Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 1.8e-146 522.7 289 100.0
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 4.8e-115 418.3 289 81.0
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 4.0e-114 415.2 289 79.9
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 5.3e-114 414.8 305 74.8
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 1.1e-111 407.1 289 80.6
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 1.9e-111 406.4 289 78.2
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 7.1e-111 404.4 296 77.4
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 3.5e-110 402.1 289 77.5
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 1.3e-109 400.2 289 78.2
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 1.3e-109 400.2 308 74.0
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 3.9e-109 398.7 289 78.9
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 3.9e-109 398.7 289 76.8
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 3.9e-109 398.7 289 77.2
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 6.7e-109 397.9 292 77.1
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 6.7e-109 397.9 289 79.6
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 3.3e-108 395.6 287 74.9
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 6.2e-107 391.3 289 76.8
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 6.2e-107 391.3 290 75.9
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 6.9e-106 387.9 287 77.7
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.4e-105 385.6 289 74.7
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.4e-105 385.6 289 74.7
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 7.6e-105 384.4 289 74.4
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 7.6e-105 384.4 287 75.6
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 2.2e-104 382.9 289 73.7
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 3.8e-104 382.1 289 74.7
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 3.8e-104 382.1 289 75.1
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 6.4e-104 381.3 287 74.2
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 8.4e-104 380.9 289 75.1
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.1e-103 380.6 289 73.7
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 1.9e-103 379.8 289 74.7
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.9e-103 379.8 289 73.7
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 2.5e-103 379.4 289 74.7
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 3.2e-103 379.0 291 74.2
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 3.2e-103 379.0 289 73.7
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 4.2e-103 378.6 271 74.5
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 9.3e-103 377.5 289 72.7
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 2.1e-102 376.3 279 74.6
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 2.1e-102 376.3 289 73.0
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 2.7e-102 375.9 287 72.8
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 2.3e-101 372.9 288 74.3
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 6.7e-101 371.3 287 71.1
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 1.9e-100 369.8 290 74.1
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 3.3e-100 369.0 302 69.9
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 1.3e-99 367.1 289 72.3
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 8.2e-99 364.4 289 73.7
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 1.8e-98 363.2 289 73.0
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 3.1e-98 362.5 287 71.1
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 4.0e-98 362.1 289 71.3
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 4.0e-98 362.1 280 73.6
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 5.3e-98 361.7 258 79.1
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 9.0e-98 360.9 241 80.1
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 9.0e-98 360.9 289 70.9
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.5e-97 360.1 288 72.6
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 2.0e-97 359.8 269 74.7
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 3.4e-97 359.0 290 71.7
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 3.4e-97 359.0 289 69.6
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 4.5e-97 358.6 288 72.2
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 5.8e-97 358.2 290 72.1
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 7.6e-97 357.8 289 69.9
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 1.3e-96 357.1 268 72.4
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 1.7e-96 356.7 290 71.0
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 3.8e-96 355.5 289 70.6
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 8.4e-96 354.4 256 75.0
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 8.4e-96 354.4 290 71.7
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 1.1e-95 354.0 287 71.8
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 1.4e-95 353.6 239 81.2
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 1.9e-95 353.2 289 69.9
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 1.9e-95 353.2 297 70.0
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 3.2e-95 352.4 280 72.9
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 5.5e-95 351.7 290 71.0
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 1.2e-94 350.5 289 73.0
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 1.2e-94 350.5 241 78.0
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 1.6e-94 350.1 277 71.5
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 2.7e-94 349.4 284 70.1
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 3.5e-94 349.0 239 78.2
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 3.5e-94 349.0 239 78.2
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 6.0e-94 348.2 239 78.2
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 6.0e-94 348.2 275 71.6
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 7.9e-94 347.8 287 69.3
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 1.3e-93 347.1 241 78.4
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 1.3e-93 347.1 244 77.5
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 1.3e-93 347.1 244 77.5
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 1.3e-93 347.1 318 67.0
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 1.8e-93 346.7 239 78.2
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 1.8e-93 346.7 257 75.9
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 1.8e-93 346.7 241 77.2
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 2.3e-93 346.3 264 73.5
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 6.7e-93 344.7 244 76.6
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 6.7e-93 344.7 244 76.6
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 1.1e-92 344.0 241 78.0
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 1.5e-92 343.6 239 79.1
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 1.5e-92 343.6 260 74.6
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 2.5e-92 342.8 287 67.6
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 3.3e-92 342.4 293 68.9
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 5.7e-92 341.7 279 69.2
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 7.4e-92 341.3 257 74.7
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 7.4e-92 341.3 289 68.5
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 9.7e-92 340.9 239 78.7
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 2.2e-91 339.7 289 68.5
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 3.4e-89 332.4 259 71.4
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 5.9e-89 331.6 287 69.7
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 1.7e-88 330.1 296 66.6
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 1.4e-87 327.0 269 72.5
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 1.2e-86 323.9 291 68.0
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 2.0e-84 316.6 246 73.2
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 6.3e-83 311.6 263 70.7
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 5.3e-82 308.5 288 63.9
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 1.2e-81 307.4 260 68.8
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 7.7e-81 304.7 275 64.7
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 1.2e-78 297.4 211 80.6
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 5.3e-74 282.0 229 71.6
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.4e-71 273.9 278 59.0
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.6e-70 270.4 255 63.1
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.0e-69 267.7 282 58.9
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 5.7e-68 261.9 153 88.9
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 2.8e-67 259.6 153 88.9
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 4.5e-65 252.3 289 56.4
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 1.0e-61 241.1 205 68.3
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 1.7e-56 223.8 283 49.5
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 1.2e-52 211.1 206 55.8
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 7.5e-52 208.4 166 67.5
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 6.3e-51 205.3 125 84.8
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 1.6e-46 190.7 153 68.0
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 4.7e-46 189.1 153 67.3
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 6.1e-46 188.7 289 45.3
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 8.0e-46 188.3 177 63.3
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.0e-40 171.4 166 60.2
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.2e-38 164.5 166 58.4
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 4.7e-38 162.5 166 57.2
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 3.7e-35 152.9 245 40.4
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 5.6e-31 139.0 105 66.7
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.2e-28 131.3 67 92.5
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 3.3e-23 113.2 136 56.6
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 5.6e-23 112.5 139 51.1
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 2.7e-17 93.6 65 69.2
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 3.9e-16 89.7 137 51.1
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 7.3e-15 85.5 145 45.5
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 1.2e-12 78.2 73 63.0
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 2.9e-11 73.6 42 81.0
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 4.6e-09 66.2 172 33.1


User provided reference genes

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