Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024982 Carpinus fangiana HOM05D002159 ORTHO05D124127 0.0e+00 1860.9 961 100.0
Nn1g01521 Nelumbo nucifera HOM05D002159 ORTHO05D005625 2.3e-44 185.3 870 24.9
Sc13g0008820 Simmondsia chinensis HOM05D002159 ORTHO05D005625 3.3e-43 181.4 870 24.3
Mapoly0007s0176 Marchantia polymorpha HOM05D002159 ORTHO05D005625 2.8e-42 178.3 876 23.4
Eucgr.K00275 Eucalyptus grandis HOM05D002159 ORTHO05D005625 3.6e-42 177.9 883 25.4
Aqoxy7G00327 Aquilegia oxysepala HOM05D002159 ORTHO05D005625 6.1e-42 177.2 872 25.3
EL10Ac3g05612 Beta vulgaris HOM05D002159 ORTHO05D005625 6.1e-42 177.2 871 25.0
AUR62015961 Chenopodium quinoa HOM05D002159 ORTHO05D005625 6.1e-42 177.2 871 24.1
vmacro06665 Vaccinium macrocarpon HOM05D002159 ORTHO05D005625 8.0e-42 176.8 870 25.1
ATR0680G292 Amborella trichopoda HOM05D002159 ORTHO05D005625 1.0e-41 176.4 871 24.6
AUR62021167 Chenopodium quinoa HOM05D002159 ORTHO05D005625 1.4e-41 176.0 871 24.5
PSO782G0249 Papaver somniferum HOM05D002159 ORTHO05D005625 3.0e-41 174.9 869 23.7
Actinidia25881 Actinidia chinensis HOM05D002159 ORTHO05D005625 8.9e-41 173.3 870 24.3
GSVIVG01028919001 Vitis vinifera HOM05D002159 ORTHO05D005625 1.5e-40 172.6 870 24.7
TWI34G0379 Tripterygium wilfordii HOM05D002159 ORTHO05D005625 2.0e-40 172.2 871 24.8
CiPaw.03G108100 Carya illinoinensis HOM05D002159 ORTHO05D005625 2.6e-40 171.8 869 23.1
Lj2g0019958 Lotus japonicus HOM05D002159 ORTHO05D005625 2.6e-40 171.8 869 25.1
PSO478G3748 Papaver somniferum HOM05D002159 ORTHO05D005625 2.6e-40 171.8 869 23.7
Lj8C239G4 Lonicera japonica HOM05D002159 ORTHO05D005625 3.4e-40 171.4 865 24.2
PGR142G0288 Punica granatum HOM05D002159 ORTHO05D005625 4.4e-40 171.0 885 24.4
QL09p013785 Quercus lobata HOM05D002159 ORTHO05D005625 4.4e-40 171.0 873 23.5
Duzib205G0713 Durio zibethinus HOM05D002159 ORTHO05D005625 5.7e-40 170.6 874 23.9
CSS0044503 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 7.5e-40 170.2 870 24.1
TAR629G0581 Trochodendron aralioides HOM05D002159 ORTHO05D005625 1.3e-39 169.5 870 24.1
CSS0008751 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 1.7e-39 169.1 870 24.3
Sp2g23400 Schrenkiella parvula HOM05D002159 ORTHO05D005625 1.7e-39 169.1 869 24.6
DCAR_026334 Daucus carota HOM05D002159 ORTHO05D005625 2.9e-39 168.3 870 23.6
Solyc03g025540.3 Solanum lycopersicum HOM05D002159 ORTHO05D005625 2.9e-39 168.3 869 24.6
AagrBONN_evm.TU.Sc2ySwM_117.3689 Anthoceros agrestis HOM05D002159 ORTHO05D005625 3.7e-39 167.9 882 24.5
Ciclev10004414m.g Citrus clementina HOM05D002159 ORTHO05D005625 6.4e-39 167.2 870 24.4
Carub.0006s2160 Capsella rubella HOM05D002159 ORTHO05D005625 8.3e-39 166.8 873 24.9
Thhalv10003707m.g Eutrema salsugineum HOM05D002159 ORTHO05D005625 1.4e-38 166.0 870 24.9
Manes.01G126800 Manihot esculenta HOM05D002159 ORTHO05D005625 1.4e-38 166.0 879 24.5
Rhsim03G0187300 Rhododendron simsii HOM05D002159 ORTHO05D005625 1.4e-38 166.0 870 24.5
