Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa000824 Carpinus fangiana HOM05D005565 ORTHO05D006950 9.5e-196 686.8 384 100.0
CiPaw.10G085900 Carya illinoinensis HOM05D005565 ORTHO05D006950 1.7e-160 569.7 389 84.8
QL05p061027 Quercus lobata HOM05D005565 ORTHO05D006950 1.4e-159 566.6 386 84.7
Prupe.4G089800 Prunus persica HOM05D005565 ORTHO05D006950 3.3e-156 555.4 391 82.6
MD05G1274000 Malus domestica HOM05D005565 ORTHO05D006950 6.5e-152 541.2 388 81.7
CsaV3_6G052300 Cucumis sativus L. HOM05D005565 ORTHO05D006950 2.7e-150 535.8 384 80.7
RcHm_v2.0_Chr5g0015891 Rosa chinensis HOM05D005565 ORTHO05D006950 1.0e-149 533.9 395 80.5
FAN11G0475 Fragaria x ananassa HOM05D005565 ORTHO05D006950 1.1e-148 530.4 395 79.7
FAN21G3355 Fragaria x ananassa HOM05D005565 ORTHO05D006950 1.1e-148 530.4 393 79.6
FvH4_3g10030 Fragaria vesca HOM05D005565 ORTHO05D006950 7.4e-148 527.7 395 79.5
Dinv06439 Davidia involucrata HOM05D005565 ORTHO05D006950 2.2e-147 526.2 383 80.4
FAN16G1178 Fragaria x ananassa HOM05D005565 ORTHO05D006950 6.3e-147 524.6 399 78.9
VMungo0251G3128 Vigna mungo HOM05D005565 ORTHO05D006950 6.3e-147 524.6 386 78.5
Medtr4g083380 Medicago truncatula HOM05D005565 ORTHO05D006950 4.1e-146 521.9 402 79.1
MELO3C007079.2 Cucumis melo HOM05D005565 ORTHO05D006950 3.4e-145 518.8 404 76.7
Thecc.06G001100 Theobroma cacao HOM05D005565 ORTHO05D006950 1.7e-144 516.5 386 77.7
TAR626G1362 Trochodendron aralioides HOM05D005565 ORTHO05D006950 3.8e-144 515.4 399 78.4
ClCG01G025100 Citrullus lanatus HOM05D005565 ORTHO05D006950 5.5e-143 511.5 384 78.4
Cpa.g.sc17.91 Carica papaya HOM05D005565 ORTHO05D006950 9.4e-143 510.8 392 78.1
Duzib192G0128 Durio zibethinus HOM05D005565 ORTHO05D006950 1.2e-142 510.4 393 77.1
Aqoxy1G01543 Aquilegia oxysepala HOM05D005565 ORTHO05D006950 2.7e-142 509.2 401 75.1
THA.LOC104812687 Tarenaya hassleriana HOM05D005565 ORTHO05D006950 6.1e-142 508.1 385 79.5
CANSAT35G0106 Cannabis sativa HOM05D005565 ORTHO05D006950 7.9e-142 507.7 388 77.6
Phvul.002G100900 Phaseolus vulgaris HOM05D005565 ORTHO05D006950 1.0e-141 507.3 386 76.4
Glyma.07G224200 Glycine max HOM05D005565 ORTHO05D006950 2.3e-141 506.1 395 78.5
TWI53G0754 Tripterygium wilfordii HOM05D005565 ORTHO05D006950 2.3e-141 506.1 390 78.2
Gorai.011G004100 Gossypium raimondii HOM05D005565 ORTHO05D006950 2.2e-139 499.6 388 77.1
CARHR029890 Cardamine hirsuta HOM05D005565 ORTHO05D006950 1.4e-138 496.9 384 75.8
CANSAT35G0536 Cannabis sativa HOM05D005565 ORTHO05D006950 1.8e-138 496.5 386 75.9
HPP92_019891 Vanilla planifolia HOM05D005565 ORTHO05D006950 4.1e-138 495.4 386 75.9
Aa31LG6G11740 Aethionema arabicum HOM05D005565 ORTHO05D006950 6.9e-138 494.6 385 78.2
