Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa016252 Carpinus fangiana HOM05D003934 ORTHO05D005108 1.3e-208 729.6 375 100.0
Haze_00188 Corylus avellana HOM05D003934 ORTHO05D005108 4.0e-191 671.4 494 75.1
ClCG05G008860 Citrullus lanatus HOM05D003934 ORTHO05D005108 2.4e-175 619.0 375 84.0
QL09p009520 Quercus lobata HOM05D003934 ORTHO05D005108 1.0e-173 613.6 510 66.5
Nitab4.5_0007081g0020 Nicotiana tabacum HOM05D003934 ORTHO05D005108 2.9e-173 612.1 387 79.6
CiPaw.05G251900 Carya illinoinensis HOM05D003934 ORTHO05D005108 1.2e-171 606.7 511 65.9
vmacro06541 Vaccinium macrocarpon HOM05D003934 ORTHO05D005108 7.9e-171 604.0 427 72.1
Manes.06G159600 Manihot esculenta HOM05D003934 ORTHO05D005108 8.2e-168 594.0 510 64.3
FAN10G3094 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.2e-166 590.1 441 69.4
arahy.Tifrunner.gnm1.ann1.W6P66N Arachis hypogaea HOM05D003934 ORTHO05D005108 1.5e-166 589.7 511 64.6
MD07G1290300 Malus domestica HOM05D003934 ORTHO05D005108 3.5e-166 588.6 510 64.3
arahy.Tifrunner.gnm1.ann1.WX46MS Arachis hypogaea HOM05D003934 ORTHO05D005108 4.5e-166 588.2 511 64.4
Phvul.009G053700 Phaseolus vulgaris HOM05D003934 ORTHO05D005108 5.9e-166 587.8 510 63.7
Prupe.2G311500 Prunus persica HOM05D003934 ORTHO05D005108 7.7e-166 587.4 512 63.9
MD01G1219700 Malus domestica HOM05D003934 ORTHO05D005108 1.0e-165 587.0 510 64.1
Eucgr.A01467 Eucalyptus grandis HOM05D003934 ORTHO05D005108 1.7e-165 586.3 510 63.3
CANSAT11G0158 Cannabis sativa HOM05D003934 ORTHO05D005108 8.5e-165 583.9 510 63.1
Medtr3g091250 Medicago truncatula HOM05D003934 ORTHO05D005108 4.2e-164 581.6 510 63.9
Potri.012G012800 Populus trichocarpa HOM05D003934 ORTHO05D005108 5.5e-164 581.3 510 62.7
Lj1g0022752 Lotus japonicus HOM05D003934 ORTHO05D005108 7.2e-164 580.9 510 63.7
Potri.015G017200 Populus trichocarpa HOM05D003934 ORTHO05D005108 9.4e-164 580.5 510 62.9
Ah.07g205840 Amaranthus hybridus HOM05D003934 ORTHO05D005108 1.6e-163 579.7 406 71.4
Ca_16696_v3 Cicer arietinum L. HOM05D003934 ORTHO05D005108 1.6e-163 579.7 527 61.9
Duzib205G1942 Durio zibethinus HOM05D003934 ORTHO05D005108 2.7e-163 578.9 510 62.5
Lalb_Chr08g0240341 Lupinus albus HOM05D003934 ORTHO05D005108 2.7e-163 578.9 511 63.4
Glyma.04G236800 Glycine max HOM05D003934 ORTHO05D005108 3.6e-163 578.6 510 63.1
Psat5g078160 Pisum sativum HOM05D003934 ORTHO05D005108 4.7e-163 578.2 514 63.2
FvH4_7g06390 Fragaria vesca HOM05D003934 ORTHO05D005108 8.0e-163 577.4 483 63.8
Glyma.06G127500 Glycine max HOM05D003934 ORTHO05D005108 3.0e-162 575.5 510 62.7
GSVIVG01038711001 Vitis vinifera HOM05D003934 ORTHO05D005108 3.9e-162 575.1 510 61.2
CSS0014973 Camellia sinensis var. sinensis HOM05D003934 ORTHO05D005108 6.7e-162 574.3 510 62.7
Actinidia08639 Actinidia chinensis HOM05D003934 ORTHO05D005108 8.8e-162 573.9 510 60.8