Lsat_1_v5_gn_2_132660 Lactuca sativa HOM05D002159 ORTHO05D005625 1.8e-38 165.6 870 24.1
Nitab4.5_0004439g0160 Nicotiana tabacum HOM05D002159 ORTHO05D005625 1.8e-38 165.6 888 23.6
Pp3c9_11100 Physcomitrium patens HOM05D002159 ORTHO05D005625 1.8e-38 165.6 874 23.6
Cpa.g.c26789.4 Carica papaya HOM05D002159 ORTHO05D005625 2.4e-38 165.2 871 23.5
HPP92_025730 Vanilla planifolia HOM05D002159 ORTHO05D005625 2.4e-38 165.2 870 24.3
CBR_g4749 Chara braunii HOM05D002159 ORTHO05D005625 4.1e-38 164.5 841 25.2
Sed0009742 Sechium edule HOM05D002159 ORTHO05D005625 4.1e-38 164.5 872 23.9
Hund04761 Selenicereus undatus HOM05D002159 ORTHO05D005625 4.1e-38 164.5 877 23.8
Sopen03g004380 Solanum pennellii HOM05D002159 ORTHO05D005625 5.4e-38 164.1 869 24.2
HPP92_025733 Vanilla planifolia HOM05D002159 ORTHO05D005625 5.4e-38 164.1 866 24.4
THA.LOC104821393 Tarenaya hassleriana HOM05D002159 ORTHO05D005625 7.0e-38 163.7 866 23.9
Atru.chr1.430 Acer truncatum HOM05D002159 ORTHO05D005625 1.2e-37 162.9 886 23.6
AT5G23880 Arabidopsis thaliana HOM05D002159 ORTHO05D005625 1.2e-37 162.9 869 24.1
AL6G35190 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 1.6e-37 162.5 869 24.2
Cfa023191 Carpinus fangiana HOM05D002159 ORTHO05D005625 1.6e-37 162.5 870 23.3
Thecc.03G179100 Theobroma cacao HOM05D002159 ORTHO05D005625 1.6e-37 162.5 869 24.1
Migut.F01111 Erythranthe guttata HOM05D002159 ORTHO05D005625 3.5e-37 161.4 870 23.8
Gohir.D12G258000 Gossypium hirsutum HOM05D002159 ORTHO05D005625 3.5e-37 161.4 870 24.0
CAN.G1175.3 Capsicum annuum HOM05D002159 ORTHO05D005625 4.6e-37 161.0 869 23.8
CsaV3_3G017220 Cucumis sativus L. HOM05D002159 ORTHO05D005625 4.6e-37 161.0 867 23.4
HanXRQChr14g0462121 Helianthus annuus HOM05D002159 ORTHO05D005625 4.6e-37 161.0 869 23.6
Nitab4.5_0000084g0030 Nicotiana tabacum HOM05D002159 ORTHO05D005625 4.6e-37 161.0 870 24.1
Gorai.008G276300 Gossypium raimondii HOM05D002159 ORTHO05D005625 5.9e-37 160.6 870 24.0
Zm00001eb162800 Zea mays HOM05D002159 ORTHO05D005625 5.9e-37 160.6 887 24.2
MELO3C006919.2 Cucumis melo HOM05D002159 ORTHO05D005625 7.8e-37 160.2 867 23.4
Gohir.A12G256700 Gossypium hirsutum HOM05D002159 ORTHO05D005625 7.8e-37 160.2 870 23.9
Peaxi162Scf00444g00532 Petunia axillaris HOM05D002159 ORTHO05D005625 1.0e-36 159.8 875 24.2
TPR.G8152 Trifolium pratense HOM05D002159 ORTHO05D005625 2.3e-36 158.7 870 23.9
ECA238G4262 Erigeron canadensis HOM05D002159 ORTHO05D005625 3.9e-36 157.9 876 23.2
CANSAT21G0489 Cannabis sativa HOM05D002159 ORTHO05D005625 8.6e-36 156.8 869 23.5
Ca_14555_v3 Cicer arietinum L. HOM05D002159 ORTHO05D005625 8.6e-36 156.8 869 24.3
Glyma.16G182300 Glycine max HOM05D002159 ORTHO05D005625 8.6e-36 156.8 869 24.6
MD07G1272900 Malus domestica HOM05D002159 ORTHO05D005625 1.1e-35 156.4 869 23.5
SGA_v2.0_scaffold10G05332 Striga asiatica HOM05D002159 ORTHO05D005625 1.5e-35 156.0 867 23.2
Phvul.004G114000 Phaseolus vulgaris HOM05D002159 ORTHO05D005625 1.9e-35 155.6 869 24.3
