Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010872m.g Citrus clementina HOM05D005175 ORTHO05D006302 9.9e-52 206.5 101 100.0
Ciclev10009310m.g Citrus clementina HOM05D005175 ORTHO05D006302 2.0e-44 182.2 108 85.2
Atru.chr7.2095 Acer truncatum HOM05D005175 ORTHO05D006302 6.0e-41 170.6 108 79.6
Atru.chr7.2109 Acer truncatum HOM05D005175 ORTHO05D006302 7.9e-41 170.2 108 78.7
Sed0006550 Sechium edule HOM05D005175 ORTHO05D006302 1.3e-40 169.5 108 78.7
Dinv14260 Davidia involucrata HOM05D005175 ORTHO05D006302 1.8e-40 169.1 108 78.7
Eucgr.C02924 Eucalyptus grandis HOM05D005175 ORTHO05D006302 1.8e-40 169.1 108 77.8
Glyma.09G261100 Glycine max HOM05D005175 ORTHO05D006302 1.8e-40 169.1 108 79.6
MELO3C011145.2 Cucumis melo HOM05D005175 ORTHO05D006302 2.3e-40 168.7 108 78.7
CsaV3_2G030910 Cucumis sativus L. HOM05D005175 ORTHO05D006302 2.3e-40 168.7 108 78.7
Gohir.A13G186200 Gossypium hirsutum HOM05D005175 ORTHO05D006302 3.9e-40 167.9 108 77.8
Rhsim02G0179100 Rhododendron simsii HOM05D005175 ORTHO05D006302 3.9e-40 167.9 108 78.7
Sabra18G0043700 Salix brachista HOM05D005175 ORTHO05D006302 3.9e-40 167.9 108 77.8
Gohir.D13G193000 Gossypium hirsutum HOM05D005175 ORTHO05D006302 5.1e-40 167.5 108 76.9
Gorai.013G218900 Gossypium raimondii HOM05D005175 ORTHO05D006302 5.1e-40 167.5 108 76.9
Sc09g0009230 Simmondsia chinensis HOM05D005175 ORTHO05D006302 6.7e-40 167.2 108 77.8
ClCG08G012270 Citrullus lanatus HOM05D005175 ORTHO05D006302 8.7e-40 166.8 108 77.8
Duzib150G1530 Durio zibethinus HOM05D005175 ORTHO05D006302 8.7e-40 166.8 108 78.7
CARHR154650 Cardamine hirsuta HOM05D005175 ORTHO05D006302 1.5e-39 166.0 108 77.8
Cfa013314 Carpinus fangiana HOM05D005175 ORTHO05D006302 1.5e-39 166.0 108 78.7
FAN20G1449 Fragaria x ananassa HOM05D005175 ORTHO05D006302 1.5e-39 166.0 108 78.7
Thhalv10002689m.g Eutrema salsugineum HOM05D005175 ORTHO05D006302 1.9e-39 165.6 108 76.9
Thhalv10002814m.g Eutrema salsugineum HOM05D005175 ORTHO05D006302 1.9e-39 165.6 108 76.9
MD01G1039900 Malus domestica HOM05D005175 ORTHO05D006302 1.9e-39 165.6 108 77.8
Sp5g15420 Schrenkiella parvula HOM05D005175 ORTHO05D006302 1.9e-39 165.6 108 76.9
EL10Ac2g04031 Beta vulgaris HOM05D005175 ORTHO05D006302 2.5e-39 165.2 108 74.1
Manes.01G107300 Manihot esculenta HOM05D005175 ORTHO05D006302 2.5e-39 165.2 108 81.5
Hma1.2p1_0774F.1_g216370 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 3.3e-39 164.9 107 78.5
Carub.0005s1205 Capsella rubella HOM05D005175 ORTHO05D006302 4.3e-39 164.5 108 76.9
CiPaw.11G052500 Carya illinoinensis HOM05D005175 ORTHO05D006302 4.3e-39 164.5 108 77.8
Glyma.18G230900 Glycine max HOM05D005175 ORTHO05D006302 4.3e-39 164.5 108 76.9
TAR626G1708 Trochodendron aralioides HOM05D005175 ORTHO05D006302 4.3e-39 164.5 108 76.9
