Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g07020 Coffea canephora HOM05D001410 ORTHO05D016552 3.3e-74 281.6 136 100.0
Cc05_g08880 Coffea canephora HOM05D001410 ORTHO05D016552 3.9e-43 178.3 89 96.6
Cc02_g02500 Coffea canephora HOM05D001410 ORTHO05D006840 2.0e-23 112.8 65 86.2
Cc11_g01030 Coffea canephora HOM05D001410 ORTHO05D016552 1.1e-21 107.1 68 79.4
Migut.F01092 Erythranthe guttata HOM05D001410 ORTHO05D006840 3.6e-20 102.1 65 75.4
Cc00_g34340 Coffea canephora HOM05D001410 ORTHO05D016552 7.9e-20 100.9 76 68.4
GSVIVG01028877001 Vitis vinifera HOM05D001410 ORTHO05D006840 1.0e-19 100.5 65 76.9
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 2.3e-19 99.4 65 72.3
Cc00_g01070 Coffea canephora HOM05D001410 ORTHO05D016552 2.3e-19 99.4 75 68.0
SGA_v2.0_scaffold10G05300 Striga asiatica HOM05D001410 ORTHO05D006840 3.0e-19 99.0 65 73.8
COL.COLO4_36928 Corchorus olitorius HOM05D001410 ORTHO05D006840 3.9e-19 98.6 65 78.5
Duzib068G1356 Durio zibethinus HOM05D001410 ORTHO05D006840 3.9e-19 98.6 65 76.9
Lj2g0023395 Lotus japonicus HOM05D001410 ORTHO05D006840 3.9e-19 98.6 65 78.5
Medtr3g100910 Medicago truncatula HOM05D001410 ORTHO05D006840 3.9e-19 98.6 65 78.5
SalBow2G1075 Salvia bowleyana HOM05D001410 ORTHO05D006840 3.9e-19 98.6 64 75.0
SalBow2G2133 Salvia bowleyana HOM05D001410 ORTHO05D006840 3.9e-19 98.6 64 75.0
Actinidia03133 Actinidia chinensis HOM05D001410 ORTHO05D006840 5.1e-19 98.2 62 77.4
Ca_15983_v3 Cicer arietinum L. HOM05D001410 ORTHO05D006840 5.1e-19 98.2 65 76.9
Ciclev10004659m.g Citrus clementina HOM05D001410 ORTHO05D006840 5.1e-19 98.2 65 75.4
Nn1g01600 Nelumbo nucifera HOM05D001410 ORTHO05D006840 6.7e-19 97.8 65 76.9
Peaxi162Scf00647g00325 Petunia axillaris HOM05D001410 ORTHO05D006840 6.7e-19 97.8 65 72.3
Gohir.A12G255700 Gossypium hirsutum HOM05D001410 ORTHO05D006840 8.8e-19 97.4 65 76.9
Gohir.D12G257100 Gossypium hirsutum HOM05D001410 ORTHO05D006840 8.8e-19 97.4 65 76.9
Gorai.008G275300 Gossypium raimondii HOM05D001410 ORTHO05D006840 8.8e-19 97.4 65 76.9
PSO541G3847 Papaver somniferum HOM05D001410 ORTHO05D006840 8.8e-19 97.4 65 75.4
PSO675G7606 Papaver somniferum HOM05D001410 ORTHO05D006840 8.8e-19 97.4 65 75.4
TAR636G1793 Trochodendron aralioides HOM05D001410 ORTHO05D006840 8.8e-19 97.4 65 75.4
Thecc.03G182500 Theobroma cacao HOM05D001410 ORTHO05D006840 1.1e-18 97.1 65 75.4
Dinv28396 Davidia involucrata HOM05D001410 ORTHO05D006840 1.5e-18 96.7 62 74.2
PGSC0003DMG400027526 Solanum tuberosum HOM05D001410 ORTHO05D006840 1.5e-18 96.7 61 78.7
Psat5g045320 Pisum sativum HOM05D001410 ORTHO05D006840 1.9e-18 96.3 65 75.4
Solyc01g096870.4 Solanum lycopersicum HOM05D001410 ORTHO05D006840 1.9e-18 96.3 61 77.0
Sopen01g040580 Solanum pennellii HOM05D001410 ORTHO05D006840 1.9e-18 96.3 61 77.0
TPR.G26044 Trifolium pratense HOM05D001410 ORTHO05D006840 1.9e-18 96.3 65 76.9
