Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.6e-180 636.0 327 100.0
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 1.1e-171 606.7 354 90.7
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 7.7e-162 573.9 324 89.8
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.1e-147 526.9 326 82.2
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.4e-147 526.6 330 80.6
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 3.1e-147 525.4 330 80.3
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 5.9e-146 521.2 327 80.7
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 1.9e-144 516.2 325 79.7
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.2e-143 513.5 326 79.1
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 8.0e-143 510.8 326 77.3
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 1.0e-142 510.4 344 74.7
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 1.8e-142 509.6 322 80.7
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 3.0e-142 508.8 324 77.8
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 4.0e-142 508.4 325 77.8
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 5.2e-142 508.1 398 69.8
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 6.7e-142 507.7 327 78.9
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 8.8e-142 507.3 325 78.5
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 1.5e-141 506.5 329 78.1
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 2.0e-141 506.1 325 78.8
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 7.5e-141 504.2 325 78.5
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 7.5e-141 504.2 325 78.5
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 7.5e-141 504.2 326 77.9
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 9.7e-141 503.8 327 77.4
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 9.7e-141 503.8 327 77.7
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 1.3e-140 503.4 326 77.0
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.7e-140 503.1 327 77.7
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.7e-140 503.1 327 78.0
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 1.7e-140 503.1 327 77.7
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 2.2e-140 502.7 325 78.2
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 2.8e-140 502.3 327 78.0
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 3.7e-140 501.9 325 77.8
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 4.8e-140 501.5 325 77.2
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 8.3e-140 500.7 330 77.9
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 5.3e-139 498.0 327 77.1
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 5.3e-139 498.0 325 77.8
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 4.5e-138 495.0 325 76.6
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 7.7e-138 494.2 328 77.4
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 1.0e-137 493.8 325 76.9
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 1.7e-137 493.0 332 74.7
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 2.2e-137 492.7 325 75.7
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 5.0e-137 491.5 326 74.8
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 1.1e-136 490.3 293 82.9
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 4.2e-136 488.4 326 75.8
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 8.0e-135 484.2 328 74.7
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 1.8e-134 483.0 322 78.3
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 3.0e-134 482.3 326 74.5
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 1.7e-132 476.5 328 74.7
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 2.4e-131 472.6 326 73.0
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 3.1e-131 472.2 326 72.7
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 1.6e-130 469.9 326 72.1
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 7.7e-130 467.6 326 73.6
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 1.0e-129 467.2 329 71.4
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.3e-129 466.8 326 73.3
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.7e-129 466.5 323 73.4
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 5.0e-129 464.9 322 75.8
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 1.1e-128 463.8 329 70.8
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 3.3e-128 462.2 326 72.1
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 3.3e-128 462.2 327 73.1
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 9.5e-128 460.7 326 73.6
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 3.6e-127 458.8 326 72.4
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 6.1e-127 458.0 326 72.7
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 8.0e-127 457.6 326 71.2
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 8.0e-127 457.6 322 73.3
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 8.0e-127 457.6 357 66.4
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 1.4e-126 456.8 322 73.0
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.3e-126 456.1 326 70.9
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 4.0e-126 455.3 325 71.7
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 5.2e-126 454.9 326 72.4
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 8.9e-126 454.1 322 73.9
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 8.9e-126 454.1 326 72.4
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 1.2e-125 453.8 326 72.4
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.5e-125 453.4 322 73.9
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 4.4e-125 451.8 326 72.4
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 4.4e-125 451.8 326 69.3
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 7.5e-125 451.1 363 67.2
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 3.7e-124 448.7 286 78.3
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 1.2e-122 443.7 326 68.4
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 1.6e-122 443.4 322 71.7
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 2.0e-122 443.0 323 71.8
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 1.0e-121 440.7 323 69.3
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 3.6e-119 432.2 326 68.4
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 8.9e-118 427.6 327 65.7
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 8.9e-118 427.6 327 66.4
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.6e-117 426.0 318 70.4
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 3.4e-117 425.6 325 69.5
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 4.4e-117 425.2 326 66.0
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 1.3e-116 423.7 323 69.3
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 2.2e-116 422.9 326 64.7
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 2.2e-116 422.9 328 65.9
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 4.9e-116 421.8 327 65.4
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 4.9e-116 421.8 326 68.4
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 8.3e-116 421.0 328 65.2
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.4e-115 419.5 326 64.4
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 3.2e-115 419.1 328 64.9
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 7.0e-115 417.9 322 66.8
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 9.2e-115 417.5 327 64.5
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 9.2e-115 417.5 326 64.7
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 1.2e-114 417.2 322 66.5
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 3.5e-114 415.6 336 63.4
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 7.8e-114 414.5 326 67.5
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 1.0e-113 414.1 291 73.5
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 2.3e-113 412.9 327 63.9
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 4.3e-112 408.7 325 65.2
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 7.5e-109 397.9 327 66.1
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 3.7e-108 395.6 324 63.0
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 5.6e-104 381.7 322 60.2
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.4e-99 367.1 325 63.4
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 3.9e-97 359.0 322 61.8
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 1.4e-94 350.5 321 57.3
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 2.4e-91 339.7 324 57.4
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 1.2e-90 337.4 276 65.9
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 1.7e-89 333.6 320 55.3
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 1.1e-86 324.3 338 52.1
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.5e-85 320.5 320 54.7
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 2.0e-85 320.1 339 52.8
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 1.9e-83 313.5 328 51.8
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 1.0e-81 307.8 176 86.4
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 3.0e-73 279.6 327 52.6
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 5.1e-73 278.9 317 46.7
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 5.6e-72 275.4 184 74.5
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 1.4e-70 270.8 196 70.4
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 4.6e-66 255.8 275 46.5
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.5e-64 250.8 196 67.9
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.9e-59 233.8 200 60.5
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 5.5e-59 232.3 142 80.3
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.6e-58 230.7 329 43.5
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 1.3e-57 227.6 270 49.6
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 6.7e-57 225.3 303 42.2
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 3.7e-55 219.5 158 69.0
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 8.2e-55 218.4 131 84.0
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 6.9e-54 215.3 182 60.4
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 7.7e-53 211.8 133 78.9
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 7.9e-50 201.8 116 86.2
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 2.5e-48 196.8 151 67.5
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 4.3e-48 196.1 131 76.3
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 6.9e-46 188.7 145 60.7
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 5.0e-44 182.6 128 75.0
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 1.2e-42 177.9 269 41.3
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 1.0e-41 174.9 112 72.3
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 3.0e-41 173.3 180 52.8
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 2.8e-39 166.8 139 60.4
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 5.3e-38 162.5 263 35.7
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 5.3e-38 162.5 180 47.2
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.1e-34 150.6 153 52.9
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.3e-32 143.3 147 51.7
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 5.7e-32 142.5 196 41.8
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 6.3e-31 139.0 194 45.9
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 1.1e-30 138.3 138 52.9
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 2.6e-29 133.7 82 76.8
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 2.9e-28 130.2 176 43.8
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 8.5e-28 128.6 126 50.0
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 5.5e-27 125.9 127 48.8
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.0e-25 121.7 117 54.7
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 3.4e-24 116.7 68 86.8
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 6.8e-17 92.4 59 79.7
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 8.8e-17 92.0 75 58.7
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 8.8e-17 92.0 75 58.7
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 3.4e-16 90.1 75 57.3
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 5.0e-12 76.3 123 42.3
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 2.3e-09 67.4 59 54.2
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 8.9e-09 65.5 58 55.2


User provided reference genes

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