TAR636G0460 Trochodendron aralioides HOM05D005175 ORTHO05D006302 4.3e-39 164.5 108 76.9
AL5G25000 Arabidopsis lyrata HOM05D005175 ORTHO05D006302 5.7e-39 164.1 108 76.9
BcaC01g01925 Brassica carinata HOM05D005175 ORTHO05D006302 5.7e-39 164.1 108 75.9
BolC3t19335H Brassica oleracea HOM05D005175 ORTHO05D006302 5.7e-39 164.1 108 75.9
Hma1.2p1_0049F.1_g028670 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 5.7e-39 164.1 108 77.8
Hma1.2p1_0049F.1_g028680 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 5.7e-39 164.1 108 77.8
Potri.018G043600 Populus trichocarpa HOM05D005175 ORTHO05D006302 5.7e-39 164.1 108 75.9
RcHm_v2.0_Chr6g0306141 Rosa chinensis HOM05D005175 ORTHO05D006302 5.7e-39 164.1 108 77.8
Thecc.09G044300 Theobroma cacao HOM05D005175 ORTHO05D006302 5.7e-39 164.1 108 76.9
CSS0003070 Camellia sinensis var. sinensis HOM05D005175 ORTHO05D006302 7.4e-39 163.7 108 75.0
Lj8C577G3 Lonicera japonica HOM05D005175 ORTHO05D006302 7.4e-39 163.7 108 76.9
Lj8C586G3 Lonicera japonica HOM05D005175 ORTHO05D006302 7.4e-39 163.7 108 76.9
PGR044G2490 Punica granatum HOM05D005175 ORTHO05D006302 7.4e-39 163.7 111 78.4
AT3G46210 Arabidopsis thaliana HOM05D005175 ORTHO05D006302 9.6e-39 163.3 108 76.9
CSS0010535 Camellia sinensis var. sinensis HOM05D005175 ORTHO05D006302 9.6e-39 163.3 108 74.1
FvH4_2g35660 Fragaria vesca HOM05D005175 ORTHO05D006302 1.3e-38 162.9 108 76.9
THA.LOC104814772 Tarenaya hassleriana HOM05D005175 ORTHO05D006302 1.3e-38 162.9 108 74.1
BraA06t25187Z Brassica rapa HOM05D005175 ORTHO05D006302 2.1e-38 162.2 108 75.0
Prupe.1G449000 Prunus persica HOM05D005175 ORTHO05D006302 2.8e-38 161.8 108 75.9
MBI04_g27064_MAGBIO Magnolia biondii HOM05D005175 ORTHO05D006302 4.8e-38 161.0 108 75.0
Phvul.008G066200 Phaseolus vulgaris HOM05D005175 ORTHO05D006302 4.8e-38 161.0 108 73.1
DCAR_004475 Daucus carota HOM05D005175 ORTHO05D006302 6.3e-38 160.6 108 74.1
Duzib168G0626 Durio zibethinus HOM05D005175 ORTHO05D006302 6.3e-38 160.6 108 75.9
Lalb_Chr08g0233831 Lupinus albus HOM05D005175 ORTHO05D006302 6.3e-38 160.6 106 76.4
CANSAT11G2394 Cannabis sativa HOM05D005175 ORTHO05D006302 8.2e-38 160.2 108 75.0
vmacro11061 Vaccinium macrocarpon HOM05D005175 ORTHO05D006302 8.2e-38 160.2 108 75.9
Lj2g0027256 Lotus japonicus HOM05D005175 ORTHO05D006302 1.1e-37 159.8 108 75.0
MD15G1311800 Malus domestica HOM05D005175 ORTHO05D006302 1.1e-37 159.8 108 75.0
A06p20990 Brassica napus HOM05D005175 ORTHO05D006302 1.4e-37 159.5 107 74.8
GSVIVG01035631001 Vitis vinifera HOM05D005175 ORTHO05D006302 1.8e-37 159.1 108 75.9
Nn7g37002 Nelumbo nucifera HOM05D005175 ORTHO05D006302 3.1e-37 158.3 108 74.1
QL12p029089 Quercus lobata HOM05D005175 ORTHO05D006302 3.1e-37 158.3 108 75.0