Duzib068G1159 Durio zibethinus HOM05D003934 ORTHO05D005108 8.8e-162 573.9 510 62.2
Hma1.2p1_1188F.1_g265250 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 1.1e-161 573.5 510 60.4
Actinidia34211 Actinidia chinensis HOM05D003934 ORTHO05D005108 1.5e-161 573.2 510 60.6
RcHm_v2.0_Chr1g0331941 Rosa chinensis HOM05D003934 ORTHO05D005108 7.4e-161 570.9 510 61.0
Nn3g19008 Nelumbo nucifera HOM05D003934 ORTHO05D005108 2.2e-160 569.3 510 62.2
FAN03G1965 Fragaria x ananassa HOM05D003934 ORTHO05D005108 4.8e-160 568.2 510 60.6
FAN06G1603 Fragaria x ananassa HOM05D003934 ORTHO05D005108 4.8e-160 568.2 510 60.6
Thecc.03G196100 Theobroma cacao HOM05D003934 ORTHO05D005108 4.8e-160 568.2 510 61.4
TAR375G0202 Trochodendron aralioides HOM05D003934 ORTHO05D005108 6.3e-160 567.8 510 62.0
PGR042G0302 Punica granatum HOM05D003934 ORTHO05D005108 1.1e-159 567.0 510 61.6
SalBow4G2493 Salvia bowleyana HOM05D003934 ORTHO05D005108 1.4e-159 566.6 377 74.8
FAN01G0480 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.4e-159 565.8 510 60.4
Sabra15G0013200 Salix brachista HOM05D003934 ORTHO05D005108 2.4e-159 565.8 510 61.4
CAN.G108.66 Capsicum annuum HOM05D003934 ORTHO05D005108 3.1e-159 565.5 509 60.1
SalBow4G2054 Salvia bowleyana HOM05D003934 ORTHO05D005108 4.1e-159 565.1 377 74.8
COL.COLO4_11261 Corchorus olitorius HOM05D003934 ORTHO05D005108 7.0e-159 564.3 510 61.2
Cpa.g.sc3.69 Carica papaya HOM05D003934 ORTHO05D005108 9.1e-159 563.9 431 70.5
Lj1C1015T5 Lonicera japonica HOM05D003934 ORTHO05D005108 1.6e-158 563.1 510 61.6
CsaV3_3G027880 Cucumis sativus L. HOM05D003934 ORTHO05D005108 2.6e-158 562.4 510 62.2
Gorai.006G201100 Gossypium raimondii HOM05D003934 ORTHO05D005108 5.9e-158 561.2 510 61.4
Gohir.D09G179100 Gossypium hirsutum HOM05D003934 ORTHO05D005108 2.2e-157 559.3 510 61.2
Nitab4.5_0000714g0110 Nicotiana tabacum HOM05D003934 ORTHO05D005108 2.9e-157 558.9 511 59.9
Ciclev10004777m.g Citrus clementina HOM05D003934 ORTHO05D005108 6.5e-157 557.8 512 61.9
Sed0008190 Sechium edule HOM05D003934 ORTHO05D005108 1.9e-156 556.2 510 62.0
THA.LOC104820263 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 5.5e-156 554.7 510 60.6
Gohir.A09G184300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 7.2e-156 554.3 511 60.9
Oeu041318.2 Olea europaea HOM05D003934 ORTHO05D005108 2.7e-155 552.4 418 70.6
PGSC0003DMG400009079 Solanum tuberosum HOM05D003934 ORTHO05D005108 2.7e-155 552.4 511 61.3
Sopen03g023200 Solanum pennellii HOM05D003934 ORTHO05D005108 3.6e-155 552.0 511 61.1
CDE10G0188 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 8.0e-155 550.8 510 59.8
Solyc03g083430.3 Solanum lycopersicum HOM05D003934 ORTHO05D005108 1.4e-154 550.1 511 61.1
Gohir.A11G232300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 2.3e-154 549.3 510 60.4
MSTRG.8665 Avicennia marina HOM05D003934 ORTHO05D005108 5.2e-154 548.1 512 58.2