Aqoxy7G00253 Aquilegia oxysepala HOM05D001410 ORTHO05D006840 2.5e-18 95.9 65 72.3
unitig_60.g25549 Utricularia gibba HOM05D001410 ORTHO05D006840 2.5e-18 95.9 65 70.8
Sc09g0007270 Simmondsia chinensis HOM05D001410 ORTHO05D006840 3.3e-18 95.5 62 77.4
vmacro09819 Vaccinium macrocarpon HOM05D001410 ORTHO05D006840 3.3e-18 95.5 62 75.8
QL09p013112 Quercus lobata HOM05D001410 ORTHO05D006840 4.3e-18 95.1 65 75.4
Atru.chr1.370 Acer truncatum HOM05D001410 ORTHO05D006840 5.7e-18 94.7 62 75.8
Atru.chr1.387 Acer truncatum HOM05D001410 ORTHO05D006840 5.7e-18 94.7 62 75.8
Atru.ctg97_1.1 Acer truncatum HOM05D001410 ORTHO05D006840 5.7e-18 94.7 62 75.8
CANSAT21G1393 Cannabis sativa HOM05D001410 ORTHO05D006840 5.7e-18 94.7 65 72.3
Duzib084G0352 Durio zibethinus HOM05D001410 ORTHO05D006840 5.7e-18 94.7 65 73.8
Glyma.09G133200 Glycine max HOM05D001410 ORTHO05D006840 5.7e-18 94.7 65 75.4
HanXRQChr07g0206941 Helianthus annuus HOM05D001410 ORTHO05D006840 5.7e-18 94.7 65 69.2
Nitab4.5_0001611g0080 Nicotiana tabacum HOM05D001410 ORTHO05D006840 5.7e-18 94.7 65 72.3
Nitab4.5_0005056g0110 Nicotiana tabacum HOM05D001410 ORTHO05D006840 5.7e-18 94.7 65 72.3
Phvul.004G109800 Phaseolus vulgaris HOM05D001410 ORTHO05D006840 5.7e-18 94.7 65 75.4
VMungo0464G1027 Vigna mungo HOM05D001410 ORTHO05D016552 5.7e-18 94.7 65 75.4
CiPaw.05G263200 Carya illinoinensis HOM05D001410 ORTHO05D006840 7.4e-18 94.4 62 77.4
Manes.14G023300 Manihot esculenta HOM05D001410 ORTHO05D006840 7.4e-18 94.4 65 73.8
Rhsim09G0200200 Rhododendron simsii HOM05D001410 ORTHO05D006840 7.4e-18 94.4 62 74.2
Cpa.g.sc107.96 Carica papaya HOM05D001410 ORTHO05D006840 9.7e-18 94.0 62 75.8
Eucgr.A02753 Eucalyptus grandis HOM05D001410 ORTHO05D006840 9.7e-18 94.0 68 67.6
TWI14G0872 Tripterygium wilfordii HOM05D001410 ORTHO05D006840 9.7e-18 94.0 67 74.6
HanXRQChr04g0120461 Helianthus annuus HOM05D001410 ORTHO05D006840 1.7e-17 93.2 65 69.2
Hma1.2p1_0327F.1_g126300 Hydrangea macrophylla HOM05D001410 ORTHO05D006840 1.7e-17 93.2 62 74.2
Hma1.2p1_0327F.1_g126310 Hydrangea macrophylla HOM05D001410 ORTHO05D006840 1.7e-17 93.2 62 74.2
Oeu045369.1 Olea europaea HOM05D001410 ORTHO05D006840 1.7e-17 93.2 62 74.2
Prupe.2G299500 Prunus persica HOM05D001410 ORTHO05D006840 1.7e-17 93.2 65 72.3
TWI39G0800 Tripterygium wilfordii HOM05D001410 ORTHO05D006840 1.7e-17 93.2 65 73.8
BcaB05g21963 Brassica carinata HOM05D001410 ORTHO05D006840 2.2e-17 92.8 65 70.8
Carub.0008s1264 Capsella rubella HOM05D001410 ORTHO05D006840 2.2e-17 92.8 65 69.2
ClCG05G008280 Citrullus lanatus HOM05D001410 ORTHO05D006840 2.2e-17 92.8 65 72.3
Potri.017G142500 Populus trichocarpa HOM05D001410 ORTHO05D006840 2.2e-17 92.8 62 75.8
Prupe.5G076000 Prunus persica HOM05D001410 ORTHO05D006840 2.2e-17 92.8 65 69.2
arahy.Tifrunner.gnm1.ann1.18GXDP Arachis hypogaea HOM05D001410 ORTHO05D006840 2.8e-17 92.4 65 72.3
arahy.Tifrunner.gnm1.ann1.BA6YY5 Arachis hypogaea HOM05D001410 ORTHO05D006840 2.8e-17 92.4 65 72.3