Gohir.A10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 9.1e-138 494.2 392 76.0
MD10G1253700 Malus domestica HOM05D005565 ORTHO05D006950 3.4e-137 492.3 388 75.8
Psat7g132960 Pisum sativum HOM05D005565 ORTHO05D006950 5.9e-137 491.5 456 68.0
Actinidia13472 Actinidia chinensis HOM05D005565 ORTHO05D006950 1.0e-136 490.7 388 74.7
Sed0002078 Sechium edule HOM05D005565 ORTHO05D006950 1.3e-136 490.3 384 74.5
Nn3g20239 Nelumbo nucifera HOM05D005565 ORTHO05D006950 1.7e-136 490.0 401 74.8
Lj4g0020694 Lotus japonicus HOM05D005565 ORTHO05D006950 2.2e-136 489.6 398 74.4
Atru.chr10.872 Acer truncatum HOM05D005565 ORTHO05D006950 4.2e-135 485.3 391 76.2
Sp1g26320 Schrenkiella parvula HOM05D005565 ORTHO05D006950 4.2e-135 485.3 386 76.2
Lj1A1162G46 Lonicera japonica HOM05D005565 ORTHO05D006950 7.2e-135 484.6 391 76.2
Glyma.20G024100 Glycine max HOM05D005565 ORTHO05D006950 2.7e-134 482.6 400 74.2
AT1G30480 Arabidopsis thaliana HOM05D005565 ORTHO05D006950 3.6e-134 482.3 393 75.1
Ca_18788_v3 Cicer arietinum L. HOM05D005565 ORTHO05D006950 6.1e-134 481.5 395 67.8
arahy.Tifrunner.gnm1.ann1.V3UUHR Arachis hypogaea HOM05D005565 ORTHO05D006950 3.0e-133 479.2 400 73.0
arahy.Tifrunner.gnm1.ann1.59WFQY Arachis hypogaea HOM05D005565 ORTHO05D006950 3.9e-133 478.8 400 73.2
SHI20681 Sapria himalayana HOM05D005565 ORTHO05D006950 2.6e-132 476.1 384 73.2
Carub.0001s2870 Capsella rubella HOM05D005565 ORTHO05D006950 6.3e-131 471.5 387 73.9
COL.COLO4_26828 Corchorus olitorius HOM05D005565 ORTHO05D006950 3.1e-130 469.2 386 68.7
Thhalv10007861m.g Eutrema salsugineum HOM05D005565 ORTHO05D006950 3.1e-130 469.2 393 75.3
MBI10_g00722_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 5.3e-130 468.4 389 74.8
Sabra11G0084800 Salix brachista HOM05D005565 ORTHO05D006950 7.0e-130 468.0 415 70.1
Manes.06G055100 Manihot esculenta HOM05D005565 ORTHO05D006950 1.6e-129 466.8 384 74.2
Sabra11G0091000 Salix brachista HOM05D005565 ORTHO05D006950 2.0e-129 466.5 415 69.9
CSS0026797 Camellia sinensis var. sinensis HOM05D005565 ORTHO05D006950 2.6e-129 466.1 396 71.0
Sc17g0004650 Simmondsia chinensis HOM05D005565 ORTHO05D006950 3.5e-129 465.7 405 72.1
PSO541G0264 Papaver somniferum HOM05D005565 ORTHO05D006950 1.3e-128 463.8 406 72.4
Haze_05807 Corylus avellana HOM05D005565 ORTHO05D006950 2.9e-128 462.6 292 94.2
Potri.001G372600 Populus trichocarpa HOM05D005565 ORTHO05D006950 2.9e-128 462.6 388 74.7
PGR083G1318 Punica granatum HOM05D005565 ORTHO05D006950 5.0e-128 461.8 392 74.7
C03p76800 Brassica napus HOM05D005565 ORTHO05D006950 2.5e-127 459.5 384 72.4
PSO675G3222 Papaver somniferum HOM05D005565 ORTHO05D006950 2.1e-126 456.4 406 70.9
