Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g20290 Coffea canephora HOM05D002182 ORTHO05D004671 2.4e-18 94.4 44 100.0
Cc07_g19240 Coffea canephora HOM05D002182 ORTHO05D004671 3.4e-12 73.9 39 87.2
PSO384G2582 Papaver somniferum HOM05D002182 ORTHO05D004671 6.3e-11 69.7 39 82.1
PSO443G0075 Papaver somniferum HOM05D002182 ORTHO05D004671 6.3e-11 69.7 39 82.1
GSVIVG01026459001 Vitis vinifera HOM05D002182 ORTHO05D004671 1.4e-10 68.6 42 73.8
Dinv35485 Davidia involucrata HOM05D002182 ORTHO05D004671 1.8e-10 68.2 39 79.5
Lj4C830T7 Lonicera japonica HOM05D002182 ORTHO05D004671 1.8e-10 68.2 39 79.5
CSS0026830 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 4.1e-10 67.0 39 79.5
CiPaw.04G079900 Carya illinoinensis HOM05D002182 ORTHO05D004671 5.4e-10 66.6 39 76.9
QL10p041326 Quercus lobata HOM05D002182 ORTHO05D004671 5.4e-10 66.6 39 76.9
Sed0010212 Sechium edule HOM05D002182 ORTHO05D004671 5.4e-10 66.6 39 76.9
MELO3C009682.2 Cucumis melo HOM05D002182 ORTHO05D004671 7.0e-10 66.2 39 76.9
CsaV3_3G039390 Cucumis sativus L. HOM05D002182 ORTHO05D004671 7.0e-10 66.2 39 76.9
MD15G1134700 Malus domestica HOM05D002182 ORTHO05D004671 7.0e-10 66.2 39 76.9
ATR1001G007 Amborella trichopoda HOM05D002182 ORTHO05D004671 9.1e-10 65.9 39 79.5
Cfa002178 Carpinus fangiana HOM05D002182 ORTHO05D004671 9.1e-10 65.9 39 76.9
Haze_25331 Corylus avellana HOM05D002182 ORTHO05D004671 9.1e-10 65.9 39 76.9
Oeu050090.2 Olea europaea HOM05D002182 ORTHO05D004671 9.1e-10 65.9 39 76.9
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 9.1e-10 65.9 39 76.9
TAR376G0522 Trochodendron aralioides HOM05D002182 ORTHO05D004671 1.2e-09 65.5 39 76.9
unitig_62.g23374 Utricularia gibba HOM05D002182 ORTHO05D004671 1.2e-09 65.5 39 76.9
CSS0041549 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 1.6e-09 65.1 36 83.3
Phvul.009G154850 Phaseolus vulgaris HOM05D002182 ORTHO05D004671 1.6e-09 65.1 39 74.4
SEGI_35171 Sequoiadendron giganteum HOM05D002182 ORTHO05D004671 1.6e-09 65.1 36 83.3
Thecc.01G137400 Theobroma cacao HOM05D002182 ORTHO05D004671 1.6e-09 65.1 39 76.9
VMungo1309G0220 Vigna mungo HOM05D002182 ORTHO05D004671 1.6e-09 65.1 39 74.4
arahy.Tifrunner.gnm1.ann1.K5KUZ3 Arachis hypogaea HOM05D002182 ORTHO05D004671 2.0e-09 64.7 39 74.4
CANSAT01G2275 Cannabis sativa HOM05D002182 ORTHO05D004671 2.0e-09 64.7 39 74.4
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 2.0e-09 64.7 39 74.4
Lalb_Chr11g0068591 Lupinus albus HOM05D002182 ORTHO05D004671 2.0e-09 64.7 39 74.4
Hund21801 Selenicereus undatus HOM05D002182 ORTHO05D004671 2.0e-09 64.7 39 74.4
Eucgr.H05141 Eucalyptus grandis HOM05D002182 ORTHO05D004671 2.7e-09 64.3 39 74.4
