Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 4.6e-250 867.5 444 100.0
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 1.5e-205 719.5 445 82.9
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 3.4e-197 691.8 457 80.1
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 6.5e-188 661.0 456 75.7
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 1.9e-187 659.4 452 75.2
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 1.1e-184 650.2 449 76.2
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 7.4e-184 647.5 454 74.0
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 1.4e-182 643.3 454 72.9
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.4e-182 643.3 454 73.3
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 1.4e-182 643.3 430 75.6
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 6.5e-180 634.4 450 72.0
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 1.4e-179 633.3 455 71.6
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 1.9e-179 632.9 434 76.0
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 3.2e-179 632.1 450 72.0
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 9.4e-179 630.6 454 71.6
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 1.2e-178 630.2 450 72.0
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 6.1e-178 627.9 446 72.0
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 1.4e-177 626.7 443 72.9
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 1.8e-177 626.3 442 71.7
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.0e-177 625.5 454 72.5
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.0e-177 625.5 448 71.7
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 3.9e-177 625.2 454 72.2
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 5.1e-177 624.8 468 69.2
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 5.1e-177 624.8 468 69.2
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 1.3e-175 620.2 444 70.7
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.7e-175 619.8 450 71.1
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.2e-175 619.4 463 70.6
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.2e-175 619.4 450 71.8
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 2.2e-175 619.4 445 72.8
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 3.7e-175 618.6 450 71.1
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 6.3e-175 617.8 450 72.2
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 9.1e-174 614.0 442 71.3
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 1.2e-173 613.6 442 70.1
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 3.5e-173 612.1 448 70.5
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 2.9e-172 609.0 444 71.2
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 2.9e-172 609.0 452 70.6
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 8.5e-172 607.4 448 70.3
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 8.5e-172 607.4 448 70.3
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 3.9e-169 598.6 456 70.0
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 5.7e-168 594.7 436 70.2
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 7.4e-168 594.3 452 68.4
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 7.4e-168 594.3 449 68.4
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 8.2e-167 590.9 435 70.1
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 1.4e-166 590.1 443 68.4
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 5.3e-166 588.2 455 67.7
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 7.0e-166 587.8 451 66.7
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 1.2e-165 587.0 452 68.1
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 2.6e-165 585.9 461 68.1
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 3.5e-165 585.5 432 70.6
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 2.9e-164 582.4 432 69.7
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 4.2e-163 578.6 451 66.5
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 8.0e-162 574.3 448 66.3
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 1.4e-161 573.5 447 66.7
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 6.7e-161 571.2 458 67.2
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 5.7e-160 568.2 442 66.3
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 9.7e-160 567.4 456 65.4
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.3e-159 567.0 451 67.2
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 2.8e-159 565.8 437 66.6
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 3.7e-159 565.5 444 66.7
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 1.1e-158 563.9 459 65.1
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 1.4e-158 563.5 442 65.2
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 1.4e-158 563.5 442 66.5
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 1.8e-158 563.1 435 66.2
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 2.4e-158 562.8 444 64.4
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 3.1e-158 562.4 439 66.5
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 5.9e-157 558.1 442 65.4
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 2.9e-156 555.8 448 67.4
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 5.0e-156 555.1 439 65.8
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 6.5e-156 554.7 456 66.0
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 4.7e-154 548.5 407 70.8
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 2.3e-153 546.2 448 64.1
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 6.8e-153 544.7 439 64.2
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 2.8e-151 539.3 446 64.3
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 3.7e-151 538.9 437 64.3
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 1.8e-150 536.6 433 64.9
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 3.1e-150 535.8 507 60.2
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 2.7e-149 532.7 433 64.7
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 2.3e-148 529.6 455 62.2
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 1.6e-146 523.5 453 61.4
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 2.1e-146 523.1 539 55.7
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 1.8e-145 520.0 457 63.2
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 6.8e-145 518.1 446 61.4
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 9.8e-144 514.2 453 61.4
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 1.7e-143 513.5 473 60.3
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 1.1e-142 510.8 437 63.4
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 1.2e-141 507.3 461 60.3
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 3.5e-141 505.8 432 63.0
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 2.3e-140 503.1 404 66.3
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 7.3e-139 498.0 424 62.5
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 1.6e-138 496.9 450 60.2
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 4.0e-137 492.3 424 61.3
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 2.6e-136 489.6 440 59.3
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 2.9e-135 486.1 416 64.7
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 6.6e-132 474.9 459 57.7
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 3.3e-131 472.6 352 68.2
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 5.6e-131 471.9 270 84.1
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 4.1e-126 455.7 456 57.0
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 1.1e-121 441.0 448 56.0
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 2.3e-121 439.9 268 80.6
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 8.3e-119 431.4 253 83.0
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 1.2e-117 427.6 338 66.6
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 4.6e-117 425.6 361 63.4
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 1.3e-116 424.1 253 81.8
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 2.1e-114 416.8 437 51.7
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 1.5e-112 410.6 431 53.8
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.6e-106 390.6 228 82.5
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 2.1e-106 390.2 426 54.2
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 9.0e-105 384.8 417 51.1
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 3.3e-99 366.3 419 52.5
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 2.9e-95 353.2 489 44.2
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 6.4e-95 352.1 304 64.1
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 5.4e-94 349.0 361 55.1
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 2.3e-92 343.6 280 65.4
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 8.1e-90 335.1 334 58.7
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 4.2e-78 296.2 326 56.4
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 3.1e-73 280.0 250 59.6
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 5.1e-68 262.7 296 54.1
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 5.1e-68 262.7 287 53.0
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 2.6e-64 250.4 247 56.7
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 3.8e-63 246.5 210 63.8
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 4.8e-58 229.6 396 40.9
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 3.6e-53 213.4 437 33.6
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 4.7e-53 213.0 216 55.1
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 6.3e-50 202.6 204 55.4
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 2.4e-49 200.7 285 42.8
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 1.7e-47 194.5 253 43.9
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 6.5e-47 192.6 136 64.0
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 8.8e-44 182.2 106 85.8
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 2.4e-41 174.1 86 93.0
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 4.1e-41 173.3 98 86.7
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 2.7e-40 170.6 169 54.4
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 4.1e-33 146.7 91 72.5
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 7.7e-32 142.5 74 86.5
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 3.3e-30 137.1 87 70.1
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 3.3e-30 137.1 86 77.9
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 1.5e-27 128.3 259 31.7
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 6.2e-21 106.3 188 39.9
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 6.2e-21 106.3 67 74.6
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 4.4e-19 100.1 69 75.4
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 2.0e-16 91.3 90 55.6
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 3.9e-15 87.0 188 35.6
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 1.5e-14 85.1 84 58.3
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 2.5e-14 84.3 61 63.9
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.6e-13 81.6 59 67.8
BcaB01g02418 Brassica carinata HOM05D005149 ORTHO05D006251 1.3e-07 62.0 91 42.9
TWI15G0704 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.1e-06 58.9 44 61.4
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 1.9e-06 58.2 36 75.0
Gorai.004G275700 Gossypium raimondii HOM05D005149 ORTHO05D006251 4.3e-06 57.0 64 50.0


User provided reference genes

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