Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 2.7e-246 855.1 514 100.0
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 8.4e-240 833.6 514 97.1
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 1.5e-236 822.8 514 91.4
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 6.9e-234 813.9 514 94.0
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 4.5e-233 811.2 514 94.9
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 2.2e-232 808.9 512 93.8
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 3.8e-232 808.1 511 95.3
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 3.8e-232 808.1 510 91.4
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 1.4e-231 806.2 514 94.0
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 1.4e-231 806.2 514 90.3
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 3.2e-231 805.1 510 91.6
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 3.2e-231 805.1 514 93.6
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 7.2e-231 803.9 510 94.3
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 7.2e-231 803.9 514 89.3
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 9.4e-231 803.5 514 93.6
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 1.2e-230 803.1 511 93.5
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 1.2e-230 803.1 511 90.4
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 2.1e-230 802.4 514 93.8
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 2.1e-230 802.4 509 89.4
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 2.1e-230 802.4 510 90.4
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 3.6e-230 801.6 511 93.3
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 4.6e-230 801.2 514 94.0
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 6.1e-230 800.8 514 93.6
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 1.0e-229 800.0 513 94.0
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 3.0e-229 798.5 514 91.8
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 3.0e-229 798.5 514 93.2
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 3.9e-229 798.1 510 93.9
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 8.8e-229 797.0 513 93.0
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 4.3e-228 794.7 514 92.6
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 1.7e-227 792.7 514 93.4
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 1.7e-227 792.7 512 93.4
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 2.8e-227 792.0 512 93.2
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 3.7e-227 791.6 512 93.4
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 5.3e-226 787.7 514 91.2
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 6.9e-226 787.3 514 91.1
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 6.9e-226 787.3 504 93.3
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 9.1e-226 786.9 511 92.8
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 9.1e-226 786.9 513 92.0
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 1.5e-225 786.2 514 88.1
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 3.4e-225 785.0 514 91.6
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 3.4e-225 785.0 514 92.0
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 4.5e-225 784.6 513 90.6
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 4.5e-225 784.6 514 91.8
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 4.5e-225 784.6 512 92.2
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 1.7e-224 782.7 514 89.5
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 2.9e-224 781.9 514 92.2
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 1.1e-223 780.0 514 90.9
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.4e-223 779.6 514 85.8
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 1.9e-223 779.2 513 92.0
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 1.9e-223 779.2 514 90.5
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 7.2e-223 777.3 514 87.0
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 7.2e-223 777.3 514 87.0
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 1.2e-222 776.5 513 89.9
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 1.6e-222 776.2 514 89.3
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 2.1e-222 775.8 513 91.2
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 2.1e-222 775.8 514 89.3
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 2.1e-222 775.8 536 88.1
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 2.1e-222 775.8 513 89.9
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 3.6e-222 775.0 513 86.9
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 4.7e-222 774.6 535 84.5
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 6.1e-222 774.2 513 89.7
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 1.0e-221 773.5 512 92.4
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 1.0e-221 773.5 514 91.6
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 1.0e-221 773.5 511 86.3
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 1.8e-221 772.7 514 90.3
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 2.3e-221 772.3 514 88.7
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 4.4e-220 768.1 515 89.5
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 7.4e-220 767.3 511 88.6
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 1.7e-219 766.1 527 80.1
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 2.2e-219 765.8 511 85.3
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 8.2e-219 763.8 542 82.7
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 1.1e-218 763.5 514 91.1
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 5.3e-218 761.1 513 87.7
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 7.0e-218 760.8 504 90.7
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 7.0e-218 760.8 504 90.7
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 4.5e-217 758.1 514 89.9
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 7.7e-217 757.3 504 89.1
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 1.0e-216 756.9 514 89.5
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 1.3e-216 756.5 514 89.3
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 3.8e-216 755.0 511 86.3
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 1.9e-215 752.7 511 83.2
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 2.5e-215 752.3 514 85.6
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 1.4e-213 746.5 511 86.5
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 1.1e-212 743.4 509 86.4
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 1.1e-212 743.4 509 86.4
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 2.0e-212 742.7 500 87.0
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 2.6e-212 742.3 511 86.1
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 4.4e-212 741.5 507 88.2
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 4.5e-209 731.5 514 78.6
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 1.0e-208 730.3 514 85.0
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.1e-206 722.6 509 88.2
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 3.0e-205 718.8 535 82.2
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 4.0e-205 718.4 485 89.7
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 8.8e-205 717.2 520 83.5
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 1.2e-204 716.8 511 85.7
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 2.0e-201 706.1 514 76.1
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 1.9e-199 699.5 514 80.0
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 2.5e-199 699.1 514 81.9
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 7.2e-199 697.6 557 77.2
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 1.6e-198 696.4 525 83.4
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 2.3e-197 692.6 551 71.9
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 1.7e-195 686.4 514 80.5
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 2.2e-195 686.0 464 92.9
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 2.8e-195 685.6 484 87.2
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 4.8e-195 684.9 468 90.6
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 7.2e-191 671.0 511 72.6
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 7.0e-186 654.4 513 82.5
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 5.6e-183 644.8 430 93.7
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 2.0e-180 636.3 435 88.5
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 1.2e-177 627.1 428 90.0
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 3.0e-160 569.3 518 68.0
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 3.1e-157 559.3 414 86.7
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 4.2e-154 548.9 511 67.7
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 4.9e-139 498.8 269 91.1
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 2.5e-135 486.5 254 95.3
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 5.7e-127 458.8 322 87.0
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 3.2e-122 443.0 312 80.8
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 1.4e-112 411.0 385 60.3
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 5.9e-108 395.6 210 96.2
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 1.3e-107 394.4 210 95.7
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 3.8e-91 339.7 365 74.0
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 3.4e-79 300.1 257 81.3
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 1.3e-75 288.1 520 49.6
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 4.9e-70 269.6 176 88.1
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 3.3e-66 256.9 134 98.5
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 9.8e-63 245.4 526 35.9
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 1.1e-42 178.7 109 78.0
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 2.5e-42 177.6 99 82.8
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 8.1e-41 172.6 317 43.8
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 3.2e-37 160.6 80 93.8
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 1.1e-34 152.1 80 93.8
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 7.3e-34 149.4 107 74.8
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 3.6e-33 147.1 137 62.8
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 3.6e-33 147.1 178 52.2
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 6.4e-30 136.3 295 31.9
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 1.6e-28 131.7 70 90.0
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 1.1e-26 125.6 69 87.0
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 9.6e-26 122.5 64 87.5
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 9.6e-26 122.5 64 87.5
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 2.1e-20 104.8 56 83.9
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 4.6e-20 103.6 51 88.2
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 1.3e-17 95.5 56 73.2
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 3.7e-17 94.0 45 91.1
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 8.1e-17 92.8 74 62.2
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 8.1e-17 92.8 74 62.2
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.4e-16 91.3 47 97.9
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 6.9e-16 89.7 45 86.7
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.5e-15 88.6 127 42.5
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 7.9e-12 76.3 105 44.8
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 3.0e-11 74.3 134 72.4
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 1.5e-10 72.0 36 83.3
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 2.4e-08 64.7 61 59.0
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 1.5e-07 62.0 35 77.1
Actinidia23032 Actinidia chinensis HOM05D004842 ORTHO05D008384 2.2e-06 58.2 74 52.7
TPR.G36494 Trifolium pratense HOM05D009291 ORTHO05D010716 5.0e-06 57.0 29 82.8


User provided reference genes

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