Prupe.4G275500 Prunus persica HOM05D002182 ORTHO05D004671 2.7e-09 64.3 39 74.4
HPP92_005922 Vanilla planifolia HOM05D002182 ORTHO05D004671 2.7e-09 64.3 39 76.9
ClCG10G017010 Citrullus lanatus HOM05D002182 ORTHO05D004671 3.5e-09 63.9 35 82.9
Lj1g0008046 Lotus japonicus HOM05D002182 ORTHO05D004671 3.5e-09 63.9 39 74.4
MBI07_g33104_MAGBIO Magnolia biondii HOM05D002182 ORTHO05D004671 3.5e-09 63.9 39 76.9
MBI07_g47060_MAGBIO Magnolia biondii HOM05D002182 ORTHO05D004671 3.5e-09 63.9 39 76.9
Psat5g060640 Pisum sativum HOM05D002182 ORTHO05D004671 3.5e-09 63.9 39 74.4
Sopen05g009910 Solanum pennellii HOM05D002182 ORTHO05D004671 3.5e-09 63.9 39 76.9
TPR.G33581 Trifolium pratense HOM05D002182 ORTHO05D004671 3.5e-09 63.9 39 74.4
Aqoxy5G02289 Aquilegia oxysepala HOM05D002182 ORTHO05D004671 4.5e-09 63.5 39 74.4
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 4.5e-09 63.5 39 74.4
Gohir.A11G057700 Gossypium hirsutum HOM05D002182 ORTHO05D004671 4.5e-09 63.5 39 74.4
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 4.5e-09 63.5 39 74.4
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 4.5e-09 63.5 39 74.4
Os03g0165000 Oryza sativa ssp. japonica HOM05D002182 ORTHO05D004671 4.5e-09 63.5 39 74.4
Zm00001eb005010 Zea mays HOM05D002182 ORTHO05D004671 4.5e-09 63.5 39 74.4
Actinidia20029 Actinidia chinensis HOM05D002182 ORTHO05D004671 5.9e-09 63.2 39 74.4
CAN.G163.2 Capsicum annuum HOM05D002182 ORTHO05D004671 5.9e-09 63.2 35 85.7
AUR62000512 Chenopodium quinoa HOM05D002182 ORTHO05D004671 5.9e-09 63.2 39 71.8
Potri.005G067100 Populus trichocarpa HOM05D002182 ORTHO05D004671 5.9e-09 63.2 39 74.4
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 5.9e-09 63.2 39 74.4
Sabra05G0055200 Salix brachista HOM05D002182 ORTHO05D004671 5.9e-09 63.2 39 74.4
Aa31LG1G17970 Aethionema arabicum HOM05D002182 ORTHO05D004671 7.7e-09 62.8 39 71.8
AT5G63920 Arabidopsis thaliana HOM05D002182 ORTHO05D004671 7.7e-09 62.8 39 71.8
BcaB07g29709 Brassica carinata HOM05D002182 ORTHO05D004671 7.7e-09 62.8 39 71.8
BcaC03g18232 Brassica carinata HOM05D002182 ORTHO05D004671 7.7e-09 62.8 39 71.8
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 7.7e-09 62.8 39 71.8
C02p63010 Brassica napus HOM05D002182 ORTHO05D004671 7.7e-09 62.8 39 71.8
BolC2t12375H Brassica oleracea HOM05D002182 ORTHO05D004671 7.7e-09 62.8 39 71.8
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 7.7e-09 62.8 39 71.8
Carub.0008s2470 Capsella rubella HOM05D002182 ORTHO05D004671 7.7e-09 62.8 39 71.8
Ciclev10003112m.g Citrus clementina HOM05D002182 ORTHO05D004671 7.7e-09 62.8 39 74.4
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 7.7e-09 62.8 39 71.8
