Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G108300 Carya illinoinensis HOM05D006139 ORTHO05D007681 0.0e+00 1231.1 627 100.0
QL10p044141 Quercus lobata HOM05D006139 ORTHO05D007681 1.8e-297 1025.4 662 80.1
Potri.011G107400 Populus trichocarpa HOM05D006139 ORTHO05D007681 2.7e-288 995.0 629 78.7
Hma1.2p1_0412F.1_g147150 Hydrangea macrophylla HOM05D006139 ORTHO05D007681 2.8e-285 984.9 629 77.9
Prupe.1G178000 Prunus persica HOM05D006139 ORTHO05D007681 2.6e-283 978.4 629 77.9
CSS0045945 Camellia sinensis var. sinensis HOM05D006139 ORTHO05D007681 1.9e-281 972.2 629 76.6
Sabra11G0095200 Salix brachista HOM05D006139 ORTHO05D007681 3.2e-281 971.5 637 76.9
MD13G1278700 Malus domestica HOM05D006139 ORTHO05D007681 3.5e-280 968.0 629 77.3
RcHm_v2.0_Chr4g0409801 Rosa chinensis HOM05D006139 ORTHO05D007681 2.1e-277 958.7 629 77.1
GSVIVG01031668001 Vitis vinifera HOM05D006139 ORTHO05D007681 8.9e-276 953.4 629 77.1
Manes.03G099000 Manihot esculenta HOM05D006139 ORTHO05D007681 5.8e-275 950.7 629 75.8
TWI38G2388 Tripterygium wilfordii HOM05D006139 ORTHO05D007681 3.9e-271 937.9 629 74.6
TAR365G1167 Trochodendron aralioides HOM05D006139 ORTHO05D007681 4.3e-270 934.5 610 77.4
Ciclev10019318m.g Citrus clementina HOM05D006139 ORTHO05D007681 2.8e-269 931.8 629 75.4
CsaV3_4G003770 Cucumis sativus L. HOM05D006139 ORTHO05D007681 4.7e-269 931.0 629 74.6
Eucgr.F03241 Eucalyptus grandis HOM05D006139 ORTHO05D007681 4.7e-269 931.0 629 73.6
Sc22g0003230 Simmondsia chinensis HOM05D006139 ORTHO05D007681 8.1e-269 930.2 628 74.2
Sed0017452 Sechium edule HOM05D006139 ORTHO05D007681 2.6e-267 925.2 629 74.1
Thecc.07G123700 Theobroma cacao HOM05D006139 ORTHO05D007681 3.4e-267 924.9 629 73.0
MELO3C017678.2 Cucumis melo HOM05D006139 ORTHO05D007681 1.3e-266 922.9 629 74.4
Duzib213G0841 Durio zibethinus HOM05D006139 ORTHO05D007681 3.8e-266 921.4 629 73.0
Aqoxy2G03950 Aquilegia oxysepala HOM05D006139 ORTHO05D007681 4.9e-266 921.0 630 73.8
CANSAT11G1108 Cannabis sativa HOM05D006139 ORTHO05D007681 2.4e-265 918.7 629 74.1
FvH4_4g12150 Fragaria vesca HOM05D006139 ORTHO05D007681 4.2e-265 917.9 629 74.4
FAN12G2778 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.2e-264 916.4 629 74.2
Migut.N00440 Erythranthe guttata HOM05D006139 ORTHO05D007681 3.5e-264 914.8 629 72.8
SGA_v2.0_scaffold109G31142 Striga asiatica HOM05D006139 ORTHO05D007681 1.0e-263 913.3 632 72.2
Lalb_Chr06g0164661 Lupinus albus HOM05D006139 ORTHO05D007681 5.1e-263 911.0 631 72.9
Sopen09g036170 Solanum pennellii HOM05D006139 ORTHO05D007681 3.3e-262 908.3 629 72.3
Rhsim07G0086500 Rhododendron simsii HOM05D006139 ORTHO05D007681 5.6e-262 907.5 720 65.3
Gohir.A01G052100 Gossypium hirsutum HOM05D006139 ORTHO05D007681 9.6e-262 906.7 629 72.8