Zm00001eb315350 Zea mays HOM05D005565 ORTHO05D006950 3.6e-126 455.7 389 69.7
Eucgr.D00186 Eucalyptus grandis HOM05D005565 ORTHO05D006950 1.4e-125 453.8 395 69.6
Potri.011G098100 Populus trichocarpa HOM05D005565 ORTHO05D006950 6.7e-125 451.4 339 78.8
Sabra16G0245100 Salix brachista HOM05D005565 ORTHO05D006950 8.8e-125 451.1 447 65.1
Manes.14G122600 Manihot esculenta HOM05D005565 ORTHO05D006950 3.7e-123 445.7 378 69.6
Zm00001eb376390 Zea mays HOM05D005565 ORTHO05D006950 1.4e-122 443.7 390 67.7
A08p24410 Brassica napus HOM05D005565 ORTHO05D006950 5.3e-122 441.8 383 70.0
DCAR_027864 Daucus carota HOM05D005565 ORTHO05D006950 3.8e-120 435.6 396 69.4
vmacro03395 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 8.5e-120 434.5 396 69.9
Rhsim13G0120300 Rhododendron simsii HOM05D005565 ORTHO05D006950 1.5e-119 433.7 389 70.7
Lsat_1_v5_gn_1_117781 Lactuca sativa HOM05D005565 ORTHO05D006950 3.2e-119 432.6 402 68.2
Hma1.2p1_0333F.1_g128300 Hydrangea macrophylla HOM05D005565 ORTHO05D006950 1.6e-118 430.3 406 67.7
SEGI_17605 Sequoiadendron giganteum HOM05D005565 ORTHO05D006950 2.2e-115 419.9 412 60.9
AL1G44510 Arabidopsis lyrata HOM05D005565 ORTHO05D006950 4.8e-115 418.7 389 67.4
EL10Ac8g19576 Beta vulgaris HOM05D005565 ORTHO05D006950 8.3e-115 417.9 405 66.7
BolC3t19934H Brassica oleracea HOM05D005565 ORTHO05D006950 1.0e-112 411.0 383 67.4
BcaNung05265 Brassica carinata HOM05D005565 ORTHO05D006950 2.9e-112 409.5 360 65.8
BcaNung05264 Brassica carinata HOM05D005565 ORTHO05D006950 1.5e-111 407.1 383 66.8
Cc09_g08070 Coffea canephora HOM05D005565 ORTHO05D006950 1.9e-111 406.8 400 66.0
A09p35980 Brassica napus HOM05D005565 ORTHO05D006950 2.1e-110 403.3 382 67.0
BraA09t39122Z Brassica rapa HOM05D005565 ORTHO05D006950 2.1e-110 403.3 382 67.0
Oeu041100.1 Olea europaea HOM05D005565 ORTHO05D006950 6.1e-110 401.7 396 66.4
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 1.7e-107 393.7 392 63.3
ATR0165G027 Amborella trichopoda HOM05D005565 ORTHO05D006950 1.8e-106 390.2 409 63.8
Mapoly0023s0048 Marchantia polymorpha HOM05D005565 ORTHO05D006950 7.0e-106 388.3 449 58.6
CAN.G954.26 Capsicum annuum HOM05D005565 ORTHO05D006950 1.2e-105 387.5 394 65.2
Os01g0526100 Oryza sativa ssp. japonica HOM05D005565 ORTHO05D006950 1.3e-104 384.0 295 72.9
HanXRQChr01g0003371 Helianthus annuus HOM05D005565 ORTHO05D006950 3.8e-104 382.5 406 59.9
Sopen02g018950 Solanum pennellii HOM05D005565 ORTHO05D006950 3.3e-103 379.4 405 62.5
MSTRG.14795 Avicennia marina HOM05D005565 ORTHO05D006950 5.6e-103 378.6 399 64.4
Solyc02g069790.3 Solanum lycopersicum HOM05D005565 ORTHO05D006950 7.3e-103 378.3 407 61.9
