Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006298 Carpinus fangiana HOM05D006570 ORTHO05D008193 2.3e-254 881.7 437 100.0
Haze_04512 Corylus avellana HOM05D006570 ORTHO05D008193 2.7e-239 831.6 432 94.9
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 6.3e-204 714.1 432 81.0
Atru.chr6.3468 Acer truncatum HOM05D006570 ORTHO05D008193 2.4e-179 632.5 436 71.6
Lj3g0023743 Lotus japonicus HOM05D006570 ORTHO05D008193 1.6e-175 619.8 438 69.2
Ca_23570_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 1.4e-174 616.7 435 69.2
Ca_23579_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 1.4e-174 616.7 435 69.2
Potri.014G198000 Populus trichocarpa HOM05D006570 ORTHO05D008193 5.8e-173 611.3 439 68.3
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 2.9e-172 609.0 434 68.4
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 1.1e-171 607.1 437 69.6
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 7.1e-171 604.4 434 66.8
Prupe.6G214800 Prunus persica HOM05D006570 ORTHO05D008193 3.5e-170 602.1 419 70.2
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 6.6e-169 597.8 429 69.9
TPR.G5123 Trifolium pratense HOM05D006570 ORTHO05D008193 8.7e-169 597.4 431 68.0
CANSAT01G0840 Cannabis sativa HOM05D006570 ORTHO05D008193 3.3e-168 595.5 430 67.7
TWI18G1431 Tripterygium wilfordii HOM05D006570 ORTHO05D008193 3.3e-168 595.5 424 69.3
Medtr8g028105 Medicago truncatula HOM05D006570 ORTHO05D008193 9.6e-168 594.0 431 68.4
Dinv28772 Davidia involucrata HOM05D006570 ORTHO05D008193 1.6e-167 593.2 441 67.8
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 2.1e-167 592.8 439 67.9
Duzib133G0843 Durio zibethinus HOM05D006570 ORTHO05D008193 2.4e-166 589.3 439 67.2
FvH4_3g28500 Fragaria vesca HOM05D006570 ORTHO05D008193 3.1e-166 589.0 432 66.9
RcHm_v2.0_Chr5g0052821 Rosa chinensis HOM05D006570 ORTHO05D008193 4.4e-165 585.1 432 67.6
TAR362G0032 Trochodendron aralioides HOM05D006570 ORTHO05D008193 9.9e-165 583.9 428 67.1
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 8.4e-164 580.9 410 70.5
FAN21G3910 Fragaria x ananassa HOM05D006570 ORTHO05D008193 8.4e-164 580.9 428 67.1
Cpa.g.sc8.9 Carica papaya HOM05D006570 ORTHO05D008193 1.1e-163 580.5 442 66.7
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 1.4e-163 580.1 444 66.4
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 2.4e-163 579.3 441 65.8
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 2.7e-162 575.9 443 66.1
Lj2A1109T67 Lonicera japonica HOM05D006570 ORTHO05D008193 3.5e-162 575.5 435 66.7
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 6.0e-162 574.7 439 66.1
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 6.0e-162 574.7 439 66.1
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 6.0e-162 574.7 426 66.9
MD15G1141300 Malus domestica HOM05D006570 ORTHO05D008193 7.8e-162 574.3 407 71.5
Actinidia11648 Actinidia chinensis HOM05D006570 ORTHO05D008193 1.7e-161 573.2 414 68.8
Hma1.2p1_0834F.1_g225720 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 5.1e-161 571.6 402 69.9
Sabra14G0132400 Salix brachista HOM05D006570 ORTHO05D008193 7.3e-160 567.8 524 57.3
ClCG06G001630 Citrullus lanatus HOM05D006570 ORTHO05D008193 1.3e-159 567.0 419 69.2
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 2.8e-159 565.8 438 66.0
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 5.3e-158 561.6 444 64.6
Aa31sc565G50 Aethionema arabicum HOM05D006570 ORTHO05D008193 9.0e-158 560.8 430 65.6
Migut.D00755 Erythranthe guttata HOM05D006570 ORTHO05D008193 7.6e-157 557.8 433 65.8
COL.COLO4_19720 Corchorus olitorius HOM05D006570 ORTHO05D008193 8.4e-156 554.3 399 68.4
SalBow6G3933 Salvia bowleyana HOM05D006570 ORTHO05D008193 1.9e-155 553.1 438 62.3
Cc01_g15710 Coffea canephora HOM05D006570 ORTHO05D008193 3.2e-155 552.4 445 62.9
