Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 4.5e-150 534.6 288 100.0
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 4.4e-121 438.3 267 88.0
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 9.9e-121 437.2 288 83.0
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 5.4e-119 431.4 288 81.6
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.7e-118 429.1 288 80.9
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.7e-118 429.1 288 80.9
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.3e-117 426.8 286 80.8
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 3.9e-117 425.2 288 79.9
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 1.9e-116 422.9 286 80.1
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 4.3e-116 421.8 288 79.9
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 5.6e-116 421.4 288 80.6
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 1.4e-114 416.8 288 78.1
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.4e-114 416.8 288 78.5
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 1.5e-113 413.3 288 79.9
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 2.6e-113 412.5 288 77.4
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 4.4e-113 411.8 288 76.7
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 5.8e-113 411.4 289 77.5
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 8.4e-112 407.5 288 76.4
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 1.1e-111 407.1 290 77.6
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 3.2e-111 405.6 288 77.1
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 5.4e-111 404.8 288 78.1
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 2.1e-110 402.9 288 77.4
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 2.1e-110 402.9 288 75.7
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 3.5e-110 402.1 288 75.7
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 2.3e-109 399.4 288 76.0
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 3.0e-109 399.1 288 74.3
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 5.6e-108 394.8 287 74.6
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 7.3e-108 394.4 288 75.3
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 9.6e-108 394.0 288 74.0
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 3.6e-107 392.1 288 73.6
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 6.2e-107 391.3 288 74.7
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 8.1e-107 391.0 286 74.5
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 1.4e-106 390.2 289 74.7
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 5.3e-106 388.3 289 75.4
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 6.9e-106 387.9 289 74.4
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 6.9e-106 387.9 289 75.1
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 6.9e-106 387.9 288 75.7
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 9.0e-106 387.5 290 73.4
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 9.0e-106 387.5 281 75.4
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 3.4e-105 385.6 288 74.0
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.3e-104 383.6 287 74.2
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 1.7e-104 383.3 288 74.3
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 2.9e-104 382.5 288 73.3
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 6.4e-104 381.3 288 75.0
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 8.4e-104 380.9 287 73.9
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 1.4e-103 380.2 287 73.2
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 2.4e-103 379.4 316 69.3
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 2.4e-103 379.4 286 72.0
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 3.2e-103 379.0 288 72.9
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 4.2e-103 378.6 288 72.9
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 9.3e-103 377.5 289 72.7
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 9.3e-103 377.5 305 69.2
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 1.6e-102 376.7 289 72.7
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 1.6e-102 376.7 286 73.1
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 6.0e-102 374.8 289 74.0
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 1.7e-101 373.2 294 72.4
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 2.3e-101 372.9 289 72.0
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 3.9e-101 372.1 288 70.8
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 6.6e-101 371.3 288 72.2
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 8.7e-101 370.9 302 69.9
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 1.1e-100 370.5 286 70.6
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 3.3e-100 369.0 289 72.3
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 1.6e-99 366.7 308 67.2
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 1.6e-99 366.7 265 75.1
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 2.8e-99 365.9 288 73.3
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 4.8e-99 365.2 290 71.4
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 1.1e-98 364.0 288 68.1
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 1.4e-98 363.6 278 74.8
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 1.8e-98 363.2 250 76.8
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 1.8e-98 363.2 239 80.8
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 3.1e-98 362.5 249 77.1
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 5.3e-98 361.7 269 74.7
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 5.3e-98 361.7 289 70.9
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 4.5e-97 358.6 280 72.5
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 9.9e-97 357.5 286 72.4
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 6.4e-96 354.8 266 74.4
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 1.1e-95 354.0 255 74.9
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 1.4e-95 353.6 259 74.9
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 1.4e-95 353.6 259 74.9
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 4.2e-95 352.1 265 71.7
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 5.5e-95 351.7 259 73.7
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 5.5e-95 351.7 275 71.3
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 1.2e-94 350.5 249 75.1
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 1.6e-94 350.1 259 73.7
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 1.0e-93 347.4 252 74.2
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 1.3e-93 347.1 296 66.9
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 5.1e-93 345.1 265 73.6
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 5.1e-93 345.1 265 73.6
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 5.1e-93 345.1 276 70.7
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 6.7e-93 344.7 290 70.7
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 6.7e-93 344.7 288 70.1
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 1.5e-92 343.6 240 76.2
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 2.5e-92 342.8 265 72.8
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 2.5e-92 342.8 265 72.8
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 7.4e-92 341.3 259 72.6
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 9.6e-92 340.9 288 65.3
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 3.7e-91 339.0 259 72.2
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 3.1e-90 335.9 259 71.4
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 6.9e-90 334.7 259 71.0
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 4.5e-89 332.0 259 70.7
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 2.2e-88 329.7 256 70.7
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 1.1e-87 327.4 282 64.5
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 5.7e-84 315.1 260 68.1
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 1.6e-83 313.5 269 66.9
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 8.2e-83 311.2 260 69.6
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 1.2e-78 297.4 288 61.8
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 2.1e-78 296.6 211 77.7
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 6.7e-77 291.6 263 64.6
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 2.5e-76 289.7 246 66.7
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 9.7e-76 287.7 275 60.7
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 2.4e-74 283.1 280 61.4
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.9e-71 273.5 274 59.1
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 2.0e-68 263.5 281 58.0
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 2.2e-67 260.0 153 86.3
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 1.5e-65 253.8 153 83.7
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 1.0e-64 251.1 288 54.2
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 5.2e-61 238.8 231 64.1
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 4.8e-59 232.3 205 66.8
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 2.2e-56 223.4 264 50.0
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 3.8e-56 222.6 166 72.9
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 1.1e-55 221.1 186 61.8
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 4.2e-55 219.2 189 65.6
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 9.4e-55 218.0 125 90.4
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.2e-49 201.1 153 72.5
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 2.3e-45 186.8 153 64.1
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 5.2e-45 185.7 166 65.7
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.4e-42 177.6 166 62.7
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 7.0e-42 175.3 166 62.0
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 1.6e-38 164.1 289 42.6
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 8.0e-38 161.8 240 42.1
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.3e-35 154.5 105 75.2
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 1.8e-29 134.0 141 61.0
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 2.6e-28 130.2 67 92.5
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 1.3e-24 117.9 137 58.4
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 8.0e-22 108.6 73 72.6
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 7.0e-18 95.5 136 51.5
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 3.5e-17 93.2 105 58.1
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 6.8e-13 79.0 71 64.8
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 3.7e-11 73.2 42 78.6
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.9e-10 70.9 173 34.7
CBR_g3778 Chara braunii HOM05D005498 ORTHO05D006719 4.3e-07 59.7 40 72.5
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 4.3e-07 59.7 75 49.3


User provided reference genes

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