Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g08880 Coffea canephora HOM05D001410 ORTHO05D016552 6.1e-48 193.7 93 100.0
Cc05_g07020 Coffea canephora HOM05D001410 ORTHO05D016552 1.6e-43 179.1 89 96.6
Cc02_g02500 Coffea canephora HOM05D001410 ORTHO05D006840 1.5e-22 109.4 65 83.1
Cc11_g01030 Coffea canephora HOM05D001410 ORTHO05D016552 3.7e-21 104.8 69 76.8
Migut.F01092 Erythranthe guttata HOM05D001410 ORTHO05D006840 2.7e-19 98.6 65 72.3
GSVIVG01028877001 Vitis vinifera HOM05D001410 ORTHO05D006840 7.8e-19 97.1 65 73.8
Cc00_g01070 Coffea canephora HOM05D001410 ORTHO05D016552 1.0e-18 96.7 80 66.2
Cc00_g34340 Coffea canephora HOM05D001410 ORTHO05D016552 1.0e-18 96.7 76 65.8
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 1.7e-18 95.9 65 69.2
Nn1g01600 Nelumbo nucifera HOM05D001410 ORTHO05D006840 2.3e-18 95.5 65 75.4
SGA_v2.0_scaffold10G05300 Striga asiatica HOM05D001410 ORTHO05D006840 2.3e-18 95.5 65 70.8
COL.COLO4_36928 Corchorus olitorius HOM05D001410 ORTHO05D006840 3.0e-18 95.1 65 75.4
Duzib068G1356 Durio zibethinus HOM05D001410 ORTHO05D006840 3.0e-18 95.1 65 73.8
Lj2g0023395 Lotus japonicus HOM05D001410 ORTHO05D006840 3.0e-18 95.1 65 75.4
Medtr3g100910 Medicago truncatula HOM05D001410 ORTHO05D006840 3.0e-18 95.1 65 75.4
TAR636G1793 Trochodendron aralioides HOM05D001410 ORTHO05D006840 3.0e-18 95.1 65 73.8
Ca_15983_v3 Cicer arietinum L. HOM05D001410 ORTHO05D006840 3.9e-18 94.7 65 73.8
Ciclev10004659m.g Citrus clementina HOM05D001410 ORTHO05D006840 3.9e-18 94.7 65 72.3
SalBow2G1075 Salvia bowleyana HOM05D001410 ORTHO05D006840 3.9e-18 94.7 64 71.9
SalBow2G2133 Salvia bowleyana HOM05D001410 ORTHO05D006840 3.9e-18 94.7 64 71.9
Actinidia03133 Actinidia chinensis HOM05D001410 ORTHO05D006840 5.1e-18 94.4 62 74.2
Peaxi162Scf00647g00325 Petunia axillaris HOM05D001410 ORTHO05D006840 5.1e-18 94.4 65 69.2
Gohir.A12G255700 Gossypium hirsutum HOM05D001410 ORTHO05D006840 6.6e-18 94.0 65 73.8
Gohir.D12G257100 Gossypium hirsutum HOM05D001410 ORTHO05D006840 6.6e-18 94.0 65 73.8
Gorai.008G275300 Gossypium raimondii HOM05D001410 ORTHO05D006840 6.6e-18 94.0 65 73.8
PSO541G3847 Papaver somniferum HOM05D001410 ORTHO05D006840 6.6e-18 94.0 65 72.3
PSO675G7606 Papaver somniferum HOM05D001410 ORTHO05D006840 6.6e-18 94.0 65 72.3
PGSC0003DMG400027526 Solanum tuberosum HOM05D001410 ORTHO05D006840 8.6e-18 93.6 61 75.4
Thecc.03G182500 Theobroma cacao HOM05D001410 ORTHO05D006840 8.6e-18 93.6 65 72.3
Eucgr.A02753 Eucalyptus grandis HOM05D001410 ORTHO05D006840 1.1e-17 93.2 68 67.6
Glyma.16G179800 Glycine max HOM05D001410 ORTHO05D006840 1.1e-17 93.2 65 73.8
Solyc01g096870.4 Solanum lycopersicum HOM05D001410 ORTHO05D006840 1.1e-17 93.2 61 73.8
Sopen01g040580 Solanum pennellii HOM05D001410 ORTHO05D006840 1.1e-17 93.2 61 73.8
Dinv28396 Davidia involucrata HOM05D001410 ORTHO05D006840 1.5e-17 92.8 62 71.0