PGSC0003DMG400021191 Solanum tuberosum HOM05D005565 ORTHO05D006950 7.3e-103 378.3 401 62.3
ECA240G3173 Erigeron canadensis HOM05D005565 ORTHO05D006950 2.2e-99 366.7 392 62.0
Pp3c2_18610 Physcomitrium patens HOM05D005565 ORTHO05D006950 5.4e-98 362.1 430 57.7
Oeu015183.1 Olea europaea HOM05D005565 ORTHO05D006950 9.2e-98 361.3 400 61.0
SGA_v2.0_scaffold1G00240 Striga asiatica HOM05D005565 ORTHO05D006950 2.0e-97 360.1 395 61.3
Migut.H01333 Erythranthe guttata HOM05D005565 ORTHO05D006950 5.0e-96 355.5 386 60.9
AUR62042519 Chenopodium quinoa HOM05D005565 ORTHO05D006950 3.3e-95 352.8 395 54.9
Peaxi162Scf00670g00348 Petunia axillaris HOM05D005565 ORTHO05D006950 5.6e-95 352.1 401 59.6
SGA_v2.0_scaffold223G42860 Striga asiatica HOM05D005565 ORTHO05D006950 1.4e-93 347.4 392 59.2
Gohir.D10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 3.1e-85 319.7 290 73.8
FAN25G2018 Fragaria x ananassa HOM05D005565 ORTHO05D006950 6.8e-85 318.5 187 86.6
AagrBONN_evm.TU.Sc2ySwM_228.4814 Anthoceros agrestis HOM05D005565 ORTHO05D006950 2.0e-84 317.0 423 48.0
GSVIVG01021628001 Vitis vinifera HOM05D005565 ORTHO05D006950 5.8e-84 315.5 171 91.8
BraA08t34396Z Brassica rapa HOM05D005565 ORTHO05D006950 5.4e-82 308.9 381 57.0
CBR_g29718 Chara braunii HOM05D005565 ORTHO05D006950 1.7e-80 303.9 470 50.2
BcaB07g32683 Brassica carinata HOM05D005565 ORTHO05D006950 3.0e-80 303.1 384 51.8
Nitab4.5_0004596g0030 Nicotiana tabacum HOM05D005565 ORTHO05D006950 3.1e-77 293.1 206 73.3
BcaB07g32657 Brassica carinata HOM05D005565 ORTHO05D006950 3.4e-76 289.7 171 84.8
C05p29480 Brassica napus HOM05D005565 ORTHO05D006950 3.4e-76 289.7 171 84.8
BolC5t31678H Brassica oleracea HOM05D005565 ORTHO05D006950 3.4e-76 289.7 171 84.8
MBI18_g10581_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 1.6e-73 280.8 293 60.1
Lalb_Chr05g0219831 Lupinus albus HOM05D005565 ORTHO05D006950 3.6e-70 269.6 387 46.5
CDE10G1222 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 8.4e-67 258.5 148 85.1
Dinv23083 Davidia involucrata HOM05D005565 ORTHO05D006950 4.2e-66 256.1 290 65.2
SMO351G0200 Selaginella moellendorffii HOM05D005565 ORTHO05D006950 4.2e-66 256.1 308 53.6
vmacro03441 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 5.4e-66 255.8 169 81.7
CDE10G1151 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 1.0e-64 251.5 390 49.5
BcaC01g00198 Brassica carinata HOM05D005565 ORTHO05D006950 6.9e-61 238.8 143 82.5
Haze_05809 Corylus avellana HOM05D005565 ORTHO05D006950 2.2e-51 207.2 130 80.8
Hma1.2p1_0333F.1_g128290 Hydrangea macrophylla HOM05D005565 ORTHO05D006950 8.4e-43 178.7 99 83.8
MCO12G324 Micromonas commoda HOM05D005565 ORTHO05D006950 1.1e-42 178.3 405 37.5