A06p34690 Brassica napus HOM05D002159 ORTHO05D005625 2.5e-35 155.2 783 24.9
Glyma.09G136900 Glycine max HOM05D002159 ORTHO05D005625 2.5e-35 155.2 869 24.3
Prupe.2G296200 Prunus persica HOM05D002159 ORTHO05D005625 2.5e-35 155.2 870 24.1
Medtr1g050492 Medicago truncatula HOM05D002159 ORTHO05D005625 3.3e-35 154.8 871 24.0
CDE06G0059 Ceratophyllum demersum HOM05D002159 ORTHO05D005625 4.3e-35 154.5 873 22.6
Lalb_Chr03g0034671 Lupinus albus HOM05D002159 ORTHO05D005625 5.6e-35 154.1 869 23.2
CARHR189680 Cardamine hirsuta HOM05D002159 ORTHO05D005625 1.2e-34 152.9 872 23.6
BraA06t26396Z Brassica rapa HOM05D002159 ORTHO05D005625 2.1e-34 152.1 783 24.6
SalBow2G1087 Salvia bowleyana HOM05D002159 ORTHO05D005625 2.1e-34 152.1 766 24.0
C07p43800 Brassica napus HOM05D002159 ORTHO05D005625 2.8e-34 151.8 783 24.6
Hma1.2p1_1604F.1_g293320 Hydrangea macrophylla HOM05D002159 ORTHO05D005625 2.8e-34 151.8 873 24.2
BolC7t44909H Brassica oleracea HOM05D002159 ORTHO05D005625 4.7e-34 151.0 783 24.6
Os09g0569400 Oryza sativa ssp. japonica HOM05D002159 ORTHO05D005625 6.2e-34 150.6 870 23.6
FAN01G0872 Fragaria x ananassa HOM05D002159 ORTHO05D005625 4.0e-33 147.9 377 30.2
FAN03G1172 Fragaria x ananassa HOM05D002159 ORTHO05D005625 4.0e-33 147.9 910 23.3
FAN03G0857 Fragaria x ananassa HOM05D002159 ORTHO05D005625 5.2e-33 147.5 910 23.3
Potri.001G231800 Populus trichocarpa HOM05D002159 ORTHO05D005625 6.8e-33 147.1 869 24.5
FAN10G0118 Fragaria x ananassa HOM05D002159 ORTHO05D005625 8.9e-33 146.7 377 30.2
Psat0s1874g0200 Pisum sativum HOM05D002159 ORTHO05D005625 8.9e-33 146.7 782 24.7
SMO111G0062 Selaginella moellendorffii HOM05D002159 ORTHO05D005625 8.9e-33 146.7 873 23.3
Sabra16G0139100 Salix brachista HOM05D002159 ORTHO05D005625 2.0e-32 145.6 869 23.9
PRCOL_00000390 Prasinoderma coloniale HOM05D002159 ORTHO05D005625 2.6e-32 145.2 887 24.0
FvH4_7g29660 Fragaria vesca HOM05D002159 ORTHO05D005625 3.4e-32 144.8 377 29.7
FAN06G3579 Fragaria x ananassa HOM05D002159 ORTHO05D005625 3.4e-32 144.8 377 29.7
FAN06G4426 Fragaria x ananassa HOM05D002159 ORTHO05D005625 4.4e-32 144.4 377 29.7
BcaNung01838 Brassica carinata HOM05D002159 ORTHO05D005625 2.2e-31 142.1 373 30.6
COL.COLO4_28056 Corchorus olitorius HOM05D002159 ORTHO05D005625 2.9e-31 141.7 746 24.1
Haze_13669 Corylus avellana HOM05D002159 ORTHO05D005625 3.7e-31 141.4 894 22.4
ClCG05G008140 Citrullus lanatus HOM05D002201 ORTHO05D005625 5.4e-30 137.5 810 22.6
Aa31LG11G3180 Aethionema arabicum HOM05D002159 ORTHO05D005625 7.0e-30 137.1 392 30.4
MCO01G234 Micromonas commoda HOM05D002159 ORTHO05D005625 1.6e-29 136.0 932 23.2
MCO01G235 Micromonas commoda HOM05D002159 ORTHO05D005625 1.6e-29 136.0 932 23.2
unitig_26.g10199 Utricularia gibba HOM05D002159 ORTHO05D005625 8.6e-28 130.2 378 29.6
Dinv28421 Davidia involucrata HOM05D002159 ORTHO05D005625 2.5e-27 128.6 872 23.2