Ah.15g099330 Amaranthus hybridus HOM05D005175 ORTHO05D006302 5.3e-37 157.5 108 73.1
CDE02G3559 Ceratophyllum demersum HOM05D005175 ORTHO05D006302 5.3e-37 157.5 108 72.2
Cc08_g09460 Coffea canephora HOM05D005175 ORTHO05D006302 5.3e-37 157.5 108 74.1
Lj1g0020257 Lotus japonicus HOM05D005175 ORTHO05D006302 5.3e-37 157.5 108 74.1
FAN15G2140 Fragaria x ananassa HOM05D005175 ORTHO05D006302 1.2e-36 156.4 108 75.9
Lsat_1_v5_gn_1_47181 Lactuca sativa HOM05D005175 ORTHO05D006302 1.2e-36 156.4 108 68.5
Medtr7g076910 Medicago truncatula HOM05D005175 ORTHO05D006302 1.2e-36 156.4 108 71.3
PSO566G0264 Papaver somniferum HOM05D005175 ORTHO05D006302 1.2e-36 156.4 108 74.1
Peaxi162Scf00227g00213 Petunia axillaris HOM05D005175 ORTHO05D006302 1.2e-36 156.4 106 73.6
Hma1.2p1_0774F.1_g216280 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 1.5e-36 156.0 108 74.1
Solyc08g066700.3 Solanum lycopersicum HOM05D005175 ORTHO05D006302 2.0e-36 155.6 108 71.3
PGSC0003DMG400004310 Solanum tuberosum HOM05D005175 ORTHO05D006302 2.0e-36 155.6 108 70.4
Nitab4.5_0007810g0010 Nicotiana tabacum HOM05D005175 ORTHO05D006302 3.4e-36 154.8 108 71.3
PSO782G3154 Papaver somniferum HOM05D005175 ORTHO05D006302 3.4e-36 154.8 108 73.1
HanXRQChr01g0029811 Helianthus annuus HOM05D005175 ORTHO05D006302 5.9e-36 154.1 108 67.6
Ca_07899_v3 Cicer arietinum L. HOM05D005175 ORTHO05D006302 1.0e-35 153.3 108 70.4
Sopen08g020660 Solanum pennellii HOM05D005175 ORTHO05D006302 1.0e-35 153.3 108 70.4
Nitab4.5_0007838g0040 Nicotiana tabacum HOM05D005175 ORTHO05D006302 1.3e-35 152.9 108 70.4
TPR.G26940 Trifolium pratense HOM05D005175 ORTHO05D006302 1.3e-35 152.9 108 67.6
Os03g0854200 Oryza sativa ssp. japonica HOM05D005175 ORTHO05D006302 1.7e-35 152.5 108 72.2
CAN.G1674.2 Capsicum annuum HOM05D005175 ORTHO05D006302 2.2e-35 152.1 108 69.4
Zm00001eb210560 Zea mays HOM05D005175 ORTHO05D006302 2.2e-35 152.1 104 72.1
C03p70530 Brassica napus HOM05D005175 ORTHO05D006302 6.5e-35 150.6 132 62.1
Psat3g109920 Pisum sativum HOM05D005175 ORTHO05D006302 6.5e-35 150.6 111 69.4
Psat3g124840 Pisum sativum HOM05D005175 ORTHO05D006302 6.5e-35 150.6 111 69.4
TWI32G0813 Tripterygium wilfordii HOM05D005175 ORTHO05D006302 4.2e-34 147.9 107 69.2
MSTRG.11700 Avicennia marina HOM05D005175 ORTHO05D006302 5.5e-34 147.5 108 66.7
Aqoxy7G01494 Aquilegia oxysepala HOM05D005175 ORTHO05D006302 4.6e-33 144.4 108 66.7
ECA248G2598 Erigeron canadensis HOM05D005175 ORTHO05D006302 4.6e-33 144.4 108 65.7
RcHm_v2.0_Chr6g0305271 Rosa chinensis HOM05D005175 ORTHO05D006302 7.9e-33 143.7 100 76.0
Aqoxy5G03197 Aquilegia oxysepala HOM05D005175 ORTHO05D006302 8.7e-32 140.2 108 64.8
HPP92_018407 Vanilla planifolia HOM05D005175 ORTHO05D006302 1.1e-31 139.8 105 67.6