AUR62027340 Chenopodium quinoa HOM05D005565 ORTHO05D006950 9.3e-42 175.3 270 47.0
BcaB07g32658 Brassica carinata HOM05D005565 ORTHO05D006950 3.5e-41 173.3 97 81.4
Cre11.g467591 Chlamydomonas reinhardtii HOM05D005565 ORTHO05D006950 3.5e-41 173.3 415 38.6
Haze_26712 Corylus avellana HOM05D005565 ORTHO05D006950 2.3e-40 170.6 175 52.6
TPR.G34068 Trifolium pratense HOM05D005565 ORTHO05D006950 3.0e-40 170.2 182 70.9
Nitab4.5_0002719g0090 Nicotiana tabacum HOM05D005565 ORTHO05D006950 7.4e-39 165.6 125 64.8
C07p15100 Brassica napus HOM05D005565 ORTHO05D006950 5.9e-36 156.0 101 75.2
PRCOL_00005056 Prasinoderma coloniale HOM05D005565 ORTHO05D006950 5.7e-23 112.8 196 40.3
BcaC01g00197 Brassica carinata HOM05D005565 ORTHO05D006950 5.9e-20 102.8 215 47.9
CDE10G0349 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 5.9e-20 102.8 71 78.9
CBR_g23080 Chara braunii HOM05D005565 ORTHO05D006950 6.5e-19 99.4 105 45.7
Ciclev10018985m.g Citrus clementina HOM05D000565 ORTHO05D003973 4.7e-17 93.2 122 50.8
SGA_v2.0_scaffold22G09881 Striga asiatica HOM05D005565 ORTHO05D006950 4.7e-17 93.2 97 47.4
SGA_v2.0_scaffold273G46430 Striga asiatica HOM05D005565 ORTHO05D402892 1.7e-11 74.7 139 42.4
SGA_v2.0_scaffold74G24562 Striga asiatica HOM05D005565 ORTHO05D401758 5.0e-11 73.2 138 42.0
CBR_g28574 Chara braunii HOM05D000409 ORTHO05D001956 2.1e-09 67.8 106 37.7
CBR_g28571 Chara braunii HOM05D001563 ORTHO05D001956 4.7e-09 66.6 102 36.3
CBR_g28575 Chara braunii HOM05D001563 ORTHO05D001956 1.0e-08 65.5 104 35.6
SEGI_22204 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 1.8e-08 64.7 103 35.0
Solyc12g008750.3 Solanum lycopersicum HOM05D001563 ORTHO05D001956 3.0e-08 63.9 103 31.1
Sopen12g003680 Solanum pennellii HOM05D001563 ORTHO05D001956 3.0e-08 63.9 103 31.1
SMO348G0102 Selaginella moellendorffii HOM05D001563 ORTHO05D001956 4.0e-08 63.5 109 33.9
Oeu007445.5 Olea europaea HOM05D001563 ORTHO05D001956 5.2e-08 63.2 100 36.0
PGSC0003DMG400000344 Solanum tuberosum HOM05D001563 ORTHO05D001956 5.2e-08 63.2 103 31.1
HanXRQChr09g0262121 Helianthus annuus HOM05D001563 ORTHO05D001956 8.8e-08 62.4 101 35.6
Nitab4.5_0005471g0020 Nicotiana tabacum HOM05D001563 ORTHO05D001956 1.2e-07 62.0 103 31.1
Mapoly0038s0101 Marchantia polymorpha HOM05D001563 ORTHO05D001956 1.5e-07 61.6 102 31.4
Nitab4.5_0000540g0190 Nicotiana tabacum HOM05D001563 ORTHO05D001956 1.5e-07 61.6 103 31.1
Ca_19741_v3 Cicer arietinum L. HOM05D001563 ORTHO05D001956 2.6e-07 60.8 100 33.0
SEGI_35596 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 2.6e-07 60.8 104 33.7
MCO15G197 Micromonas commoda HOM05D002097 ORTHO05D004937 4.4e-07 60.1 101 33.7
