Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 1.6e-178 630.9 959 100.0
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 7.1e-115 419.5 343 68.5
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 9.0e-94 349.4 340 63.2
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 2.6e-93 347.8 349 58.2
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 4.5e-93 347.1 356 59.3
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 2.9e-92 344.4 352 65.1
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 1.6e-90 338.6 262 66.8
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 1.8e-89 335.1 295 65.4
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 6.7e-89 333.2 357 59.4
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 1.3e-87 328.9 256 68.0
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 1.6e-87 328.6 337 59.1
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 2.1e-87 328.2 357 58.5
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 2.1e-87 328.2 348 60.9
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 2.1e-87 328.2 352 57.4
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 3.7e-87 327.4 357 59.4
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 3.7e-87 327.4 241 73.9
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 3.7e-87 327.4 338 55.9
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 1.8e-86 325.1 199 77.9
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 4.1e-86 323.9 341 58.1
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 6.9e-86 323.2 247 71.3
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 2.0e-85 321.6 259 67.6
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 2.0e-85 321.6 241 70.5
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 3.4e-85 320.9 328 58.8
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 4.5e-85 320.5 268 68.7
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 5.9e-85 320.1 350 54.0
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 1.3e-84 318.9 266 66.2
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 3.8e-84 317.4 355 56.3
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 5.0e-84 317.0 333 59.8
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 5.0e-84 317.0 263 70.3
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 8.5e-84 316.2 233 73.8
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 8.5e-84 316.2 258 66.7
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.5e-83 314.7 333 59.5
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 3.2e-83 314.3 255 67.1
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 4.2e-83 313.9 242 65.7
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 1.2e-82 312.4 354 58.8
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 1.6e-82 312.0 331 57.4
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 2.1e-82 311.6 259 68.7
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 2.1e-82 311.6 259 68.7
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 2.1e-82 311.6 259 68.7
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 2.7e-82 311.2 366 54.1
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 2.7e-82 311.2 354 59.0
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 6.1e-82 310.1 248 66.9
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 6.1e-82 310.1 350 56.0
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 7.9e-82 309.7 252 66.3
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 7.9e-82 309.7 260 69.6
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 1.0e-81 309.3 369 51.8
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 3.0e-81 307.8 246 65.0
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 3.9e-81 307.4 255 69.0
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 8.7e-81 306.2 246 65.9
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 8.7e-81 306.2 257 68.1
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 1.5e-80 305.4 255 68.6
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.5e-80 305.4 261 69.7
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 2.5e-80 304.7 189 77.2
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 2.5e-80 304.7 243 70.4
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 3.3e-80 304.3 348 58.3
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 4.3e-80 303.9 357 52.7
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 5.7e-80 303.5 256 64.5
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 5.7e-80 303.5 256 64.5
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 1.3e-79 302.4 340 55.3
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 2.8e-79 301.2 347 53.9
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 2.8e-79 301.2 256 64.5
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 2.8e-79 301.2 344 54.9
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 3.7e-79 300.8 342 57.9
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 8.2e-79 299.7 341 55.1
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 1.1e-78 299.3 240 71.7
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 1.4e-78 298.9 318 56.9
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 5.3e-78 297.0 248 63.3
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 1.5e-77 295.4 338 54.1
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 5.9e-77 293.5 252 62.3
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 8.5e-76 289.7 315 56.5
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 5.5e-75 287.0 340 53.2
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 7.2e-75 286.6 252 56.7
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 4.6e-74 283.9 247 66.8
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 6.1e-74 283.5 240 65.8
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 3.9e-73 280.8 368 49.7
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 3.9e-73 280.8 259 61.8
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 3.3e-72 277.7 355 52.1
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 5.7e-72 276.9 373 48.8
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 9.7e-72 276.2 358 53.1
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 1.7e-71 275.4 255 61.6