Sopen09g012610 Solanum pennellii HOM05D006570 ORTHO05D008193 7.1e-155 551.2 415 66.0
Solyc09g018850.3 Solanum lycopersicum HOM05D006570 ORTHO05D008193 9.3e-155 550.8 415 66.0
Oeu020442.2 Olea europaea HOM05D006570 ORTHO05D008193 1.2e-154 550.4 431 65.0
SalBow2G2795 Salvia bowleyana HOM05D006570 ORTHO05D008193 2.7e-154 549.3 438 61.9
Ah.11g050650 Amaranthus hybridus HOM05D006570 ORTHO05D008193 1.8e-153 546.6 429 64.1
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 8.7e-153 544.3 423 65.5
PGSC0003DMG400020287 Solanum tuberosum HOM05D006570 ORTHO05D008193 1.1e-152 543.9 412 65.3
AL9U11910 Arabidopsis lyrata HOM05D006570 ORTHO05D008193 2.5e-152 542.7 419 64.0
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 9.6e-152 540.8 417 64.5
HanXRQChr16g0508391 Helianthus annuus HOM05D006570 ORTHO05D008193 9.6e-152 540.8 416 64.4
GSVIVG01004124001 Vitis vinifera HOM05D006570 ORTHO05D008193 1.3e-151 540.4 420 65.2
Carub.0007s3008 Capsella rubella HOM05D006570 ORTHO05D008193 4.8e-151 538.5 419 64.4
Peaxi162Scf12724g00014 Petunia axillaris HOM05D006570 ORTHO05D008193 9.0e-150 534.3 412 64.3
Sp7g09050 Schrenkiella parvula HOM05D006570 ORTHO05D008193 3.4e-149 532.3 440 61.8
AT4G12740 Arabidopsis thaliana HOM05D006570 ORTHO05D008193 5.8e-149 531.6 433 62.1
BcaC02g09469 Brassica carinata HOM05D006570 ORTHO05D008193 1.0e-148 530.8 430 63.0
BcaB03g16147 Brassica carinata HOM05D006570 ORTHO05D008193 1.3e-148 530.4 438 61.6
C04p43140 Brassica napus HOM05D006570 ORTHO05D008193 1.3e-148 530.4 430 63.0
Nitab4.5_0005967g0010 Nicotiana tabacum HOM05D006570 ORTHO05D008193 2.2e-148 529.6 417 63.3
A04p09180 Brassica napus HOM05D006570 ORTHO05D008193 3.8e-148 528.9 438 62.1
Psat4g158840 Pisum sativum HOM05D006570 ORTHO05D008193 1.4e-147 526.9 372 70.4
EL10Ac5g10565 Beta vulgaris HOM05D006570 ORTHO05D008193 5.5e-147 525.0 397 65.7
CARHR218120 Cardamine hirsuta HOM05D006570 ORTHO05D008193 1.6e-146 523.5 437 61.8
THA.LOC104815379 Tarenaya hassleriana HOM05D006570 ORTHO05D008193 2.7e-146 522.7 432 62.0
Aqoxy1G01428 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 4.6e-146 521.9 447 60.4
Aqoxy7G03970 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 4.6e-146 521.9 447 60.4
Thhalv10024575m.g Eutrema salsugineum HOM05D006570 ORTHO05D008193 1.0e-145 520.8 409 63.8
Sc05g0001500 Simmondsia chinensis HOM05D006570 ORTHO05D008193 5.1e-145 518.5 460 58.7
MELO3C022371.2 Cucumis melo HOM05D006570 ORTHO05D008193 1.6e-143 513.5 410 65.4
Nitab4.5_0009028g0030 Nicotiana tabacum HOM05D006570 ORTHO05D008193 6.2e-143 511.5 441 61.2
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 8.2e-143 511.1 433 60.5
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 6.9e-142 508.1 401 64.8
BolC4t25891H Brassica oleracea HOM05D006570 ORTHO05D008193 4.5e-141 505.4 421 62.2
AUR62008045 Chenopodium quinoa HOM05D006570 ORTHO05D008193 4.9e-140 501.9 418 61.5
AUR62032342 Chenopodium quinoa HOM05D006570 ORTHO05D008193 4.9e-140 501.9 418 61.5
BraA04t16613Z Brassica rapa HOM05D006570 ORTHO05D008193 6.5e-140 501.5 436 60.1
AUR62028620 Chenopodium quinoa HOM05D006570 ORTHO05D008193 6.5e-140 501.5 432 59.0
Hund09495 Selenicereus undatus HOM05D006570 ORTHO05D008193 1.9e-139 500.0 358 67.0
MBI10_g46813_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 4.6e-138 495.4 430 58.8
CAN.G3.13 Capsicum annuum HOM05D006570 ORTHO05D008193 1.0e-137 494.2 385 62.9
ATR0743G076 Amborella trichopoda HOM05D006570 ORTHO05D008193 1.8e-137 493.4 408 61.8
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 8.7e-137 491.1 391 64.5
SHI10196 Sapria himalayana HOM05D006570 ORTHO05D008193 4.1e-134 482.3 425 57.6
HPP92_007590 Vanilla planifolia HOM05D006570 ORTHO05D008193 9.0e-134 481.1 421 59.6