Dinv26814 Davidia involucrata HOM05D001563 ORTHO05D001956 5.7e-07 59.7 100 34.0
AagrBONN_evm.TU.Sc2ySwM_117.747 Anthoceros agrestis HOM05D001563 ORTHO05D001956 7.5e-07 59.3 104 31.7
arahy.Tifrunner.gnm1.ann1.D340KN Arachis hypogaea HOM05D002097 ORTHO05D002248 7.5e-07 59.3 100 29.0
MELO3C013338.2 Cucumis melo HOM05D002097 ORTHO05D002248 9.7e-07 58.9 95 31.6
Lsat_1_v5_gn_4_153381 Lactuca sativa HOM05D001563 ORTHO05D012319 9.7e-07 58.9 101 30.7
Os11g0636900 Oryza sativa ssp. japonica HOM05D001563 ORTHO05D001956 9.7e-07 58.9 143 25.9
CDE04G0453 Ceratophyllum demersum HOM05D001563 ORTHO05D001956 1.3e-06 58.5 102 30.4
SMO201G0011 Selaginella moellendorffii HOM05D001563 ORTHO05D001956 1.3e-06 58.5 110 35.5
SGA_v2.0_scaffold2G01114 Striga asiatica HOM05D001563 ORTHO05D001956 1.3e-06 58.5 100 30.0
MSTRG.19982 Avicennia marina HOM05D002097 ORTHO05D002248 1.7e-06 58.2 100 29.0
Dinv20611 Davidia involucrata HOM05D001563 ORTHO05D001956 1.7e-06 58.2 102 29.4
ECA232G1424 Erigeron canadensis HOM05D001563 ORTHO05D001956 1.7e-06 58.2 95 32.6
HanXRQChr11g0324861 Helianthus annuus HOM05D001563 ORTHO05D001956 1.7e-06 58.2 98 33.7
MD05G1123800 Malus domestica HOM05D002097 ORTHO05D002248 1.7e-06 58.2 98 31.6
Lalb_Chr15g0080491 Lupinus albus HOM05D001563 ORTHO05D001956 2.8e-06 57.4 100 31.0
Nn5g29539 Nelumbo nucifera HOM05D001563 ORTHO05D001956 2.8e-06 57.4 102 32.4
Zm00001eb222690 Zea mays HOM05D002097 ORTHO05D002248 2.8e-06 57.4 98 30.6
arahy.Tifrunner.gnm1.ann1.272FN3 Arachis hypogaea HOM05D001563 ORTHO05D001956 3.7e-06 57.0 101 32.7
arahy.Tifrunner.gnm1.ann1.Q6L7I5 Arachis hypogaea HOM05D002097 ORTHO05D002248 3.7e-06 57.0 106 27.4
GSVIVG01023998001 Vitis vinifera HOM05D002097 ORTHO05D002248 3.7e-06 57.0 100 30.0
ClCG02G003960 Citrullus lanatus HOM05D002097 ORTHO05D002248 4.8e-06 56.6 95 30.5
Nitab4.5_0004596g0040 Nicotiana tabacum HOM05D005565 ORTHO05D006950 4.8e-06 56.6 58 60.3
SGA_v2.0_scaffold221G42757 Striga asiatica HOM05D001563 ORTHO05D001956 4.8e-06 56.6 100 29.0
TAR628G1301 Trochodendron aralioides HOM05D001563 ORTHO05D001956 4.8e-06 56.6 103 35.9
CDE06G2406 Ceratophyllum demersum HOM05D001563 ORTHO05D001956 6.3e-06 56.2 102 28.4
vmacro02285 Vaccinium macrocarpon HOM05D002097 ORTHO05D002248 6.3e-06 56.2 100 30.0
EL10Ac6g14918 Beta vulgaris HOM05D001563 ORTHO05D001956 8.2e-06 55.8 103 28.2
Manes.04G071600 Manihot esculenta HOM05D002097 ORTHO05D002248 8.2e-06 55.8 128 25.8
Phvul.005G001300 Phaseolus vulgaris HOM05D001563 ORTHO05D001956 8.2e-06 55.8 100 30.0
HPP92_001601 Vanilla planifolia HOM05D001563 ORTHO05D001956 8.2e-06 55.8 143 29.4


User provided reference genes

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