HOM05D000399 ORTHO05D000304 1.0e-15 87.8 116 41.4
BraA10t44037Z Brassica rapa HOM05D000399 ORTHO05D000304 1.0e-15 87.8 116 42.2
A10p19620 Brassica napus HOM05D000399 ORTHO05D000304 2.3e-15 86.7 99 44.4
BolC5t30140H Brassica oleracea HOM05D002847 ORTHO05D003155 4.3e-14 82.4 177 30.5
BraA06t24361Z Brassica rapa HOM05D002847 ORTHO05D003155 7.3e-14 81.6 90 43.3
A06p11910 Brassica napus HOM05D002847 ORTHO05D003155 2.1e-13 80.1 90 42.2
C05p14090 Brassica napus HOM05D002847 ORTHO05D003155 2.1e-13 80.1 175 30.3
Haze_16641 Corylus avellana HOM05D000399 ORTHO05D010012 3.6e-13 79.3 52 75.0
BcaC05g30483 Brassica carinata HOM05D000399 ORTHO05D010012 3.1e-12 76.3 101 40.6
arahy.Tifrunner.gnm1.ann1.I9YAW2 Arachis hypogaea HOM05D000399 ORTHO05D010012 5.3e-12 75.5 65 52.3
arahy.Tifrunner.gnm1.ann1.F8AJCT Arachis hypogaea HOM05D000399 ORTHO05D010012 9.9e-11 71.2 55 54.5
MD17G1220100 Malus domestica HOM05D000399 ORTHO05D010012 2.9e-10 69.7 49 63.3
AT1G80650 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 8.4e-10 68.2 130 33.1
Nitab4.5_0006291g0070 Nicotiana tabacum HOM05D000399 ORTHO05D010012 2.1e-08 63.5 57 59.6
SEGI_19919 Sequoiadendron giganteum HOM05D000399 ORTHO05D010012 3.5e-08 62.8 96 36.5
Manes.14G140128 Manihot esculenta HOM05D000399 ORTHO05D000304 2.5e-06 56.6 32 71.9
CSS0046958 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D010012 5.6e-06 55.5 69 43.5


User provided reference genes

Program Settings