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 2.8e-71 274.6 366 47.8
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 2.8e-71 274.6 354 51.4
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 8.2e-71 273.1 249 59.0
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 5.3e-70 270.4 369 48.5
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 2.0e-69 268.5 237 62.9
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 1.0e-68 266.2 357 52.1
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 3.8e-68 264.2 349 52.1
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 5.0e-68 263.8 245 55.9
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 6.5e-68 263.5 244 62.7
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.9e-67 261.9 244 63.5
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 1.8e-65 255.4 244 62.7
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 6.3e-63 246.9 353 50.4
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 4.2e-59 234.2 189 59.8
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 1.2e-58 232.6 189 60.3
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 8.0e-58 229.9 191 60.2
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 8.0e-58 229.9 141 79.4
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 1.0e-57 229.6 143 77.6
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 4.0e-57 227.6 188 61.7
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 4.5e-53 214.2 167 62.3
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 2.0e-48 198.7 124 78.2
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 8.3e-47 193.4 190 61.6
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 2.3e-44 185.3 206 45.6
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 9.5e-43 179.9 185 45.9
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 9.5e-43 179.9 125 71.2
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 6.1e-42 177.2 188 47.3
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 2.3e-36 158.7 131 71.8
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 9.5e-35 153.3 184 44.6
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 3.6e-34 151.4 184 44.6
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 1.3e-31 142.9 96 72.9
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 1.7e-31 142.5 83 80.7
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 4.9e-31 141.0 108 66.7
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 3.2e-30 138.3 114 62.3
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 1.2e-29 136.3 184 37.5
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.0e-29 135.6 107 64.5
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 5.9e-29 134.0 79 77.2
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 7.8e-29 133.7 107 63.6
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.7e-28 132.5 107 62.6
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 2.3e-28 132.1 91 68.1
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 8.6e-28 130.2 97 67.0
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 8.6e-28 130.2 206 38.3
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 8.6e-28 130.2 191 42.9
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 5.6e-27 127.5 103 60.2
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 3.6e-26 124.8 119 58.8
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 6.2e-26 124.0 98 63.3
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 1.4e-25 122.9 81 67.9
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 2.3e-25 122.1 78 73.1
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 4.0e-25 121.3 107 58.9
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 4.9e-23 114.4 78 64.1
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 1.9e-19 102.4 70 71.4
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 5.8e-16 90.9 58 69.0
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 3.2e-14 85.1 48 75.0
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 2.3e-12 79.0 40 92.5
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 3.0e-12 78.6 70 54.3
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 1.1e-11 76.6 162 29.0
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.9e-11 75.9 78 52.6
Potri.006G202000 Populus trichocarpa HOM05D000142 ORTHO05D007638 2.0e-08 65.9 128 34.4
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 9.9e-08 63.5 40 75.0
Peaxi162Scf00582g00611 Petunia axillaris HOM05D000142 ORTHO05D007638 2.2e-07 62.4 128 32.8
ATR0680G306 Amborella trichopoda HOM05D000604 ORTHO05D004856 3.8e-07 61.6 154 29.2
Gohir.D04G092400 Gossypium hirsutum HOM05D000142 ORTHO05D007638 6.4e-07 60.8 105 38.1
Potri.016G068300 Populus trichocarpa HOM05D000142 ORTHO05D007638 8.4e-07 60.5 127 34.6
Gohir.A04G055200 Gossypium hirsutum HOM05D000142 ORTHO05D007638 1.1e-06 60.1 117 35.0
Sabra16G0069300 Salix brachista HOM05D000142 ORTHO05D007638 1.1e-06 60.1 127 36.2
BcaB02g08574 Brassica carinata HOM05D000142 ORTHO05D007638 1.4e-06 59.7 123 35.0
GSVIVG01012163001 Vitis vinifera HOM05D000604 ORTHO05D004856 1.4e-06 59.7 184 26.1
Duzib093G2001 Durio zibethinus HOM05D000142 ORTHO05D007638 1.9e-06 59.3 92 39.1
Gorai.001G063100 Gossypium raimondii HOM05D000142 ORTHO05D001253 1.9e-06 59.3 125 36.0
Lalb_Chr07g0183131 Lupinus albus HOM05D000142 ORTHO05D001253 1.9e-06 59.3 125 34.4
Glyma.05G043200 Glycine max HOM05D000142 ORTHO05D001253 2.4e-06 58.9 96 42.7
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 3.2e-06 58.5 39 69.2
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 3.2e-06 58.5 39 69.2
Thecc.05G106500 Theobroma cacao HOM05D000142 ORTHO05D007638 3.2e-06 58.5 112 35.7
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 4.1e-06 58.2 157 29.9
Ah.02g115740 Amaranthus hybridus HOM05D000142 ORTHO05D007638 7.1e-06 57.4 125 32.8
Gorai.009G394200 Gossypium raimondii HOM05D000142 ORTHO05D007638 7.1e-06 57.4 101 37.6
TPR.G37575 Trifolium pratense HOM05D000142 ORTHO05D001253 7.1e-06 57.4 101 37.6
Cpa.g.sc192.5 Carica papaya HOM05D000604 ORTHO05D004856 9.2e-06 57.0 177 26.6


User provided reference genes

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