Migut.A00211 Erythranthe guttata HOM05D005175 ORTHO05D006302 3.3e-31 138.3 108 63.9
AL1G56380 Arabidopsis lyrata HOM05D005175 ORTHO05D006302 7.2e-26 120.6 84 72.6
Dinv27896 Davidia involucrata HOM05D005175 ORTHO05D006302 5.1e-24 114.4 76 77.6
Zm00001eb265700 Zea mays HOM05D003504 ORTHO05D004006 5.7e-23 110.9 132 46.2
AUR62009295 Chenopodium quinoa HOM05D005175 ORTHO05D006302 9.7e-23 110.2 97 57.7
Zm00001eb292470 Zea mays HOM05D001423 ORTHO05D000709 2.8e-22 108.6 131 45.0
AUR62043392 Chenopodium quinoa HOM05D005175 ORTHO05D006302 4.8e-22 107.8 83 67.5
COL.COLO4_17864 Corchorus olitorius HOM05D005175 ORTHO05D006302 4.8e-22 107.8 74 73.0
Hund19520 Selenicereus undatus HOM05D005175 ORTHO05D006302 8.2e-22 107.1 73 75.3
SEGI_05611 Sequoiadendron giganteum HOM05D005175 ORTHO05D006302 1.1e-21 106.7 108 53.7
FAN27G1436 Fragaria x ananassa HOM05D005175 ORTHO05D006302 2.4e-21 105.5 75 70.7
Hma1.2p1_0184F.1_g081320 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 5.3e-21 104.4 75 69.3
Psat0s4355g0080 Pisum sativum HOM05D005175 ORTHO05D006302 2.6e-20 102.1 73 67.1
Pp3c4_10290 Physcomitrium patens HOM05D005175 ORTHO05D006302 4.5e-20 101.3 105 49.5
Mapoly0050s0095 Marchantia polymorpha HOM05D005175 ORTHO05D006302 1.7e-19 99.4 104 50.0
ATR0705G208 Amborella trichopoda HOM05D005175 ORTHO05D006302 7.2e-18 94.0 73 71.2
AUR62041709 Chenopodium quinoa HOM05D005175 ORTHO05D006302 9.4e-18 93.6 83 62.7
Gorai.010G107600 Gossypium raimondii HOM05D005175 ORTHO05D006302 1.6e-17 92.8 121 47.1
AagrBONN_evm.TU.Sc2ySwM_369.362 Anthoceros agrestis HOM05D005175 ORTHO05D006302 2.1e-17 92.4 104 46.2
AagrBONN_evm.TU.Sc2ySwM_228.4701 Anthoceros agrestis HOM05D005175 ORTHO05D006302 7.9e-17 90.5 104 45.2
CBR_g16978 Chara braunii HOM05D005175 ORTHO05D006302 5.3e-13 77.8 107 41.1
Zm00001eb389000 Zea mays HOM05D001423 ORTHO05D004006 1.2e-12 76.6 69 55.1
Zm00001eb340110 Zea mays HOM05D005175 ORTHO05D006302 1.3e-11 73.2 94 43.6
Gohir.A06G093501 Gossypium hirsutum HOM05D005175 ORTHO05D006302 4.2e-10 68.2 121 38.8
Cre14.g624500 Chlamydomonas reinhardtii HOM05D005175 ORTHO05D006302 7.2e-10 67.4 104 35.6
AT2G07110 Arabidopsis thaliana HOM05D005175 ORTHO05D038629 2.7e-09 65.5 107 43.9
AL6G48610 Arabidopsis lyrata HOM05D005175 ORTHO05D038629 6.1e-09 64.3 93 45.2
Gohir.D06G093150 Gossypium hirsutum HOM05D005175 ORTHO05D006302 6.1e-09 64.3 35 88.6
Haze_21802 Corylus avellana HOM05D005175 ORTHO05D006302 1.4e-08 63.2 34 88.2
Gohir.1Z049557 Gossypium hirsutum HOM05D005175 ORTHO05D006302 3.3e-07 58.5 32 87.5
Glyma.17G169500 Glycine max HOM05D005175 ORTHO05D006302 1.3e-06 56.6 32 87.5


User provided reference genes

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