Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 2219.1 1195 100.0
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1916.7 1197 88.1
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1899.0 1195 85.7
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1888.6 1198 84.1
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1871.3 1198 85.1
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1870.1 1194 85.3
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1867.0 1196 85.0
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1866.7 1196 84.1
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1864.7 1199 83.9
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1857.0 1198 85.1
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1855.9 1198 84.8
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1853.2 1198 84.5
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1847.4 1197 84.4
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1845.9 1198 84.0
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1831.2 1205 83.6
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1825.1 1197 83.2
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1822.8 1201 83.4
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1820.8 1201 81.8
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1820.4 1259 80.2
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1818.9 1200 81.5
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1817.4 1205 83.1
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1810.8 1250 80.8
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1805.4 1203 82.8
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1802.3 1178 82.9
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1800.8 1199 81.5
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1800.4 1197 81.0
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1791.9 1198 82.9
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1791.5 1199 81.2
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1789.6 1205 81.9
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1788.1 1202 81.4
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1786.2 1203 81.0
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1783.1 1198 81.3
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1780.4 1214 81.1
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1776.5 1199 79.1
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1772.7 1197 80.7
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1763.8 1205 79.6
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1762.7 1195 80.3
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1760.7 1202 79.8
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1758.4 1207 78.7
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1756.1 1138 84.5
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1747.3 1232 77.7
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1745.7 1174 81.3
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1739.9 1195 80.6
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1739.2 1199 78.7
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1739.2 1205 77.9
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1738.4 1200 79.8
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1738.0 1212 78.1
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1738.0 1199 79.9
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1737.6 1196 78.8
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1734.5 1201 78.3
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1732.6 1206 76.5
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1731.8 1400 72.4
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1729.1 1218 78.8
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1728.0 1218 77.0
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1706.0 1182 79.3
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1705.3 1228 78.0
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1705.3 1174 80.2
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1704.9 1201 78.4
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1695.2 1199 75.6
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1687.9 1229 75.2
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1686.8 1204 77.8
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1682.9 1122 81.1
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1676.0 1069 85.9
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1667.9 1200 74.8
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1661.4 1197 77.8
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1661.0 1198 75.8
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1655.6 1187 77.1
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1652.9 1200 75.2
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1652.9 1166 77.9
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1642.9 1218 74.7
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1639.0 1198 74.0
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1627.8 1170 76.9
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1614.0 1197 74.4
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1612.4 1177 75.5
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1609.3 1197 73.8
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1605.1 1197 71.6
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1602.0 930 92.6
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1592.8 1196 72.2
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1590.1 1197 71.0
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1590.1 1197 71.0
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1588.9 1196 73.7
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1588.2 1205 71.9
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1586.6 1214 72.8
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1583.2 1197 72.5
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1577.8 1199 72.9
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1574.3 1202 72.8
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1574.3 1171 74.0
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1573.1 1204 72.5
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1570.8 1196 70.6
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1570.8 1206 72.5
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1570.8 1210 72.1
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1562.7 1306 67.8
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1540.0 1197 72.8
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1514.2 1219 69.8
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1475.7 1187 70.7
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1470.3 1192 66.8
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1465.7 1209 67.8
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1439.5 879 84.0
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1426.4 1260 65.1
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1409.8 1198 65.1
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1387.5 873 83.3
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1381.7 1225 64.3
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1355.1 1186 64.5
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1251.1 814 82.3
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1232.2 840 78.0
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1163.7 760 82.0
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1156.0 1220 53.9
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1117.8 788 74.0
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1115.1 887 73.6
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 7.1e-306 1054.3 971 65.3
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 1.3e-294 1016.9 667 79.8
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 3.4e-284 982.2 939 64.5
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 6.4e-283 978.0 807 69.3
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.1e-213 748.0 608 68.3
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 2.5e-194 683.7 531 67.2
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 2.6e-175 620.5 478 71.5
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 5.8e-175 619.4 957 41.3
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.2e-164 585.1 377 80.9
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 1.7e-158 564.7 443 71.8
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.9e-155 553.5 294 91.8
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 4.7e-140 503.4 365 80.0
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 3.5e-127 460.7 376 70.7
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 4.2e-125 453.8 1179 33.1
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 2.7e-124 451.1 854 37.7
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 7.0e-120 436.4 237 88.2
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 8.0e-116 422.9 313 72.2
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 5.0e-102 377.1 573 42.1
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 1.1e-91 342.8 1280 27.5
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 8.9e-91 339.7 215 80.5
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.4e-90 337.4 215 80.0
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 6.4e-89 333.6 212 77.8
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 1.6e-87 328.9 181 86.7
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 1.6e-87 328.9 181 86.7
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 8.6e-86 323.2 174 89.1
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 5.1e-78 297.4 340 57.6
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 8.6e-78 296.6 224 68.8
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 1.9e-77 295.4 385 55.8
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 1.2e-76 292.7 363 58.4
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 1.9e-69 268.9 409 43.0
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.5e-66 259.2 339 52.5
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 3.6e-60 238.0 137 88.3
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.8e-59 235.7 199 71.4
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 5.8e-58 230.7 164 72.0
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 1.7e-57 229.2 231 61.5
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 6.0e-55 220.7 155 73.5
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.1e-53 216.5 138 77.5
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 3.3e-53 214.9 315 49.5
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 3.1e-51 208.4 329 40.7
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 2.4e-43 182.2 212 53.3
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 1.7e-41 176.0 120 70.0
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 7.9e-39 167.2 96 85.4
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.6e-36 159.5 156 59.6
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 3.7e-36 158.3 222 46.4
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 4.5e-34 151.4 113 75.2
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.7e-33 149.4 101 73.3
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 2.3e-30 139.0 119 71.4
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 6.7e-30 137.5 77 84.4
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 4.3e-29 134.8 134 58.2
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.3e-25 123.2 73 80.8
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 1.7e-25 122.9 87 66.7
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 2.7e-23 115.5 95 71.6
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 2.3e-22 112.5 65 89.2
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 5.1e-22 111.3 112 58.0
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 5.1e-22 111.3 72 77.8
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 2.0e-21 109.4 83 63.9
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 7.0e-19 100.9 77 67.5
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 1.2e-18 100.1 59 88.1
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 7.7e-18 97.4 68 66.2
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 1.3e-17 96.7 116 51.7
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 2.9e-17 95.5 57 75.4
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 3.8e-17 95.1 56 75.0
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 1.3e-12 80.1 56 66.1
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 1.3e-12 80.1 46 87.0
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 2.2e-09 69.3 113 40.7
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 1.9e-08 66.2 149 37.6
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 5.5e-08 64.7 45 64.4
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 2.1e-07 62.8 47 55.3
Hma1.2p1_3877F.1_g337870 Hydrangea macrophylla HOM05D003924 ORTHO05D228195 3.0e-06 58.9 53 58.5
Lsat_1_v5_gn_8_86941 Lactuca sativa HOM05D002786 ORTHO05D003493 5.2e-06 58.2 96 42.7
BcaC02g12045 Brassica carinata HOM05D048261 ORTHO05D039052 6.8e-06 57.8 49 67.3


User provided reference genes

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