Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 1.8e-179 632.5 330 100.0
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 6.2e-143 511.1 329 81.2
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 2.3e-142 509.2 330 80.0
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.5e-141 506.5 330 79.4
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 3.4e-141 505.4 330 79.1
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 5.1e-137 491.5 326 78.5
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 1.1e-136 490.3 331 75.5
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 3.3e-136 488.8 331 76.1
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 1.2e-135 486.9 330 76.4
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 1.2e-135 486.9 347 74.4
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 2.8e-135 485.7 329 76.0
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 1.4e-134 483.4 331 76.1
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 2.3e-134 482.6 329 76.3
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 3.1e-134 482.3 331 73.7
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 3.1e-134 482.3 330 74.8
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 6.8e-134 481.1 331 75.5
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 5.8e-133 478.0 332 73.2
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 9.9e-133 477.2 329 72.9
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 8.3e-132 474.2 330 75.2
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 2.4e-131 472.6 328 74.7
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 3.2e-131 472.2 295 83.1
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 3.2e-131 472.2 361 69.8
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 4.1e-131 471.9 329 74.5
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 7.1e-131 471.1 329 72.9
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 9.2e-131 470.7 326 74.8
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 1.2e-130 470.3 331 74.0
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 3.5e-130 468.8 330 72.4
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 3.5e-130 468.8 329 71.7
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 6.0e-130 468.0 329 72.3
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 6.0e-130 468.0 330 72.1
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 1.3e-129 466.8 330 71.8
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 1.7e-129 466.5 330 72.1
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 1.7e-129 466.5 329 73.3
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 3.0e-129 465.7 331 73.1
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 3.0e-129 465.7 330 74.5
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 3.0e-129 465.7 329 72.3
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 3.9e-129 465.3 364 68.4
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 5.1e-129 464.9 331 72.8
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 5.1e-129 464.9 330 74.5
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 8.6e-129 464.2 331 72.8
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 8.6e-129 464.2 328 70.1
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 1.9e-128 463.0 328 70.1
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.5e-128 462.6 331 73.1
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 3.3e-128 462.2 331 73.1
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 3.3e-128 462.2 330 70.0
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 7.3e-128 461.1 329 70.8
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 9.5e-128 460.7 331 71.0
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 1.2e-127 460.3 330 70.6
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 2.1e-127 459.5 329 69.9
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 3.6e-127 458.8 331 70.7
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 6.2e-127 458.0 331 71.3
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 8.1e-127 457.6 357 68.6
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.1e-126 457.2 329 69.9
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.4e-126 456.8 329 69.6
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 1.4e-126 456.8 330 73.0
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 1.4e-126 456.8 330 69.4
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 2.4e-126 456.1 329 72.3
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 4.0e-126 455.3 330 71.5
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 4.0e-126 455.3 327 72.8
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 6.8e-126 454.5 331 69.5
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 8.9e-126 454.1 331 70.4
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 1.5e-125 453.4 330 72.4
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 3.4e-125 452.2 330 72.7
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 9.9e-125 450.7 332 69.0
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 9.9e-125 450.7 329 70.8
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.3e-124 450.3 320 71.9
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 4.9e-124 448.4 328 69.8
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.4e-123 446.8 329 68.4
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 3.2e-123 445.7 329 68.4
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 3.2e-123 445.7 329 70.5
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 5.4e-123 444.9 328 70.4
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 5.4e-123 444.9 329 68.1
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 7.1e-123 444.5 332 67.8
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 9.2e-123 444.1 331 69.2
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 3.5e-122 442.2 329 69.6
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 4.6e-122 441.8 329 69.9
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 7.8e-122 441.0 276 81.9
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 8.7e-121 437.6 332 67.5
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 1.1e-120 437.2 329 69.3
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 1.5e-120 436.8 328 66.2
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 3.3e-120 435.6 327 67.3
