Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g10570 Coffea canephora HOM05D006139 ORTHO05D007681 0.0e+00 1233.0 628 100.0
Hma1.2p1_0412F.1_g147150 Hydrangea macrophylla HOM05D006139 ORTHO05D007681 1.0e-287 993.0 629 78.1
Potri.011G107400 Populus trichocarpa HOM05D006139 ORTHO05D007681 1.2e-280 969.5 628 75.2
Migut.N00440 Erythranthe guttata HOM05D006139 ORTHO05D007681 2.3e-279 965.3 629 75.7
CSS0045945 Camellia sinensis var. sinensis HOM05D006139 ORTHO05D007681 8.6e-279 963.4 629 75.0
MSTRG.17865 Avicennia marina HOM05D006139 ORTHO05D007681 3.3e-278 961.4 629 76.5
Sopen09g036170 Solanum pennellii HOM05D006139 ORTHO05D007681 7.3e-278 960.3 628 75.0
Solyc09g098230.3 Solanum lycopersicum HOM05D006139 ORTHO05D007681 3.6e-277 958.0 628 74.8
SGA_v2.0_scaffold109G31142 Striga asiatica HOM05D006139 ORTHO05D007681 6.4e-274 947.2 632 74.1
Sabra11G0095200 Salix brachista HOM05D006139 ORTHO05D007681 2.3e-271 938.7 636 73.1
Prupe.1G178000 Prunus persica HOM05D006139 ORTHO05D007681 2.5e-270 935.3 629 72.8
TAR365G1167 Trochodendron aralioides HOM05D006139 ORTHO05D007681 5.6e-270 934.1 604 76.7
QL10p044141 Quercus lobata HOM05D006139 ORTHO05D007681 7.3e-270 933.7 662 70.7
TWI38G2388 Tripterygium wilfordii HOM05D006139 ORTHO05D007681 2.1e-269 932.2 628 73.2
GSVIVG01031668001 Vitis vinifera HOM05D006139 ORTHO05D007681 2.8e-269 931.8 628 74.4
Aqoxy2G03950 Aquilegia oxysepala HOM05D006139 ORTHO05D007681 6.2e-269 930.6 630 73.0
Manes.03G099000 Manihot esculenta HOM05D006139 ORTHO05D007681 1.4e-268 929.5 629 71.7
Ciclev10019318m.g Citrus clementina HOM05D006139 ORTHO05D007681 2.9e-266 921.8 629 72.2
MELO3C017678.2 Cucumis melo HOM05D006139 ORTHO05D007681 6.4e-266 920.6 628 71.8
ECA246G3778 Erigeron canadensis HOM05D006139 ORTHO05D007681 8.4e-266 920.2 630 72.5
Sed0017452 Sechium edule HOM05D006139 ORTHO05D007681 1.4e-265 919.5 628 71.3
Eucgr.F03241 Eucalyptus grandis HOM05D006139 ORTHO05D007681 1.6e-264 916.0 628 72.8
Rhsim07G0086500 Rhododendron simsii HOM05D006139 ORTHO05D007681 4.6e-264 914.4 720 65.1
CsaV3_4G003770 Cucumis sativus L. HOM05D006139 ORTHO05D007681 3.0e-263 911.8 628 71.3
Lsat_1_v5_gn_3_24941 Lactuca sativa HOM05D006139 ORTHO05D007681 8.7e-263 910.2 628 70.7
MD13G1278700 Malus domestica HOM05D006139 ORTHO05D007681 8.7e-263 910.2 628 70.9
CANSAT11G1108 Cannabis sativa HOM05D006139 ORTHO05D007681 2.5e-262 908.7 629 70.7
RcHm_v2.0_Chr4g0409801 Rosa chinensis HOM05D006139 ORTHO05D007681 7.3e-262 907.1 628 71.8
Sc22g0003230 Simmondsia chinensis HOM05D006139 ORTHO05D007681 3.6e-261 904.8 627 72.2
PSO675G6876 Papaver somniferum HOM05D006139 ORTHO05D007681 3.1e-260 901.7 627 70.7
FvH4_4g12150 Fragaria vesca HOM05D006139 ORTHO05D007681 3.4e-259 898.3 628 70.4
