Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 2135.1 1196 100.0
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1919.1 1197 88.1
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1827.8 1196 84.0
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1821.6 1198 83.9
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1810.4 1197 84.3
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1804.6 1198 83.9
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1800.0 1198 83.4
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1798.5 1198 83.2
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1796.2 1199 81.2
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1795.0 1196 82.4
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1794.2 1197 84.3
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1791.9 1199 82.6
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1776.1 1199 83.2
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1769.2 1196 81.4
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1762.7 1202 80.5
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1761.1 1203 83.0
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1760.7 1194 81.7
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1758.0 1201 80.3
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1758.0 1200 81.0
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1754.2 1260 78.3
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1752.6 1198 82.0
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1751.5 1206 81.0
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1749.6 1206 81.8
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1747.6 1198 80.6
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1744.9 1179 82.2
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1738.0 1202 81.5
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1738.0 1215 81.0
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1736.5 1198 79.6
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1731.8 1204 80.3
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1728.4 1206 81.2
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1726.8 1200 81.5
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1726.1 1198 79.7
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1724.9 1204 81.0
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1723.4 1250 78.0
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1716.4 1197 79.2
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1713.4 1197 80.5
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1705.3 1195 80.7
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1701.0 1199 79.4
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1699.5 1207 77.1
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1699.5 1199 78.9
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1696.0 1138 83.4
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1695.6 1200 76.2
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1695.2 1195 79.2
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1693.7 1206 77.1
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1693.3 1203 78.2
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1690.6 1209 76.4
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1690.2 1218 78.8
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1689.9 1400 72.0
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1679.5 1199 76.7
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1678.3 1212 76.2
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1676.4 1203 77.4
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1670.6 1155 78.8
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1669.4 1173 80.3
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1666.4 1219 75.6
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1652.1 1203 74.2
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1649.0 1202 77.2
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1648.3 1183 78.4
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1648.3 1228 76.4
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1642.1 1202 74.0
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1635.5 1186 76.5
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1635.2 1079 84.3
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1630.5 1201 77.9
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1629.0 1206 76.3
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1623.6 1165 77.0
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1621.3 1104 80.5
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1613.2 1197 74.8
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1607.8 1229 71.9
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1597.8 1170 76.9
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1596.3 1200 72.8
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1595.1 1199 76.6
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1594.7 1209 72.6
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1579.7 1192 73.6
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1575.8 1197 71.0
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1575.8 1197 71.0
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1575.1 1198 73.2
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1574.7 1201 70.9
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1573.1 1197 73.3
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1572.8 1177 74.6
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1568.9 1197 70.7
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1561.2 1217 72.6
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1560.8 1199 74.7
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1547.3 1303 70.1
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1543.9 1198 72.7
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1540.8 1197 70.0
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1540.4 1201 72.6
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1539.6 1203 72.5
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1538.5 1198 71.4
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1537.3 1209 72.1
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1536.9 1205 72.3
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1535.4 1210 70.0
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1531.2 1172 72.9
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1521.1 1199 74.0
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1487.2 1209 68.9
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1486.1 930 86.0
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1459.9 1192 67.9
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1444.1 1174 68.4
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1438.7 1186 71.1
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1428.7 879 83.2
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1380.5 873 84.3
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1378.2 1212 65.5
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1374.0 1260 63.3
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1358.2 1217 66.0
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1336.6 1190 64.5
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1239.6 814 82.3
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1219.5 840 77.9
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1163.7 760 82.5
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1144.4 1222 56.4
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1106.3 788 73.6
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1080.1 887 74.9
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 3.9e-296 1021.9 971 66.0
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 1.3e-280 970.3 666 76.4
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.5e-274 949.5 737 72.6
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.8e-269 933.3 924 63.2
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.2e-207 728.0 609 69.0
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 8.9e-192 675.2 532 66.4
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 7.6e-175 619.0 960 42.0
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 3.5e-172 610.1 476 71.8
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.7e-166 591.3 377 80.4
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 8.7e-155 552.4 292 92.1
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 2.4e-144 517.7 442 67.0
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 5.3e-128 463.4 364 77.5
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 7.2e-125 453.0 1157 34.1
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 1.6e-124 451.8 374 70.9
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 4.1e-120 437.2 237 89.0
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 1.9e-117 428.3 835 38.9
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 2.0e-114 418.3 313 71.9
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 1.5e-98 365.5 1031 29.1
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 4.6e-95 354.0 618 41.4
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 8.9e-91 339.7 212 79.7
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.2e-90 339.3 215 80.9
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 5.8e-90 337.0 215 80.5
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 1.3e-89 335.9 181 89.0
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 1.3e-89 335.9 181 89.0
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 6.6e-86 323.6 174 89.1
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 9.2e-80 303.1 224 69.2
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 9.9e-74 283.1 340 54.7
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 4.2e-72 277.7 376 54.8
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 2.0e-66 258.8 391 45.8
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 6.4e-65 253.8 362 58.6
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 4.8e-60 237.7 335 48.4
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 7.6e-58 230.3 130 90.0
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 6.4e-57 227.3 128 89.1
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.2e-55 223.0 164 70.1
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 6.0e-55 220.7 138 79.0
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.3e-52 213.0 154 71.4
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 4.8e-52 211.1 315 49.8
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 6.2e-52 210.7 329 42.2
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 3.2e-48 198.4 232 63.4
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 3.8e-41 174.9 120 69.2
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 3.3e-37 161.8 91 87.9
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 3.7e-36 158.3 222 46.4
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 5.0e-33 147.9 157 57.3
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.4e-32 146.4 91 79.1
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 1.9e-32 146.0 104 80.8
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 3.6e-31 141.7 119 64.7
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 4.6e-31 141.4 77 87.0
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 3.7e-28 131.7 119 69.7
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 1.8e-27 129.4 212 44.3
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 1.7e-25 122.9 87 69.0
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.4e-24 119.8 73 79.5
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 7.9e-23 114.0 80 67.5
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 1.8e-22 112.8 65 89.2
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 6.7e-22 110.9 95 71.6
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 3.3e-21 108.6 72 75.0
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 5.3e-19 101.3 112 55.4
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 2.0e-18 99.4 59 88.1
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 4.5e-18 98.2 68 67.6
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 1.7e-17 96.3 57 77.2
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 2.2e-17 95.9 56 76.8
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 2.2e-17 95.9 77 62.3
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 1.1e-16 93.6 119 49.6
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 4.8e-12 78.2 46 84.8
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 1.8e-11 76.3 56 62.5
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 2.9e-09 68.9 113 42.5
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 8.5e-09 67.4 156 38.5
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 3.2e-08 65.5 42 71.4
Hma1.2p1_3877F.1_g337870 Hydrangea macrophylla HOM05D003924 ORTHO05D228195 8.0e-07 60.8 53 60.4
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 1.0e-06 60.5 47 55.3


User provided reference genes

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