Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 0.0e+00 2176.0 1101 100.0
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 8.9e-37 160.2 671 22.8
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 9.8e-36 156.8 1086 21.1
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 1.7e-35 156.0 675 23.3
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 2.2e-35 155.6 665 23.8
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 3.7e-35 154.8 667 23.4
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 4.9e-35 154.5 674 23.6
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 4.9e-35 154.5 657 23.6
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 4.9e-35 154.5 1089 20.9
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 1.4e-34 152.9 674 23.4
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 1.4e-34 152.9 674 23.4
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 1.4e-34 152.9 674 23.4
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 1.4e-34 152.9 1093 21.0
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 3.2e-34 151.8 668 21.7
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 5.4e-34 151.0 695 23.5
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 9.2e-34 150.2 662 23.1
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 2.1e-33 149.1 1084 20.7
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 2.7e-33 148.7 661 23.1
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 1.7e-32 146.0 593 26.1
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 2.5e-31 142.1 672 22.5
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 3.3e-31 141.7 687 22.3
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 5.6e-31 141.0 629 24.3
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 9.5e-31 140.2 563 24.2
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 1.6e-30 139.4 603 22.9
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 2.1e-30 139.0 1054 20.0
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 2.8e-30 138.7 696 21.3
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 2.8e-30 138.7 657 21.5
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.1e-29 136.7 601 24.3
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 2.0e-28 132.5 521 23.8
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 3.4e-28 131.7 593 23.3
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 2.9e-27 128.6 656 22.4
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 1.4e-26 126.3 656 22.1
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 3.2e-26 125.2 660 21.8
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 1.6e-25 122.9 601 22.3
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 2.7e-25 122.1 618 22.2
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 6.0e-25 120.9 954 21.9
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.1e-23 116.7 475 25.3
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 1.8e-21 109.4 274 28.8
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 1.8e-21 109.4 547 21.6
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 3.1e-21 108.6 300 28.0
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 3.1e-21 108.6 305 27.9
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 3.4e-20 105.1 296 27.0
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 1.3e-19 103.2 276 26.1
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 1.7e-19 102.8 276 26.1
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 1.7e-19 102.8 271 29.5
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 2.2e-19 102.4 265 27.5
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 2.9e-19 102.1 265 27.9
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 3.8e-19 101.7 297 26.6
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 3.8e-19 101.7 267 27.0
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 3.8e-19 101.7 265 28.3
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 4.9e-19 101.3 280 26.4
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 4.9e-19 101.3 276 28.3
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 6.4e-19 100.9 275 27.3
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 6.4e-19 100.9 289 26.0
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 8.4e-19 100.5 276 29.7
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 8.4e-19 100.5 278 25.9
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 8.4e-19 100.5 295 26.4
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 8.4e-19 100.5 292 27.1
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 8.4e-19 100.5 282 25.5
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 1.1e-18 100.1 275 26.5
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 1.4e-18 99.8 289 25.6
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 1.4e-18 99.8 293 26.3
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 1.4e-18 99.8 275 26.9
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 1.9e-18 99.4 294 26.2
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 1.9e-18 99.4 279 26.9
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 1.9e-18 99.4 289 26.0
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 2.4e-18 99.0 310 24.8
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 2.4e-18 99.0 296 26.4
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 3.2e-18 98.6 303 25.7
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.2e-18 98.2 268 27.2
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 4.2e-18 98.2 302 26.5
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 4.2e-18 98.2 302 26.5
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 5.4e-18 97.8 294 26.5
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 5.4e-18 97.8 268 26.9
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 5.4e-18 97.8 290 25.9
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 7.1e-18 97.4 320 25.0
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 7.1e-18 97.4 302 26.5
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 9.3e-18 97.1 293 25.6
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 9.3e-18 97.1 314 25.5
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 9.3e-18 97.1 314 25.5
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 9.3e-18 97.1 268 26.9
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.2e-17 96.7 314 25.5
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 1.2e-17 96.7 301 24.9
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 1.2e-17 96.7 286 25.2
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 1.6e-17 96.3 268 26.5
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.6e-17 96.3 314 25.5
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.6e-17 96.3 314 25.5
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 1.6e-17 96.3 285 24.9
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 1.6e-17 96.3 263 27.4
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 2.1e-17 95.9 263 27.0
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 2.7e-17 95.5 286 25.9
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 2.7e-17 95.5 313 24.0
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 4.6e-17 94.7 288 24.7
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 6.0e-17 94.4 294 24.8
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 6.0e-17 94.4 294 24.5
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 7.8e-17 94.0 297 24.9
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 1.0e-16 93.6 275 25.1
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 1.3e-16 93.2 273 27.1
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 1.7e-16 92.8 263 26.6
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 1.7e-16 92.8 263 26.6
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 2.3e-16 92.4 272 25.4
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 2.3e-16 92.4 270 25.6
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 2.3e-16 92.4 302 26.2
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 3.0e-16 92.0 296 25.7
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 3.0e-16 92.0 264 27.7
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 3.9e-16 91.7 295 24.7
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 3.9e-16 91.7 265 26.0
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 3.9e-16 91.7 311 24.8
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 5.1e-16 91.3 311 24.8
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 5.1e-16 91.3 266 25.6
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 5.1e-16 91.3 266 25.6
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 6.6e-16 90.9 293 24.9
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 6.6e-16 90.9 300 24.7
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 8.7e-16 90.5 264 25.8
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 8.7e-16 90.5 268 25.0
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 8.7e-16 90.5 275 25.1
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 4.3e-15 88.2 278 27.0
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 1.3e-14 86.7 292 25.0
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 1.3e-14 86.7 263 25.9
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 2.8e-14 85.5 268 26.9
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 2.8e-14 85.5 306 25.8
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 3.6e-14 85.1 176 29.5
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 8.1e-14 84.0 313 24.3
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 1.4e-13 83.2 457 23.2
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 1.4e-13 83.2 261 26.1
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 3.1e-13 82.0 140 33.6
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 4.4e-12 78.2 159 31.4
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 7.6e-12 77.4 279 21.5
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.2e-11 75.9 138 33.3
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 3.8e-11 75.1 250 24.4
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.4e-11 74.3 272 24.6
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 8.4e-11 73.9 140 30.7
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 1.1e-10 73.6 168 28.0
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.1e-10 73.6 159 32.1
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 1.9e-10 72.8 140 30.0
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 5.1e-08 64.7 101 32.7
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 5.1e-08 64.7 101 32.7
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 5.1e-08 64.7 101 32.7
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 5.1e-08 64.7 101 32.7
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 1.5e-07 63.2 308 23.7


User provided reference genes

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