THA.LOC104816810 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 8.8e-154 547.4 510 60.2
Gohir.D11G243500 Gossypium hirsutum HOM05D003934 ORTHO05D005108 1.2e-153 547.0 510 60.0
Cc02_g01680 Coffea canephora HOM05D003934 ORTHO05D005108 1.5e-153 546.6 513 59.1
AL6G16130 Arabidopsis lyrata HOM05D003934 ORTHO05D005108 3.3e-153 545.4 509 59.1
Hund11672 Selenicereus undatus HOM05D003934 ORTHO05D005108 9.7e-153 543.9 507 57.8
Migut.F00226 Erythranthe guttata HOM05D003934 ORTHO05D005108 2.8e-152 542.3 512 57.2
Carub.0006s0504 Capsella rubella HOM05D003934 ORTHO05D005108 3.7e-152 542.0 510 57.5
Lsat_1_v5_gn_9_58300 Lactuca sativa HOM05D003934 ORTHO05D005108 4.8e-152 541.6 504 57.9
AT5G06160 Arabidopsis thaliana HOM05D003934 ORTHO05D005108 1.1e-151 540.4 505 58.2
Aa31LG11G7140 Aethionema arabicum HOM05D003934 ORTHO05D005108 3.1e-151 538.9 510 59.2
Thhalv10013305m.g Eutrema salsugineum HOM05D003934 ORTHO05D005108 9.1e-151 537.3 508 57.1
HPP92_021551 Vanilla planifolia HOM05D003934 ORTHO05D005108 4.5e-150 535.0 510 58.2
EL10Ac3g05301 Beta vulgaris HOM05D003934 ORTHO05D005108 1.7e-149 533.1 510 57.8
SGA_v2.0_scaffold44G16789 Striga asiatica HOM05D003934 ORTHO05D005108 2.9e-149 532.3 512 56.6
Sp6g36730 Schrenkiella parvula HOM05D003934 ORTHO05D005108 3.8e-149 531.9 510 58.2
HPP92_021541 Vanilla planifolia HOM05D003934 ORTHO05D005108 7.2e-148 527.7 510 57.6
AUR62006111 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.0e-146 523.9 515 55.9
Atru.chr1.153 Acer truncatum HOM05D003934 ORTHO05D005108 2.3e-146 522.7 488 60.7
PSO170G4033 Papaver somniferum HOM05D003934 ORTHO05D005108 2.3e-146 522.7 514 57.6
PSO063G5737 Papaver somniferum HOM05D003934 ORTHO05D005108 3.0e-146 522.3 514 57.8
ECA232G2652 Erigeron canadensis HOM05D003934 ORTHO05D005108 2.2e-144 516.2 518 55.6
AUR62019377 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.7e-142 509.2 579 49.7
C02p02610 Brassica napus HOM05D003934 ORTHO05D005108 3.5e-142 508.8 509 58.2
Oeu041045.2 Olea europaea HOM05D003934 ORTHO05D005108 3.5e-142 508.8 559 52.4
ATR0602G008 Amborella trichopoda HOM05D003934 ORTHO05D005108 4.5e-142 508.4 511 56.4
CDE10G0405 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 5.9e-142 508.1 507 56.4
CARHR206870 Cardamine hirsuta HOM05D003934 ORTHO05D005108 1.7e-141 506.5 512 57.0
BraA02t04872Z Brassica rapa HOM05D003934 ORTHO05D005108 5.0e-141 505.0 509 57.6
BolC2t06227H Brassica oleracea HOM05D003934 ORTHO05D005108 8.6e-141 504.2 509 57.8
FAN24G3520 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.3e-140 502.3 517 55.5
TWI14G0523 Tripterygium wilfordii HOM05D003934 ORTHO05D005108 1.2e-134 483.8 510 55.3
Mapoly0116s0041 Marchantia polymorpha HOM05D003934 ORTHO05D005108 2.3e-133 479.6 512 53.3
Os03g0717600 Oryza sativa ssp. japonica HOM05D003934 ORTHO05D005108 8.6e-133 477.6 509 53.6