Haze_26919 Corylus avellana HOM05D002159 ORTHO05D005625 2.1e-26 125.6 706 24.1
PSO423G0230 Papaver somniferum HOM05D002159 ORTHO05D005625 6.2e-26 124.0 379 27.2
BcaNung05469 Brassica carinata HOM05D002159 ORTHO05D005625 3.1e-25 121.7 783 23.5
RcHm_v2.0_Chr1g0377671 Rosa chinensis HOM05D002159 ORTHO05D005625 3.4e-24 118.2 299 29.1
arahy.Tifrunner.gnm1.ann1.JGS186 Arachis hypogaea HOM05D002159 ORTHO05D005625 5.8e-24 117.5 298 29.2
HPP92_025761 Vanilla planifolia HOM05D002159 ORTHO05D005625 5.8e-24 117.5 353 28.0
Psat0s2150g0160 Pisum sativum HOM05D002159 ORTHO05D005625 6.0e-21 107.5 289 29.1
Actinidia02884 Actinidia chinensis HOM05D002159 ORTHO05D005625 1.3e-20 106.3 237 32.9
Cre12.g487600 Chlamydomonas reinhardtii HOM05D002159 ORTHO05D005625 1.1e-19 103.2 392 27.3
AL6G35160 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 1.5e-19 102.8 339 28.0
Duzib084G0847 Durio zibethinus HOM05D002159 ORTHO05D005625 1.5e-19 102.8 652 23.5
Actinidia34125 Actinidia chinensis HOM05D002159 ORTHO05D005625 4.3e-19 101.3 255 31.0
Cc02_g02800 Coffea canephora HOM05D002159 ORTHO05D005625 7.3e-19 100.5 255 30.6
arahy.Tifrunner.gnm1.ann1.F9YRCX Arachis hypogaea HOM05D002159 ORTHO05D005625 6.2e-18 97.4 253 29.2
VMungo0464G2116 Vigna mungo HOM05D002159 ORTHO05D005625 4.0e-17 94.7 645 22.3
SHI10393 Sapria himalayana HOM05D002159 ORTHO05D005625 2.0e-16 92.4 175 32.0
Glyma.11G170602 Glycine max HOM05D002159 ORTHO05D005625 3.8e-15 88.2 167 31.7
MD01G1203600 Malus domestica HOM05D002159 ORTHO05D005625 3.2e-14 85.1 677 22.5
Lj1A1000T74 Lonicera japonica HOM05D002159 ORTHO05D005625 4.1e-14 84.7 268 26.9
SEGI_24581 Sequoiadendron giganteum HOM05D002159 ORTHO05D005625 7.1e-14 84.0 202 30.7
RcHm_v2.0_Chr1g0379181 Rosa chinensis HOM05D002159 ORTHO05D005625 9.2e-14 83.6 267 27.7
RcHm_v2.0_Chr1g0379351 Rosa chinensis HOM05D002159 ORTHO05D005625 9.2e-14 83.6 267 27.7
VMungo0464G0478 Vigna mungo HOM05D002159 ORTHO05D005625 1.3e-12 79.7 177 32.8
Ah.13g068620 Amaranthus hybridus HOM05D002159 ORTHO05D005625 3.0e-12 78.6 867 20.0
MBI17_g39903_MAGBIO Magnolia biondii HOM05D002159 ORTHO05D005625 1.1e-11 76.6 229 27.1
Cre12.g498050 Chlamydomonas reinhardtii HOM05D002001 ORTHO05D004100 1.6e-10 72.8 244 23.4
HPP92_015169 Vanilla planifolia HOM05D002001 ORTHO05D004100 1.8e-09 69.3 244 23.4
Cc02_g02790 Coffea canephora HOM05D002159 ORTHO05D005625 1.2e-08 66.6 594 22.1
Glyma.11G171001 Glycine max HOM05D002159 ORTHO05D005625 4.4e-08 64.7 167 25.7
Glyma.11G170601 Glycine max HOM05D002159 ORTHO05D005625 1.3e-07 63.2 220 25.0
MCO04G421 Micromonas commoda HOM05D002001 ORTHO05D004100 8.4e-07 60.5 246 21.1
Aa31sc291G30 Aethionema arabicum HOM05D002001 ORTHO05D004100 1.1e-06 60.1 244 20.9
RcHm_v2.0_Chr1g0378701 Rosa chinensis HOM05D002159 ORTHO05D005625 1.9e-06 59.3 109 33.0
MD15G1429300 Malus domestica HOM05D002001 ORTHO05D004100 9.3e-06 57.0 248 23.0


User provided reference genes

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