Solyc09g098230.3 Solanum lycopersicum HOM05D006139 ORTHO05D007681 3.6e-261 904.8 629 72.2
Gorai.002G052100 Gossypium raimondii HOM05D006139 ORTHO05D007681 4.0e-260 901.4 629 72.3
PSO675G6876 Papaver somniferum HOM05D006139 ORTHO05D007681 9.9e-259 896.7 628 71.2
Cc03_g10570 Coffea canephora HOM05D006139 ORTHO05D007681 1.7e-258 896.0 629 71.1
arahy.Tifrunner.gnm1.ann1.46LBLY Arachis hypogaea HOM05D006139 ORTHO05D007681 2.9e-258 895.2 628 72.9
PSO017G2886 Papaver somniferum HOM05D006139 ORTHO05D007681 2.9e-258 895.2 628 70.7
MSTRG.17865 Avicennia marina HOM05D006139 ORTHO05D007681 8.4e-258 893.6 629 71.2
Glyma.20G248800 Glycine max HOM05D006139 ORTHO05D007681 8.4e-258 893.6 636 73.7
Lsat_1_v5_gn_3_24941 Lactuca sativa HOM05D006139 ORTHO05D007681 3.2e-257 891.7 629 71.2
ECA246G3778 Erigeron canadensis HOM05D006139 ORTHO05D007681 3.0e-255 885.2 630 71.3
Nn3g20967 Nelumbo nucifera HOM05D006139 ORTHO05D007681 3.1e-252 875.2 609 71.1
Lj5g0023092 Lotus japonicus HOM05D006139 ORTHO05D007681 5.8e-251 870.9 628 71.7
Medtr1g116980 Medicago truncatula HOM05D006139 ORTHO05D007681 1.6e-248 862.8 627 70.0
PGR031G2404 Punica granatum HOM05D006139 ORTHO05D007681 7.9e-248 860.5 630 68.6
Psat6g243280 Pisum sativum HOM05D006139 ORTHO05D007681 3.0e-247 858.6 630 69.2
VMungo0720G1636 Vigna mungo HOM05D006139 ORTHO05D007681 4.8e-245 851.3 631 69.9
Phvul.007G001600 Phaseolus vulgaris HOM05D006139 ORTHO05D007681 6.9e-244 847.4 630 70.8
Gohir.D01G041500 Gossypium hirsutum HOM05D006139 ORTHO05D007681 1.7e-242 842.8 590 72.2
Sp1g15110 Schrenkiella parvula HOM05D006139 ORTHO05D007681 3.8e-242 841.6 629 66.1
FAN17G0552 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.9e-241 839.3 629 70.1
FAN12G0395 Fragaria x ananassa HOM05D006139 ORTHO05D007681 3.2e-241 838.6 641 69.3
Carub.0001s1670 Capsella rubella HOM05D006139 ORTHO05D007681 5.5e-241 837.8 628 66.7
Thhalv10007085m.g Eutrema salsugineum HOM05D006139 ORTHO05D007681 7.1e-241 837.4 629 66.1
FAN07G2792 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.0e-239 833.6 640 68.8
AT1G16970 Arabidopsis thaliana HOM05D006139 ORTHO05D007681 3.0e-239 832.0 630 66.2
THA.LOC104812308 Tarenaya hassleriana HOM05D006139 ORTHO05D007681 1.9e-238 829.3 628 66.1
Hund19684 Selenicereus undatus HOM05D006139 ORTHO05D007681 1.6e-237 826.2 629 68.2
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 9.0e-236 820.5 629 64.4
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 1.2e-235 820.1 629 64.1
Haze_11079 Corylus avellana HOM05D006139 ORTHO05D007681 1.5e-235 819.7 629 70.9
CARHR017480 Cardamine hirsuta HOM05D006139 ORTHO05D007681 1.3e-234 816.6 630 65.1
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 1.7e-234 816.2 629 64.2
A06p12870 Brassica napus HOM05D006139 ORTHO05D007681 8.4e-234 813.9 629 63.8
