Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 2213.3 1192 100.0
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1783.1 1212 79.9
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1778.8 1212 79.9
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1774.6 1202 80.0
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1743.4 1210 77.5
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1742.2 1201 78.3
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1739.5 1200 78.8
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1724.5 1201 78.4
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1721.4 1212 76.7
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1714.5 1255 74.4
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1713.7 1202 77.9
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1709.5 1231 77.1
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1707.6 1214 76.6
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1704.1 1205 77.8
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1701.4 1142 80.9
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1694.5 1205 76.1
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1694.5 1203 77.5
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1693.3 1205 77.5
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1691.8 1202 77.1
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1690.2 1200 76.3
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1688.7 1216 75.5
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1687.9 1204 75.8
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1686.8 1202 77.0
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1686.8 1173 78.8
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1681.0 1203 77.4
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1676.8 1208 75.4
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1675.6 1212 75.4
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1672.9 1222 75.5
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1671.8 1266 73.7
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1669.4 1202 75.5
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1665.2 1225 73.6
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1662.5 1208 76.3
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1662.5 1208 76.7
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1661.7 1201 75.4
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1661.0 1174 77.3
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1657.1 1217 74.5
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1657.1 1199 75.6
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1652.9 1263 72.1
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1652.1 1216 76.5
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1649.4 1201 73.7
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1647.9 1183 77.5
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1643.2 1201 74.9
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1642.9 1211 73.7
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1638.2 1217 73.5
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1637.5 1213 73.5
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1637.5 1217 75.3
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1634.4 1202 75.7
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1631.7 1190 74.9
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1629.4 1220 73.0
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1629.0 1214 75.8
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1626.7 1206 74.8
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1626.3 1213 73.0
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1618.2 1217 73.4
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1615.1 1210 72.7
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1611.7 1212 73.0
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1609.7 1207 73.7
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1605.5 1205 74.0
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1604.7 1212 72.4
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1604.7 1209 72.8
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1602.8 1202 73.4
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1598.6 1206 72.2
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1585.5 1225 73.1
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1577.8 1173 74.4
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1574.7 1200 73.2
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1570.4 1210 71.2
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1547.3 1206 71.2
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1545.8 1207 71.4
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1544.6 1199 70.7
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1543.5 1232 69.2
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1538.5 1192 71.6
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1529.6 1196 70.5
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1527.3 1234 70.0
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1526.1 1203 69.2
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1526.1 1203 69.2
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1525.8 1126 73.8
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1525.4 1406 64.2
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1523.8 1084 77.1
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1520.8 1204 69.9
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1519.2 1306 66.9
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1519.2 1203 68.9
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1505.0 1203 68.4
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1501.5 1201 69.4
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1495.3 1181 70.2
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1494.2 1209 68.2
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1484.5 1204 70.3
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1483.0 1210 68.6
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1471.8 1213 68.3
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1468.4 1217 68.0
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1468.4 1206 68.0
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1467.6 1200 68.2
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1466.8 1213 67.9
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1465.7 1203 68.2
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1465.3 1206 67.7
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1440.6 1176 69.8
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1421.0 1187 66.7
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1416.4 1200 65.6
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1402.9 1206 65.2
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1380.2 872 83.7
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1373.6 1264 62.6
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1359.7 1233 63.6
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1349.0 878 79.3
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1347.8 930 77.6
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1336.6 1210 63.1
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1192.6 848 74.1
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1187.2 790 80.1
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1160.6 760 83.2
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1139.4 1241 53.3
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1085.5 891 71.3
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 2.8e-310 1068.9 796 71.6
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 2.6e-308 1062.4 671 82.4
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 4.7e-294 1015.0 926 65.3
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.7e-281 972.6 745 72.1
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 3.5e-281 972.2 982 59.0
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.6e-212 744.2 614 68.4
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 2.9e-190 670.2 539 64.7
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 1.2e-172 611.7 411 76.2
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 3.6e-169 600.1 447 74.3
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 2.4e-168 597.4 972 39.7
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.1e-157 562.0 377 77.2
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.0e-155 555.4 293 92.8
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 2.6e-127 461.1 309 77.0
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 4.5e-127 460.3 1151 33.6
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 6.5e-126 456.4 375 71.2
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 3.3e-122 444.1 237 91.1
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 8.8e-115 419.5 836 38.2
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.5e-114 418.7 313 73.2
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 2.0e-98 365.2 556 44.4
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 5.2e-91 340.5 1299 27.1
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 7.0e-88 330.1 211 77.3
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 1.0e-86 326.2 181 85.6
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 1.0e-86 326.2 181 85.6
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 9.5e-85 319.7 174 89.1
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 4.6e-79 300.8 189 80.4
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.3e-78 299.3 220 72.3
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 6.6e-78 297.0 220 71.8
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 7.5e-74 283.5 338 54.1
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 3.9e-70 271.2 389 53.2
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 6.8e-67 260.4 368 53.3
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.4e-64 252.7 343 51.3
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 7.1e-64 250.4 202 65.3
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 1.2e-60 239.6 179 72.1
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.6e-58 231.9 185 75.7
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 7.1e-56 223.8 157 72.0
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.5e-53 215.3 147 74.1
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 4.5e-50 204.5 316 43.0
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 3.0e-46 191.8 235 52.3
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 9.6e-45 186.8 139 68.3
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 4.8e-44 184.5 329 39.2
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 7.9e-39 167.2 96 85.4
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 2.8e-36 158.7 188 55.3
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 1.5e-34 152.9 83 89.2
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 1.3e-33 149.8 112 65.2
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.1e-32 146.7 98 74.5
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 7.1e-32 144.1 135 58.5
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 7.1e-32 144.1 137 67.2
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 9.3e-32 143.7 77 89.6
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 1.1e-29 136.7 216 44.9
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 2.5e-29 135.6 103 75.7
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 2.5e-24 119.0 87 66.7
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 3.0e-22 112.1 65 89.2
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 8.8e-22 110.5 116 60.3
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 5.7e-21 107.8 76 68.4
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 9.7e-21 107.1 164 39.6
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 2.2e-20 105.9 67 71.6
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 1.2e-18 100.1 98 62.2
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 2.2e-17 95.9 59 84.7
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 3.2e-16 92.0 77 61.0
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 1.6e-15 89.7 69 62.3
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 4.7e-15 88.2 57 71.9
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 7.9e-15 87.4 57 70.2
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 5.7e-13 81.3 119 43.7
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 1.3e-12 80.1 46 87.0
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 2.2e-12 79.3 56 64.3
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 5.0e-09 68.2 113 41.6
Hma1.2p1_3877F.1_g337870 Hydrangea macrophylla HOM05D003924 ORTHO05D228195 8.5e-09 67.4 53 69.8
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 1.1e-08 67.0 141 39.7
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 5.5e-08 64.7 42 71.4
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 1.6e-07 63.2 47 55.3
Hma1.2p1_0786F.1_g217640 Hydrangea macrophylla HOM05D003924 ORTHO05D228318 1.6e-07 63.2 50 70.0
Lsat_1_v5_gn_8_86941 Lactuca sativa HOM05D002786 ORTHO05D003493 1.6e-07 63.2 121 40.5


User provided reference genes

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