CDE09G0147 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 1.1e-131 474.2 414 58.2
Hma1.2p1_0834F.1_g225710 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 6.1e-130 468.4 366 64.8
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 2.2e-127 459.9 401 60.3
Zm00001eb411200 Zea mays HOM05D006570 ORTHO05D008193 1.1e-126 457.6 437 55.6
Os12g0211400 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 3.8e-124 449.1 418 55.0
FAN25G2405 Fragaria x ananassa HOM05D006570 ORTHO05D008193 1.9e-123 446.8 563 45.6
SEGI_12299 Sequoiadendron giganteum HOM05D006570 ORTHO05D008193 4.7e-122 442.2 440 53.0
Os12g0212100 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 1.8e-113 413.7 355 59.2
Hma1.2p1_1756F.1_g301050 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 5.2e-113 412.1 320 64.7
unitig_90.g27554 Utricularia gibba HOM05D006570 ORTHO05D008193 3.7e-111 406.0 435 52.9
QL01p050877 Quercus lobata HOM05D006570 ORTHO05D008193 3.6e-106 389.4 263 74.5
Eucgr.H00676 Eucalyptus grandis HOM05D006570 ORTHO05D008193 1.0e-105 387.9 314 63.7
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 5.7e-104 382.1 463 47.3
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 2.8e-103 379.8 429 49.9
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 1.0e-97 361.3 393 49.6
MBI10_g40441_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 2.3e-92 343.6 316 56.6
FAN11G0847 Fragaria x ananassa HOM05D006570 ORTHO05D008193 5.2e-89 332.4 247 63.2
SMO202G0040 Selaginella moellendorffii HOM05D006570 ORTHO05D008193 1.3e-84 317.8 296 57.4
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 2.1e-74 283.9 411 42.1
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 3.7e-71 273.1 463 39.1
GSVIVG01038286001 Vitis vinifera HOM05D006570 ORTHO05D008193 6.2e-58 229.2 184 60.3
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 4.0e-57 226.5 290 44.8
CSS0008113 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 2.1e-53 214.2 126 80.2
CSS0032158 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 2.1e-53 214.2 126 80.2
QL01p050896 Quercus lobata HOM05D006570 ORTHO05D008193 3.8e-47 193.4 112 79.5
QL05p014267 Quercus lobata HOM05D006570 ORTHO05D008193 9.6e-43 178.7 190 53.7
QL05p014599 Quercus lobata HOM05D006570 ORTHO05D008193 1.6e-42 177.9 128 71.9
Ca_29093_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 1.3e-39 168.3 219 40.2
DCAR_012713 Daucus carota HOM05D006570 ORTHO05D008193 3.8e-39 166.8 132 63.6
Glyma.16G028601 Glycine max HOM05D006570 ORTHO05D008193 4.9e-31 139.8 116 56.9
CDE02G1275 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 1.4e-30 138.3 113 61.1
CBR_g38520 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-22 112.1 68 72.1
PGR142G0081 Punica granatum HOM05D006570 ORTHO05D008193 2.2e-18 97.8 118 49.2
CBR_g38518 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-10 70.5 47 63.8
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 8.5e-07 59.3 226 26.1
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 1.9e-06 58.2 187 26.7
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 2.5e-06 57.8 188 28.2
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 2.5e-06 57.8 188 28.2
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 3.2e-06 57.4 186 27.4
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 3.2e-06 57.4 187 27.3
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 3.2e-06 57.4 148 30.4
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 4.2e-06 57.0 193 26.9
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 5.5e-06 56.6 189 27.0
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 9.4e-06 55.8 204 27.0
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 9.4e-06 55.8 205 27.3


User provided reference genes

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