AUR62018029 Chenopodium quinoa HOM05D006139 ORTHO05D007681 3.2e-233 812.0 650 65.1
ATR0609G005 Amborella trichopoda HOM05D006139 ORTHO05D007681 1.6e-229 799.7 632 63.8
Zm00001eb116810 Zea mays HOM05D006139 ORTHO05D007681 4.8e-229 798.1 631 63.2
arahy.Tifrunner.gnm1.ann1.JAL8JD Arachis hypogaea HOM05D006139 ORTHO05D007681 1.8e-228 796.2 638 67.2
Dinv44237 Davidia involucrata HOM05D006139 ORTHO05D007681 1.6e-224 783.1 494 78.1
AUR62003718 Chenopodium quinoa HOM05D006139 ORTHO05D007681 1.0e-223 780.4 615 65.9
Lj4A728T41 Lonicera japonica HOM05D006139 ORTHO05D007681 1.5e-222 776.5 596 67.4
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 1.7e-221 773.1 632 61.9
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 6.3e-221 771.2 646 64.4
BraA06t24447Z Brassica rapa HOM05D006139 ORTHO05D007681 8.2e-221 770.8 629 61.7
CAN.G710.40 Capsicum annuum HOM05D006139 ORTHO05D007681 5.9e-219 764.6 628 64.2
vmacro13984 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 3.0e-215 752.3 740 56.2
MBI07_g00628_MAGBIO Magnolia biondii HOM05D006139 ORTHO05D007681 1.4e-212 743.4 627 61.4
Nitab4.5_0001687g0050 Nicotiana tabacum HOM05D006139 ORTHO05D007681 8.8e-191 671.0 589 61.3
Nitab4.5_0001526g0130 Nicotiana tabacum HOM05D006139 ORTHO05D007681 8.3e-189 664.5 637 59.0
ClCG07G016640 Citrullus lanatus HOM05D006139 ORTHO05D007681 2.3e-186 656.4 654 57.3
Peaxi162Scf00286g00443 Petunia axillaris HOM05D006139 ORTHO05D007681 7.2e-185 651.4 627 58.1
Mapoly0113s0020 Marchantia polymorpha HOM05D006139 ORTHO05D007681 2.8e-176 622.9 626 51.4
Oeu013397.2 Olea europaea HOM05D006139 ORTHO05D007681 1.3e-170 604.0 403 74.9
SMO361G0513 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 4.4e-166 589.0 569 52.0
SMO361G0769 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 1.6e-163 580.5 569 51.3
HPP92_015930 Vanilla planifolia HOM05D006139 ORTHO05D007681 4.1e-156 555.8 439 63.8
AagrBONN_evm.TU.Sc2ySwM_228.1556 Anthoceros agrestis HOM05D006139 ORTHO05D007681 1.3e-144 517.7 636 44.2
Cpa.g.sc77.50 Carica papaya HOM05D006139 ORTHO05D007681 2.1e-139 500.4 559 51.3
CDE02G2779 Ceratophyllum demersum HOM05D006139 ORTHO05D007681 1.7e-138 497.3 440 60.7
CBR_g19434 Chara braunii HOM05D006139 ORTHO05D007681 6.9e-135 485.3 627 41.6
Atru.chr2.2053 Acer truncatum HOM05D006139 ORTHO05D007681 6.0e-131 472.2 309 76.4
Pp3c18_7140 Physcomitrium patens HOM05D006139 ORTHO05D007681 6.7e-130 468.8 625 42.7
Aa31LG7G1410 Aethionema arabicum HOM05D006139 ORTHO05D007681 1.6e-128 464.2 629 44.7
TPR.G8879 Trifolium pratense HOM05D006139 ORTHO05D007681 5.0e-117 426.0 296 73.3
SHI27652 Sapria himalayana HOM05D006139 ORTHO05D007681 1.4e-116 424.5 360 62.8
PGSC0003DMG400014069 Solanum tuberosum HOM05D006139 ORTHO05D007681 4.2e-116 422.9 292 73.3