Haze_00033 Corylus avellana HOM05D001410 ORTHO05D006840 2.8e-17 92.4 62 75.8
Glyma.16G179800 Glycine max HOM05D001410 ORTHO05D006840 2.8e-17 92.4 65 73.8
THA.LOC104811964 Tarenaya hassleriana HOM05D001410 ORTHO05D006840 2.8e-17 92.4 74 62.2
AL8G26980 Arabidopsis lyrata HOM05D001410 ORTHO05D006840 3.7e-17 92.0 65 69.2
PGR042G0190 Punica granatum HOM05D001410 ORTHO05D006840 3.7e-17 92.0 65 69.2
ATR0661G435 Amborella trichopoda HOM05D001410 ORTHO05D006840 4.8e-17 91.7 65 72.3
Aqoxy2G01498 Aquilegia oxysepala HOM05D001410 ORTHO05D016552 4.8e-17 91.7 61 72.1
CARHR265490 Cardamine hirsuta HOM05D001410 ORTHO05D006840 4.8e-17 91.7 65 69.2
Lalb_Chr02g0141201 Lupinus albus HOM05D001410 ORTHO05D006840 4.8e-17 91.7 65 70.8
MBI04_g30786_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D006840 4.8e-17 91.7 65 70.8
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 4.8e-17 91.7 102 54.9
Sp6g14710 Schrenkiella parvula HOM05D001410 ORTHO05D006840 4.8e-17 91.7 65 70.8
Sed0018120 Sechium edule HOM05D001410 ORTHO05D006840 4.8e-17 91.7 65 70.8
A02p11770 Brassica napus HOM05D001410 ORTHO05D006840 6.3e-17 91.3 65 69.2
BraA02t06242Z Brassica rapa HOM05D001410 ORTHO05D006840 6.3e-17 91.3 65 69.2
DCAR_009384 Daucus carota HOM05D001410 ORTHO05D006840 6.3e-17 91.3 62 69.4
Oeu033106.1 Olea europaea HOM05D001410 ORTHO05D006840 6.3e-17 91.3 62 72.6
BcaB08g35606 Brassica carinata HOM05D001410 ORTHO05D006840 8.2e-17 90.9 65 67.7
BcaC03g14524 Brassica carinata HOM05D001410 ORTHO05D006840 8.2e-17 90.9 65 69.2
BcaC04g20579 Brassica carinata HOM05D001410 ORTHO05D006840 8.2e-17 90.9 65 69.2
C09p41940 Brassica napus HOM05D001410 ORTHO05D006840 8.2e-17 90.9 65 69.2
BolC9t57078H Brassica oleracea HOM05D001410 ORTHO05D006840 8.2e-17 90.9 65 69.2
CSS0001759 Camellia sinensis var. sinensis HOM05D001410 ORTHO05D006840 8.2e-17 90.9 62 72.6
Lj1C1004T3 Lonicera japonica HOM05D001410 ORTHO05D006840 8.2e-17 90.9 60 76.7
AT5G52520 Arabidopsis thaliana HOM05D001410 ORTHO05D006840 1.1e-16 90.5 65 66.2
Cfa016279 Carpinus fangiana HOM05D001410 ORTHO05D006840 1.1e-16 90.5 62 74.2
DCAR_014517 Daucus carota HOM05D001410 ORTHO05D006840 1.1e-16 90.5 62 69.4
MELO3C019492.2 Cucumis melo HOM05D001410 ORTHO05D006840 1.8e-16 89.7 62 72.6
Lsat_1_v5_gn_2_131140 Lactuca sativa HOM05D001410 ORTHO05D006840 1.8e-16 89.7 65 67.7
CsaV3_3G018830 Cucumis sativus L. HOM05D001410 ORTHO05D006840 2.4e-16 89.4 62 72.6
Thhalv10013193m.g Eutrema salsugineum HOM05D001410 ORTHO05D006840 2.4e-16 89.4 67 65.7
FAN04G1960 Fragaria x ananassa HOM05D001410 ORTHO05D006840 2.4e-16 89.4 62 71.0
FAN13G2235 Fragaria x ananassa HOM05D001410 ORTHO05D006840 2.4e-16 89.4 62 71.0
MBI04_g21149_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D006840 2.4e-16 89.4 65 69.2
Os07g0165000 Oryza sativa ssp. japonica HOM05D001410 ORTHO05D006840 2.4e-16 89.4 65 63.1