Psat5g045320 Pisum sativum HOM05D001410 ORTHO05D006840 1.5e-17 92.8 65 72.3
TPR.G26044 Trifolium pratense HOM05D001410 ORTHO05D006840 1.5e-17 92.8 65 73.8
Aqoxy7G00253 Aquilegia oxysepala HOM05D001410 ORTHO05D006840 1.9e-17 92.4 65 69.2
CANSAT21G1393 Cannabis sativa HOM05D001410 ORTHO05D006840 1.9e-17 92.4 65 70.8
Glyma.09G133200 Glycine max HOM05D001410 ORTHO05D006840 1.9e-17 92.4 65 73.8
Phvul.004G109800 Phaseolus vulgaris HOM05D001410 ORTHO05D006840 1.9e-17 92.4 65 73.8
unitig_60.g25549 Utricularia gibba HOM05D001410 ORTHO05D006840 1.9e-17 92.4 65 67.7
VMungo0464G1027 Vigna mungo HOM05D001410 ORTHO05D016552 1.9e-17 92.4 65 73.8
QL09p013112 Quercus lobata HOM05D001410 ORTHO05D006840 3.3e-17 91.7 65 72.3
Sc09g0007270 Simmondsia chinensis HOM05D001410 ORTHO05D006840 3.3e-17 91.7 62 74.2
vmacro09819 Vaccinium macrocarpon HOM05D001410 ORTHO05D006840 3.3e-17 91.7 62 72.6
Duzib084G0352 Durio zibethinus HOM05D001410 ORTHO05D006840 4.3e-17 91.3 65 70.8
HanXRQChr07g0206941 Helianthus annuus HOM05D001410 ORTHO05D006840 4.3e-17 91.3 65 66.2
Nitab4.5_0001611g0080 Nicotiana tabacum HOM05D001410 ORTHO05D006840 4.3e-17 91.3 65 69.2
Nitab4.5_0005056g0110 Nicotiana tabacum HOM05D001410 ORTHO05D006840 4.3e-17 91.3 65 69.2
Atru.chr1.370 Acer truncatum HOM05D001410 ORTHO05D006840 5.6e-17 90.9 62 72.6
Atru.chr1.387 Acer truncatum HOM05D001410 ORTHO05D006840 5.6e-17 90.9 62 72.6
Atru.ctg97_1.1 Acer truncatum HOM05D001410 ORTHO05D006840 5.6e-17 90.9 62 72.6
Manes.14G023300 Manihot esculenta HOM05D001410 ORTHO05D006840 5.6e-17 90.9 65 70.8
CiPaw.05G263200 Carya illinoinensis HOM05D001410 ORTHO05D006840 7.3e-17 90.5 62 74.2
ClCG05G008280 Citrullus lanatus HOM05D001410 ORTHO05D006840 7.3e-17 90.5 65 70.8
Rhsim09G0200200 Rhododendron simsii HOM05D001410 ORTHO05D006840 7.3e-17 90.5 62 71.0
TWI14G0872 Tripterygium wilfordii HOM05D001410 ORTHO05D006840 7.3e-17 90.5 67 71.6
CSS0001759 Camellia sinensis var. sinensis HOM05D001410 ORTHO05D006840 9.6e-17 90.1 62 71.0
Cpa.g.sc107.96 Carica papaya HOM05D001410 ORTHO05D006840 9.6e-17 90.1 62 72.6
Lj1C1004T3 Lonicera japonica HOM05D001410 ORTHO05D006840 9.6e-17 90.1 60 75.0
HanXRQChr04g0120461 Helianthus annuus HOM05D001410 ORTHO05D006840 1.2e-16 89.7 65 66.2
Prupe.2G299500 Prunus persica HOM05D001410 ORTHO05D006840 1.2e-16 89.7 65 69.2
PGR042G0190 Punica granatum HOM05D001410 ORTHO05D006840 1.2e-16 89.7 65 67.7
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 1.2e-16 89.7 62 72.6
TWI39G0800 Tripterygium wilfordii HOM05D001410 ORTHO05D006840 1.2e-16 89.7 65 70.8
BcaB05g21963 Brassica carinata HOM05D001410 ORTHO05D006840 1.6e-16 89.4 65 67.7
Carub.0008s1264 Capsella rubella HOM05D001410 ORTHO05D006840 1.6e-16 89.4 65 66.2
Hma1.2p1_0327F.1_g126300 Hydrangea macrophylla HOM05D001410 ORTHO05D006840 1.6e-16 89.4 62 71.0
Hma1.2p1_0327F.1_g126310 Hydrangea macrophylla HOM05D001410 ORTHO05D006840 1.6e-16 89.4 62 71.0