FvH4_5g28470 Fragaria vesca HOM05D003934 ORTHO05D005108 7.5e-129 464.5 431 59.4
A03p02600 Brassica napus HOM05D003934 ORTHO05D005108 1.3e-128 463.8 513 51.5
C03p02940 Brassica napus HOM05D003934 ORTHO05D005108 1.7e-128 463.4 511 51.1
Peaxi162Scf00550g00530 Petunia axillaris HOM05D003934 ORTHO05D005108 8.3e-128 461.1 511 53.0
BcaB01g05979 Brassica carinata HOM05D003934 ORTHO05D005108 1.4e-127 460.3 511 50.9
BolC3t12849H Brassica oleracea HOM05D003934 ORTHO05D005108 9.2e-127 457.6 515 50.7
BraA03t09621Z Brassica rapa HOM05D003934 ORTHO05D005108 2.0e-126 456.4 513 50.9
HanXRQChr09g0252981 Helianthus annuus HOM05D003934 ORTHO05D005108 3.5e-126 455.7 476 54.0
PSO782G1765 Papaver somniferum HOM05D003934 ORTHO05D005108 3.0e-125 452.6 452 54.6
FAN19G2010 Fragaria x ananassa HOM05D003934 ORTHO05D005108 6.6e-125 451.4 491 55.4
Pp3c5_21100 Physcomitrium patens HOM05D003934 ORTHO05D005108 1.5e-124 450.3 512 51.2
FvH4_1g22860 Fragaria vesca HOM05D003934 ORTHO05D005108 1.9e-124 449.9 505 54.1
SMO119G0296 Selaginella moellendorffii HOM05D003934 ORTHO05D005108 2.0e-121 439.9 512 50.8
FAN26G2519 Fragaria x ananassa HOM05D003934 ORTHO05D005108 8.3e-120 434.5 506 53.0
FAN23G2330 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.2e-118 430.6 505 52.3
Sabra12G0018300 Salix brachista HOM05D003934 ORTHO05D005108 1.7e-112 410.2 550 47.5
Aqoxy1G00997 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 4.1e-111 405.6 375 59.7
MBI07_g07099_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 2.1e-110 403.3 245 79.2
BcaB05g21680 Brassica carinata HOM05D003934 ORTHO05D005108 3.0e-109 399.4 787 37.5
FAN18G2200 Fragaria x ananassa HOM05D003934 ORTHO05D005108 8.4e-104 381.3 408 53.2
Zm00001eb156600 Zea mays HOM05D003934 ORTHO05D005108 1.2e-97 360.9 247 76.5
HanXRQChr09g0252971 Helianthus annuus HOM05D003934 ORTHO05D005108 9.9e-97 357.8 541 43.3
CBR_g4095 Chara braunii HOM05D003934 ORTHO05D005108 3.8e-96 355.9 382 51.0
Cre06.g297750 Chlamydomonas reinhardtii HOM05D003934 ORTHO05D005108 1.9e-95 353.6 553 40.3
Aqoxy1G00994 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 4.8e-91 339.0 342 54.1
DCAR_026768 Daucus carota HOM05D003934 ORTHO05D005108 7.6e-89 331.6 288 60.1
FAN28G1126 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.4e-87 325.5 410 51.2
MCO08G102 Micromonas commoda HOM05D003934 ORTHO05D005108 4.3e-84 315.8 507 41.0
ATR0602G148 Amborella trichopoda HOM05D003934 ORTHO05D005108 5.3e-82 308.9 182 84.1
FAN27G0411 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.0e-81 307.0 420 47.1
DCAR_009017 Daucus carota HOM05D003934 ORTHO05D005108 2.9e-80 303.1 183 79.8
FvH4_7g05370 Fragaria vesca HOM05D003934 ORTHO05D005108 6.5e-80 302.0 536 41.6
Gorai.007G258600 Gossypium raimondii HOM05D003934 ORTHO05D005108 1.1e-76 291.2 369 48.8
AUR62019431 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.9e-76 290.4 297 50.8