RcHm_v2.0_Chr7g0202211 Rosa chinensis HOM05D001410 ORTHO05D006840 2.4e-16 89.4 62 71.0
BNapus_Darmor_BZH_scaffold_232p00120 Brassica napus HOM05D001410 ORTHO05D006840 3.1e-16 89.0 65 69.2
C02p19590 Brassica napus HOM05D001410 ORTHO05D006840 3.1e-16 89.0 65 69.2
BolC2t08096H Brassica oleracea HOM05D001410 ORTHO05D006840 3.1e-16 89.0 65 69.2
CDE11G0932 Ceratophyllum demersum HOM05D001410 ORTHO05D006840 4.1e-16 88.6 65 69.2
ECA238G2766 Erigeron canadensis HOM05D001410 ORTHO05D006840 4.1e-16 88.6 65 67.7
Zm00001eb300750 Zea mays HOM05D001410 ORTHO05D006840 5.3e-16 88.2 61 62.3
Hund12464 Selenicereus undatus HOM05D001410 ORTHO05D006840 6.9e-16 87.8 62 67.7
HPP92_028053 Vanilla planifolia HOM05D001410 ORTHO05D006840 6.9e-16 87.8 62 64.5
Duzib205G1919 Durio zibethinus HOM05D001410 ORTHO05D016552 9.1e-16 87.4 65 67.7
FvH4_5g00340 Fragaria vesca HOM05D001410 ORTHO05D006840 1.2e-15 87.0 62 69.4
FAN08G3530 Fragaria x ananassa HOM05D001410 ORTHO05D006840 1.2e-15 87.0 62 69.4
Aa31LG3G8870 Aethionema arabicum HOM05D001410 ORTHO05D006840 1.5e-15 86.7 65 67.7
EL10Ac2g03345 Beta vulgaris HOM05D001410 ORTHO05D006840 1.5e-15 86.7 62 66.1
AUR62037623 Chenopodium quinoa HOM05D001410 ORTHO05D006840 2.6e-15 85.9 62 64.5
AUR62040861 Chenopodium quinoa HOM05D001410 ORTHO05D006840 4.5e-15 85.1 62 64.5
Ah.16g106580 Amaranthus hybridus HOM05D001410 ORTHO05D006840 1.7e-14 83.2 62 61.3
SMO114G0131 Selaginella moellendorffii HOM05D001410 ORTHO05D006840 1.7e-14 83.2 67 56.7
SEGI_03261 Sequoiadendron giganteum HOM05D001410 ORTHO05D006840 1.7e-14 83.2 65 63.1
VMungo1127G0793 Vigna mungo HOM05D001410 ORTHO05D000299 2.9e-14 82.4 65 66.2
A10p10070 Brassica napus HOM05D001410 ORTHO05D006840 3.8e-14 82.0 60 66.7
BraA10t43089Z Brassica rapa HOM05D001410 ORTHO05D006840 3.8e-14 82.0 60 66.7
Pp3c21_580 Physcomitrium patens HOM05D001410 ORTHO05D006840 1.9e-13 79.7 65 55.4
MBI04_g21147_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D016552 1.6e-12 76.6 65 63.1
BcaNung07179 Brassica carinata HOM05D001410 ORTHO05D006840 1.4e-11 73.6 52 67.3
AagrBONN_evm.TU.Sc2ySwM_228.2217 Anthoceros agrestis HOM05D001410 ORTHO05D006840 2.3e-11 72.8 62 53.2
Mapoly0051s0001 Marchantia polymorpha HOM05D001410 ORTHO05D006840 5.1e-11 71.6 64 54.7
MCO06G048 Micromonas commoda HOM05D001410 ORTHO05D006840 5.7e-10 68.2 63 46.0
PRCOL_00004237 Prasinoderma coloniale HOM05D001410 ORTHO05D006840 5.7e-10 68.2 56 50.0
Cc02_g18490 Coffea canephora HOM05D001410 ORTHO05D154158 7.4e-10 67.8 56 60.7
Cre09.g406200 Chlamydomonas reinhardtii HOM05D001410 ORTHO05D006840 9.7e-10 67.4 64 48.4
Lalb_Chr02g0141421 Lupinus albus HOM05D001410 ORTHO05D006840 2.2e-09 66.2 65 58.5
arahy.Tifrunner.gnm1.ann1.D8GG75 Arachis hypogaea HOM05D001410 ORTHO05D006840 2.8e-09 65.9 65 58.5
Lsat_1_v5_gn_9_93401 Lactuca sativa HOM05D001410 ORTHO05D003969 1.0e-06 57.4 71 45.1


User provided reference genes

Program Settings