Lalb_Chr02g0141201 Lupinus albus HOM05D001410 ORTHO05D006840 1.6e-16 89.4 65 69.2
Oeu045369.1 Olea europaea HOM05D001410 ORTHO05D006840 1.6e-16 89.4 62 71.0
Prupe.5G076000 Prunus persica HOM05D001410 ORTHO05D006840 1.6e-16 89.4 65 66.2
Sed0018120 Sechium edule HOM05D001410 ORTHO05D006840 1.6e-16 89.4 65 69.2
arahy.Tifrunner.gnm1.ann1.18GXDP Arachis hypogaea HOM05D001410 ORTHO05D006840 2.1e-16 89.0 65 69.2
arahy.Tifrunner.gnm1.ann1.BA6YY5 Arachis hypogaea HOM05D001410 ORTHO05D006840 2.1e-16 89.0 65 69.2
Potri.017G142500 Populus trichocarpa HOM05D001410 ORTHO05D006840 2.1e-16 89.0 62 72.6
THA.LOC104811964 Tarenaya hassleriana HOM05D001410 ORTHO05D006840 2.1e-16 89.0 74 59.5
Aqoxy2G01498 Aquilegia oxysepala HOM05D001410 ORTHO05D016552 2.8e-16 88.6 61 68.9
AL8G26980 Arabidopsis lyrata HOM05D001410 ORTHO05D006840 2.8e-16 88.6 65 66.2
Haze_00033 Corylus avellana HOM05D001410 ORTHO05D006840 2.8e-16 88.6 62 72.6
ATR0661G435 Amborella trichopoda HOM05D001410 ORTHO05D006840 3.6e-16 88.2 65 69.2
CARHR265490 Cardamine hirsuta HOM05D001410 ORTHO05D006840 3.6e-16 88.2 65 66.2
CDE11G0932 Ceratophyllum demersum HOM05D001410 ORTHO05D006840 3.6e-16 88.2 65 67.7
MBI04_g30786_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D006840 3.6e-16 88.2 65 67.7
Sp6g14710 Schrenkiella parvula HOM05D001410 ORTHO05D006840 3.6e-16 88.2 65 67.7
A02p11770 Brassica napus HOM05D001410 ORTHO05D006840 4.7e-16 87.8 65 66.2
BraA02t06242Z Brassica rapa HOM05D001410 ORTHO05D006840 4.7e-16 87.8 65 66.2
BcaB08g35606 Brassica carinata HOM05D001410 ORTHO05D006840 6.2e-16 87.4 65 64.6
BcaC03g14524 Brassica carinata HOM05D001410 ORTHO05D006840 6.2e-16 87.4 65 66.2
BcaC04g20579 Brassica carinata HOM05D001410 ORTHO05D006840 6.2e-16 87.4 65 66.2
C09p41940 Brassica napus HOM05D001410 ORTHO05D006840 6.2e-16 87.4 65 66.2
BolC9t57078H Brassica oleracea HOM05D001410 ORTHO05D006840 6.2e-16 87.4 65 66.2
DCAR_009384 Daucus carota HOM05D001410 ORTHO05D006840 6.2e-16 87.4 62 66.1
Oeu033106.1 Olea europaea HOM05D001410 ORTHO05D006840 6.2e-16 87.4 62 69.4
AT5G52520 Arabidopsis thaliana HOM05D001410 ORTHO05D006840 8.1e-16 87.0 65 63.1
EL10Ac2g03345 Beta vulgaris HOM05D001410 ORTHO05D006840 8.1e-16 87.0 62 66.1
MELO3C019492.2 Cucumis melo HOM05D001410 ORTHO05D006840 8.1e-16 87.0 62 71.0
Thhalv10013193m.g Eutrema salsugineum HOM05D001410 ORTHO05D006840 8.1e-16 87.0 67 64.2
Os07g0165000 Oryza sativa ssp. japonica HOM05D001410 ORTHO05D006840 8.1e-16 87.0 65 61.5
Cfa016279 Carpinus fangiana HOM05D001410 ORTHO05D006840 1.1e-15 86.7 62 71.0
CsaV3_3G018830 Cucumis sativus L. HOM05D001410 ORTHO05D006840 1.1e-15 86.7 62 71.0
DCAR_014517 Daucus carota HOM05D001410 ORTHO05D006840 1.1e-15 86.7 62 66.1
AUR62037623 Chenopodium quinoa HOM05D001410 ORTHO05D006840 1.4e-15 86.3 62 64.5
FvH4_5g00340 Fragaria vesca HOM05D001410 ORTHO05D006840 1.4e-15 86.3 62 67.7