Nn5g28440 Nelumbo nucifera HOM05D002182 ORTHO05D004671 7.7e-09 62.8 39 74.4
Sp2g26990 Schrenkiella parvula HOM05D002182 ORTHO05D004671 7.7e-09 62.8 39 71.8
arahy.Tifrunner.gnm1.ann1.XVSB6Y Arachis hypogaea HOM05D002182 ORTHO05D004671 1.0e-08 62.4 35 80.0
Migut.H00803 Erythranthe guttata HOM05D002182 ORTHO05D004671 1.0e-08 62.4 39 74.4
Glyma.06G155600 Glycine max HOM05D002182 ORTHO05D004671 1.0e-08 62.4 39 74.4
HPP92_005923 Vanilla planifolia HOM05D002182 ORTHO05D004671 1.0e-08 62.4 36 80.6
COL.COLO4_35815 Corchorus olitorius HOM05D002182 ORTHO05D004671 1.3e-08 62.0 39 74.4
Lsat_1_v5_gn_1_78841 Lactuca sativa HOM05D002182 ORTHO05D004671 1.3e-08 62.0 39 71.8
FAN19G2097 Fragaria x ananassa HOM05D002182 ORTHO05D004671 1.7e-08 61.6 35 80.0
FAN23G2071 Fragaria x ananassa HOM05D002182 ORTHO05D004671 1.7e-08 61.6 35 80.0
FAN26G0537 Fragaria x ananassa HOM05D002182 ORTHO05D004671 1.7e-08 61.6 35 80.0
HanXRQChr01g0016921 Helianthus annuus HOM05D002182 ORTHO05D004671 1.7e-08 61.6 39 71.8
Manes.13G078050 Manihot esculenta HOM05D002182 ORTHO05D004671 1.7e-08 61.6 39 74.4
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 1.7e-08 61.6 39 71.8
Ah.06g191020 Amaranthus hybridus HOM05D002182 ORTHO05D004671 2.2e-08 61.2 39 71.8
AL8G41160 Arabidopsis lyrata HOM05D002182 ORTHO05D004671 2.2e-08 61.2 35 77.1
EL10Ac4g09621 Beta vulgaris HOM05D002182 ORTHO05D004671 2.2e-08 61.2 39 71.8
PGR102G1182 Punica granatum HOM05D002182 ORTHO05D004671 2.2e-08 61.2 39 71.8
ECA248G2894 Erigeron canadensis HOM05D002182 ORTHO05D004671 2.9e-08 60.8 39 71.8
Medtr3g096640 Medicago truncatula HOM05D002182 ORTHO05D004671 2.9e-08 60.8 39 71.8
Sc16g0009510 Simmondsia chinensis HOM05D002182 ORTHO05D004671 2.9e-08 60.8 39 71.8
Atru.chr4.980 Acer truncatum HOM05D002182 ORTHO05D004671 3.8e-08 60.5 39 74.4
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 3.8e-08 60.5 40 70.0
THA.LOC104818422 Tarenaya hassleriana HOM05D002182 ORTHO05D004671 5.0e-08 60.1 39 69.2
CARHR277840 Cardamine hirsuta HOM05D002182 ORTHO05D004671 6.5e-08 59.7 39 69.2
vmacro12743 Vaccinium macrocarpon HOM05D002182 ORTHO05D004671 6.5e-08 59.7 36 75.0
SHI11490 Sapria himalayana HOM05D002182 ORTHO05D004671 1.5e-07 58.5 35 77.1
AagrBONN_evm.TU.Sc2ySwM_228.5819 Anthoceros agrestis HOM05D002182 ORTHO05D004671 2.5e-07 57.8 39 66.7
DCAR_023889 Daucus carota HOM05D002182 ORTHO05D004671 4.2e-07 57.0 39 66.7
SMO114G0082 Selaginella moellendorffii HOM05D002182 ORTHO05D004671 5.5e-07 56.6 34 76.5
Rhsim10G0124200 Rhododendron simsii HOM05D002182 ORTHO05D004671 2.7e-06 54.3 31 77.4
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 6.1e-06 53.1 31 74.2


User provided reference genes

Program Settings