Sc25g0000870 Simmondsia chinensis HOM05D003934 ORTHO05D005108 9.0e-74 281.6 368 47.6
AUR62031013 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.4e-71 274.2 307 51.5
SEGI_10674 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 5.5e-71 272.3 150 83.3
AUR62034796 Chenopodium quinoa HOM05D003934 ORTHO05D005108 3.5e-70 269.6 287 52.6
FvH4_2g12040 Fragaria vesca HOM05D003934 ORTHO05D005108 4.6e-70 269.2 349 47.0
FAN01G0659 Fragaria x ananassa HOM05D003934 ORTHO05D005108 6.9e-66 255.4 475 39.8
PRCOL_00004948 Prasinoderma coloniale HOM05D003934 ORTHO05D005108 2.6e-65 253.4 521 34.4
MBI07_g07098_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 6.9e-58 228.8 140 80.7
TPR.G17291 Trifolium pratense HOM05D003934 ORTHO05D005108 1.3e-56 224.6 131 84.7
Haze_26996 Corylus avellana HOM05D003934 ORTHO05D005108 2.9e-56 223.4 246 51.6
AUR62007347 Chenopodium quinoa HOM05D003934 ORTHO05D005108 6.1e-54 215.7 254 48.8
FAN10G2167 Fragaria x ananassa HOM05D003934 ORTHO05D005108 8.8e-53 211.8 467 37.5
Prupe.2G260300 Prunus persica HOM05D003934 ORTHO05D005108 7.0e-50 202.2 413 38.0
FAN10G1096 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.9e-49 199.1 460 36.7
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 2.5e-47 193.7 517 30.8
SEGI_10754 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 2.5e-47 193.7 139 69.1
BcaC08g44628 Brassica carinata HOM05D003934 ORTHO05D019879 2.7e-46 190.3 359 37.9
C06p21480 Brassica napus HOM05D003934 ORTHO05D019879 2.7e-46 190.3 359 37.9
BraA07t29851Z Brassica rapa HOM05D003934 ORTHO05D019879 6.1e-46 189.1 354 37.9
BolC6t37330H Brassica oleracea HOM05D003934 ORTHO05D019879 1.4e-45 188.0 357 37.8
AagrBONN_evm.TU.Sc2ySwM_368.1804 Anthoceros agrestis HOM05D003934 ORTHO05D005108 8.2e-43 178.7 131 65.6
Aqoxy2G03740 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 7.0e-42 175.6 124 64.5
SEGI_13646 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 1.0e-37 161.8 98 80.6
A07p21690 Brassica napus HOM05D003934 ORTHO05D019879 5.4e-34 149.4 315 36.2
AUR62031016 Chenopodium quinoa HOM05D003934 ORTHO05D005108 9.8e-28 128.6 113 53.1
BcaB02g07780 Brassica carinata HOM05D003934 ORTHO05D019879 1.0e-21 108.6 266 35.0
Aqoxy1G01000 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 2.7e-17 94.0 81 59.3
FAN07G2332 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.0e-13 82.0 119 46.2
HanXRQChr09g0252591 Helianthus annuus HOM05D003934 ORTHO05D019879 2.6e-12 77.4 50 70.0
FAN07G1716 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.7e-11 74.7 67 59.7
Sabra11G0089700 Salix brachista HOM05D001236 ORTHO05D001090 1.7e-11 74.7 58 67.2
Hma1.2p1_1973F.1_g309600 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 2.9e-11 73.9 34 91.2


User provided reference genes

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