FAN08G3530 Fragaria x ananassa HOM05D001410 ORTHO05D006840 1.4e-15 86.3 62 67.7
Lsat_1_v5_gn_2_131140 Lactuca sativa HOM05D001410 ORTHO05D006840 1.4e-15 86.3 65 64.6
HPP92_028053 Vanilla planifolia HOM05D001410 ORTHO05D006840 1.4e-15 86.3 62 64.5
Zm00001eb300750 Zea mays HOM05D001410 ORTHO05D006840 1.4e-15 86.3 61 60.7
MBI04_g21149_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D006840 1.8e-15 85.9 65 66.2
BNapus_Darmor_BZH_scaffold_232p00120 Brassica napus HOM05D001410 ORTHO05D006840 2.4e-15 85.5 65 66.2
C02p19590 Brassica napus HOM05D001410 ORTHO05D006840 2.4e-15 85.5 65 66.2
BolC2t08096H Brassica oleracea HOM05D001410 ORTHO05D006840 2.4e-15 85.5 65 66.2
AUR62040861 Chenopodium quinoa HOM05D001410 ORTHO05D006840 2.4e-15 85.5 62 64.5
FAN04G1960 Fragaria x ananassa HOM05D001410 ORTHO05D006840 2.4e-15 85.5 62 67.7
FAN13G2235 Fragaria x ananassa HOM05D001410 ORTHO05D006840 2.4e-15 85.5 62 67.7
RcHm_v2.0_Chr7g0202211 Rosa chinensis HOM05D001410 ORTHO05D006840 2.4e-15 85.5 62 67.7
ECA238G2766 Erigeron canadensis HOM05D001410 ORTHO05D006840 3.1e-15 85.1 65 64.6
Hund12464 Selenicereus undatus HOM05D001410 ORTHO05D006840 3.1e-15 85.1 62 66.1
Duzib205G1919 Durio zibethinus HOM05D001410 ORTHO05D016552 6.8e-15 84.0 65 64.6
Ah.16g106580 Amaranthus hybridus HOM05D001410 ORTHO05D006840 8.9e-15 83.6 62 61.3
Aa31LG3G8870 Aethionema arabicum HOM05D001410 ORTHO05D006840 1.2e-14 83.2 65 64.6
SEGI_03261 Sequoiadendron giganteum HOM05D001410 ORTHO05D006840 1.5e-14 82.8 65 61.5
SMO114G0131 Selaginella moellendorffii HOM05D001410 ORTHO05D006840 5.8e-14 80.9 67 55.2
VMungo1127G0793 Vigna mungo HOM05D001410 ORTHO05D000299 9.9e-14 80.1 65 64.6
A10p10070 Brassica napus HOM05D001410 ORTHO05D006840 2.9e-13 78.6 60 63.3
BraA10t43089Z Brassica rapa HOM05D001410 ORTHO05D006840 2.9e-13 78.6 60 63.3
Pp3c21_580 Physcomitrium patens HOM05D001410 ORTHO05D006840 2.9e-13 78.6 65 55.4
MBI04_g21147_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D016552 2.4e-12 75.5 65 61.5
Mapoly0051s0001 Marchantia polymorpha HOM05D001410 ORTHO05D006840 3.5e-11 71.6 64 54.7
AagrBONN_evm.TU.Sc2ySwM_228.2217 Anthoceros agrestis HOM05D001410 ORTHO05D006840 4.6e-11 71.2 62 53.2
BcaNung07179 Brassica carinata HOM05D001410 ORTHO05D006840 1.3e-10 69.7 52 63.5
PRCOL_00004237 Prasinoderma coloniale HOM05D001410 ORTHO05D006840 8.7e-10 67.0 56 50.0
MCO06G048 Micromonas commoda HOM05D001410 ORTHO05D006840 1.1e-09 66.6 63 46.0
Cre09.g406200 Chlamydomonas reinhardtii HOM05D001410 ORTHO05D006840 1.5e-09 66.2 64 48.4
Cc02_g18490 Coffea canephora HOM05D001410 ORTHO05D154158 2.5e-09 65.5 56 58.9
Lalb_Chr02g0141421 Lupinus albus HOM05D001410 ORTHO05D006840 9.6e-09 63.5 65 56.9
arahy.Tifrunner.gnm1.ann1.D8GG75 Arachis hypogaea HOM05D001410 ORTHO05D006840 2.1e-08 62.4 65 55.4
Lsat_1_v5_gn_9_93401 Lactuca sativa HOM05D001410 ORTHO05D003969 1.2e-06 56.6 71 45.1


User provided reference genes

Program Settings