Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1895.6 954 100.0
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1703.7 987 88.3
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1686.4 957 88.6
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1684.8 915 91.0
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1643.6 960 85.7
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1643.2 959 86.3
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1637.1 963 84.7
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1637.1 959 85.4
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1636.7 962 85.7
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1634.0 963 85.2
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1632.5 958 86.2
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1632.1 914 87.4
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1630.9 961 85.2
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1630.2 959 85.5
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1629.4 961 85.8
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1628.2 954 84.5
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1626.7 961 85.0
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1626.3 957 85.3
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1625.9 966 85.3
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1624.4 960 85.3
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1623.2 916 87.0
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1621.3 964 85.4
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1620.9 959 85.1
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1620.5 959 84.8
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1617.8 958 84.0
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1610.9 962 84.3
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1610.5 960 84.4
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1609.7 962 84.4
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1607.4 958 83.3
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1605.5 961 84.4
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1604.7 963 84.5
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1602.8 962 84.1
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1602.8 958 84.8
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1602.0 959 83.4
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1600.5 959 84.2
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1599.3 958 84.4
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1599.3 957 83.4
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1599.3 958 85.0
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1596.3 955 84.5
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1596.3 961 83.6
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1595.9 961 82.7
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1595.5 961 83.6
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1595.1 915 85.0
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1593.6 967 83.2
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1592.4 970 83.2
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1591.6 958 83.5
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1591.2 963 83.9
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1589.7 963 83.6
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1589.3 959 83.6
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1584.7 955 83.6
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1582.8 954 83.1
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1581.2 958 81.5
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1569.7 964 83.0
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1568.9 967 82.7
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1568.5 962 81.4
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1566.6 960 82.4
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1565.8 961 81.5
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1562.4 957 81.1
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1560.4 953 81.8
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1556.2 968 82.1
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1555.8 962 82.6
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1555.8 976 79.7
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1553.1 958 81.0
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1552.7 955 82.2
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1550.0 954 80.4
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1548.1 954 80.3
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1530.4 960 80.7
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1528.8 963 80.6
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1527.7 970 80.3
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1522.7 1183 68.6
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1522.3 915 80.2
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1521.1 962 79.3
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1521.1 985 78.4
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1518.8 959 79.4
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1518.1 979 77.2
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1518.1 961 79.6
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1507.3 920 81.1
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1503.8 967 78.8
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1501.5 923 77.9
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1497.6 923 80.4
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1489.6 971 77.0
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1486.5 959 78.8
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1485.7 957 78.7
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1483.8 966 78.4
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1478.0 967 77.8
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1476.8 984 76.6
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1476.1 966 78.0
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1474.1 987 76.3
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1474.1 987 76.3
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1474.1 969 77.3
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1468.0 831 85.4
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1467.2 962 76.7
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1466.8 959 78.1
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1466.1 973 76.0
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1459.5 977 76.3
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1457.2 981 75.9
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1455.3 963 75.3
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1451.8 905 80.3
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1451.0 843 82.8
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1445.3 957 74.4
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1442.9 970 76.9
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1421.0 966 71.9
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1415.6 956 73.0
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1411.0 953 74.8
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1399.0 953 72.0
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1385.5 921 74.7
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1364.7 912 71.9
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1363.6 923 73.6
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1348.6 784 84.9
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1342.0 961 70.4
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1315.8 786 81.6
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1275.0 726 84.8
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1255.7 923 66.7
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1220.7 779 74.2
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1204.1 944 64.7
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1200.7 690 85.8
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 0.0e+00 1159.8 952 63.7
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1156.7 988 60.4
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1140.2 982 58.8
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1131.3 962 60.0
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 0.0e+00 1123.2 722 79.9
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 7.4e-298 1027.3 655 78.5
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 6.7e-291 1004.2 787 61.6
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 4.5e-287 991.5 673 76.5
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 9.7e-274 947.2 585 80.7
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 9.7e-266 920.6 526 88.0
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.4e-264 916.0 562 80.4
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 5.9e-255 884.8 601 77.0
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 7.0e-232 808.1 501 80.0
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 7.8e-223 778.1 441 89.6
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 7.4e-189 665.2 386 83.4
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 5.8e-186 655.6 403 82.4
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 1.4e-179 634.4 1038 38.0
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 2.5e-152 543.9 415 65.1
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 3.0e-150 537.0 415 63.6
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 6.8e-142 509.2 824 37.5
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 1.2e-130 471.9 480 56.5
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 3.3e-120 437.2 253 81.8
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 4.9e-116 423.3 223 88.3
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 2.8e-111 407.5 1052 28.3
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 7.6e-109 399.4 854 33.8
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 8.6e-105 386.0 279 68.5
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 5.8e-101 373.2 251 74.1
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 4.4e-93 347.1 253 66.8
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 4.4e-93 347.1 253 66.8
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 1.2e-90 339.0 365 46.3
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 1.9e-88 331.6 296 60.8
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 4.1e-62 244.2 148 75.7
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.3e-55 222.6 242 55.0
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.2e-53 216.1 174 54.0
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 3.9e-49 201.1 149 63.1
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 3.9e-49 201.1 149 63.1
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 7.0e-46 190.3 139 64.0
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 6.5e-44 183.7 170 55.3
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 3.2e-43 181.4 103 83.5
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.0e-41 176.4 118 69.5
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 1.1e-40 172.9 141 54.6
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 7.5e-40 170.2 99 80.8
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 1.2e-37 162.9 131 66.4
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 5.0e-36 157.5 111 70.3
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.7e-34 151.0 76 88.2
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.4e-33 149.4 76 86.8
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.8e-33 149.1 75 89.3
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.0e-33 148.3 76 86.8
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 6.8e-33 147.1 120 63.3
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 3.4e-32 144.8 88 79.5
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.7e-32 144.1 73 89.0
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.3e-31 142.9 78 82.1
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 3.7e-31 141.4 143 53.1
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 5.4e-30 137.5 122 57.4
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 2.7e-29 135.2 620 22.9
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 5.5e-27 127.5 78 76.9
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.6e-26 125.9 65 90.8
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 6.1e-26 124.0 112 53.6
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.3e-23 116.3 143 50.3
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 8.3e-23 113.6 128 49.2
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 3.4e-16 91.7 82 57.3
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 2.4e-14 85.5 133 48.9
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 2.0e-13 82.4 56 69.6
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 9.5e-11 73.6 46 65.2
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 3.4e-08 65.1 42 69.0
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 5.8e-08 64.3 48 58.3
HanXRQChr15g0465621 Helianthus annuus HOM05D003791 ORTHO05D019539 1.1e-06 60.1 78 43.6


User provided reference genes

Program Settings