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 5.6e-120 434.9 330 68.8
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 9.6e-120 434.1 329 68.4
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 1.3e-119 433.7 328 66.2
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 3.6e-119 432.2 328 65.9
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 1.8e-118 429.9 399 58.9
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 2.4e-118 429.5 328 66.2
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.4e-118 429.5 328 64.6
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 6.9e-118 427.9 328 66.2
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 9.0e-118 427.6 328 65.2
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.5e-117 426.8 328 66.5
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 9.9e-117 424.1 328 65.5
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 2.4e-115 419.5 328 64.3
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 2.1e-114 416.4 328 62.5
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 2.1e-114 416.4 329 64.4
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 1.7e-113 413.3 338 61.5
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 4.3e-112 408.7 329 63.8
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.6e-111 406.8 319 66.1
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 3.6e-111 405.6 329 66.0
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 1.4e-110 403.7 291 69.8
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 1.8e-110 403.3 324 63.3
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 2.0e-109 399.8 325 63.1
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 6.4e-108 394.8 329 63.8
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 5.1e-105 385.2 323 60.7
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 5.1e-105 385.2 331 62.2
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 6.9e-102 374.8 327 59.3
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 1.0e-97 360.9 329 59.9
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 8.7e-97 357.8 323 61.0
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 2.0e-93 346.7 329 61.7
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 8.7e-89 331.3 331 55.9
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 1.9e-88 330.1 320 53.8
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 1.6e-87 327.0 323 51.1
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 3.1e-86 322.8 321 54.2
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 6.9e-86 321.6 276 63.8
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 3.4e-85 319.3 325 55.7
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 1.3e-84 317.4 323 54.2
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 4.5e-77 292.4 324 48.5
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 7.7e-77 291.6 179 82.7
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 5.1e-73 278.9 198 70.7
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 1.5e-69 267.3 157 84.7
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.2e-66 257.7 327 48.6
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 3.9e-65 252.7 186 69.4
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 4.1e-62 242.7 286 42.3
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.6e-61 240.7 213 58.2
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 3.5e-61 239.6 196 63.3
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 2.5e-59 233.4 268 49.3
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.1e-58 230.3 331 42.9
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 4.4e-56 222.6 313 40.6
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 2.2e-55 220.3 147 70.1
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 3.1e-54 216.5 182 59.9
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 1.2e-53 214.5 135 79.3
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 2.6e-48 196.8 133 72.2
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 1.1e-46 191.4 141 67.4
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 7.0e-46 188.7 133 72.2
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 8.6e-44 181.8 146 63.0
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 1.9e-43 180.6 130 73.1
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 2.8e-42 176.8 269 39.4
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 2.0e-40 170.6 180 47.8
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 7.5e-40 168.7 180 51.1
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 2.9e-39 166.8 139 61.9
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 1.4e-38 164.5 114 74.6
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 5.4e-38 162.5 259 37.1
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 7.8e-37 158.7 97 76.3
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 8.0e-34 148.7 155 49.7
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 1.4e-33 147.9 143 54.5
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 8.3e-31 138.7 200 39.5
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.9e-30 137.5 146 47.9
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 3.5e-29 133.3 82 72.0
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 6.0e-29 132.5 129 51.2
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 2.3e-28 130.6 117 56.4
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 1.2e-26 124.8 176 39.8
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 3.6e-26 123.2 128 47.7
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 6.0e-21 105.9 70 75.7
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 2.8e-18 97.1 195 37.4
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 2.0e-16 90.9 80 58.8
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 2.0e-16 90.9 80 58.8
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 3.4e-16 90.1 80 58.8
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 4.3e-11 73.2 122 41.0
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 1.6e-10 71.2 92 48.9
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 4.0e-09 66.6 62 56.5
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 5.8e-08 62.8 53 56.6
SalBow2G0531 Salvia bowleyana HOM05D004465 ORTHO05D351996 2.4e-06 57.4 33 78.8


User provided reference genes

Program Settings