TPR.G8868 Trifolium pratense HOM05D006139 ORTHO05D007681 1.5e-110 404.4 287 69.7
Atru.chr2.2052 Acer truncatum HOM05D006139 ORTHO05D007681 2.6e-110 403.7 271 76.8
TPR.G8907 Trifolium pratense HOM05D006139 ORTHO05D007681 2.0e-89 334.3 228 74.6
DCAR_005496 Daucus carota HOM05D006139 ORTHO05D007681 7.0e-87 325.9 232 68.5
Ca_11423_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 1.3e-85 321.6 231 71.0
SEGI_35314 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 9.4e-84 315.5 247 63.6
DCAR_005495 Daucus carota HOM05D006139 ORTHO05D007681 5.9e-78 296.2 234 65.8
unitig_578.g15953 Utricularia gibba HOM05D006139 ORTHO05D007681 3.8e-69 266.9 236 57.6
Cre13.g607500 Chlamydomonas reinhardtii HOM05D006139 ORTHO05D007681 9.5e-60 235.7 716 29.6
FAN22G0061 Fragaria x ananassa HOM05D006139 ORTHO05D007681 4.7e-59 233.4 171 72.5
Ah.03g143030 Amaranthus hybridus HOM05D006139 ORTHO05D007681 3.4e-57 227.3 179 68.7
Os07g0184900 Oryza sativa ssp. japonica HOM05D006139 ORTHO05D007681 4.6e-54 216.9 144 70.8
unitig_578.g15954 Utricularia gibba HOM05D006139 ORTHO05D004041 3.6e-51 207.2 171 63.7
Hund20183 Selenicereus undatus HOM05D006139 ORTHO05D007681 1.4e-47 195.3 189 59.3
Ca_11425_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 3.2e-47 194.1 135 74.8
Cfa021664 Carpinus fangiana HOM05D006139 ORTHO05D007681 4.4e-41 173.7 599 27.4
arahy.Tifrunner.gnm1.ann1.6RHH59 Arachis hypogaea HOM05D006139 ORTHO05D007681 1.4e-39 168.7 134 64.9
Ca_11424_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 2.1e-35 154.8 105 75.2
CANSAT78G0600 Cannabis sativa HOM05D006139 ORTHO05D007681 1.9e-31 141.7 118 59.3
AUR62043732 Chenopodium quinoa HOM05D006139 ORTHO05D007681 6.2e-27 126.7 92 67.4
SEGI_31905 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 2.1e-19 101.7 74 62.2
MCO14G338 Micromonas commoda HOM05D006139 ORTHO05D007681 1.1e-18 99.4 298 28.9
HanXRQChr13g0406711 Helianthus annuus HOM05D006139 ORTHO05D007681 6.9e-18 96.7 57 77.2
Potri.006G132501 Populus trichocarpa HOM05D006139 ORTHO05D007681 9.9e-17 92.8 78 62.8
CARHR154100 Cardamine hirsuta HOM05D006139 ORTHO05D007681 1.3e-16 92.4 66 63.6
Ah.03g143010 Amaranthus hybridus HOM05D006139 ORTHO05D007681 3.8e-16 90.9 125 44.8
BolC4t22161H Brassica oleracea HOM05D006139 ORTHO05D007681 1.4e-15 89.0 86 55.8
vmacro12608 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 2.3e-13 81.6 45 86.7
Zm00001eb114470 Zea mays HOM05D006139 ORTHO05D007681 8.7e-13 79.7 65 60.0
Dinv25612 Davidia involucrata HOM05D000447 ORTHO05D007681 1.9e-12 78.6 83 54.2
SEGI_11325 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 4.3e-12 77.4 65 56.9
Eucgr.L02132 Eucalyptus grandis HOM05D006139 ORTHO05D007681 4.0e-10 70.9 44 79.5


User provided reference genes

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