FAN12G2778 Fragaria x ananassa HOM05D006139 ORTHO05D007681 4.5e-259 897.9 628 70.4
PSO017G2886 Papaver somniferum HOM05D006139 ORTHO05D007681 2.9e-258 895.2 627 70.5
CiPaw.01G108300 Carya illinoinensis HOM05D006139 ORTHO05D007681 4.9e-258 894.4 629 71.1
Thecc.07G123700 Theobroma cacao HOM05D006139 ORTHO05D007681 5.4e-257 891.0 629 70.3
Duzib213G0841 Durio zibethinus HOM05D006139 ORTHO05D007681 2.7e-256 888.6 629 70.6
Lalb_Chr06g0164661 Lupinus albus HOM05D006139 ORTHO05D007681 1.1e-252 876.7 630 68.7
Nn3g20967 Nelumbo nucifera HOM05D006139 ORTHO05D007681 4.5e-251 871.3 609 70.3
Gohir.A01G052100 Gossypium hirsutum HOM05D006139 ORTHO05D007681 9.9e-251 870.2 628 69.4
Gorai.002G052100 Gossypium raimondii HOM05D006139 ORTHO05D007681 5.5e-249 864.4 628 68.9
arahy.Tifrunner.gnm1.ann1.46LBLY Arachis hypogaea HOM05D006139 ORTHO05D007681 1.2e-248 863.2 627 68.3
Glyma.20G248800 Glycine max HOM05D006139 ORTHO05D007681 3.9e-247 858.2 635 67.1
Thhalv10007085m.g Eutrema salsugineum HOM05D006139 ORTHO05D007681 9.0e-244 847.0 629 66.8
Sp1g15110 Schrenkiella parvula HOM05D006139 ORTHO05D007681 9.0e-244 847.0 628 67.0
Lj5g0023092 Lotus japonicus HOM05D006139 ORTHO05D007681 3.4e-243 845.1 627 66.3
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 5.8e-243 844.3 628 67.2
AT1G16970 Arabidopsis thaliana HOM05D006139 ORTHO05D007681 7.6e-243 844.0 629 66.3
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 7.6e-243 844.0 628 66.9
Psat6g243280 Pisum sativum HOM05D006139 ORTHO05D007681 2.9e-242 842.0 629 65.0
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 2.5e-241 839.0 628 66.6
Carub.0001s1670 Capsella rubella HOM05D006139 ORTHO05D007681 3.2e-241 838.6 627 66.0
A06p12870 Brassica napus HOM05D006139 ORTHO05D007681 2.7e-240 835.5 628 66.1
PGR031G2404 Punica granatum HOM05D006139 ORTHO05D007681 6.0e-240 834.3 629 65.8
Medtr1g116980 Medicago truncatula HOM05D006139 ORTHO05D007681 1.8e-239 832.8 626 65.0
CARHR017480 Cardamine hirsuta HOM05D006139 ORTHO05D007681 5.1e-239 831.2 629 66.1
VMungo0720G1636 Vigna mungo HOM05D006139 ORTHO05D007681 5.7e-238 827.8 630 65.1
CAN.G710.40 Capsicum annuum HOM05D006139 ORTHO05D007681 3.7e-237 825.1 640 66.2
Gohir.D01G041500 Gossypium hirsutum HOM05D006139 ORTHO05D007681 1.5e-235 819.7 589 69.4
Zm00001eb116810 Zea mays HOM05D006139 ORTHO05D007681 1.5e-235 819.7 631 64.3
THA.LOC104812308 Tarenaya hassleriana HOM05D006139 ORTHO05D007681 2.0e-235 819.3 627 65.2
Phvul.007G001600 Phaseolus vulgaris HOM05D006139 ORTHO05D007681 2.6e-235 818.9 629 65.8
Hund19684 Selenicereus undatus HOM05D006139 ORTHO05D007681 1.3e-234 816.6 628 66.4
Dinv44237 Davidia involucrata HOM05D006139 ORTHO05D007681 3.8e-234 815.1 494 80.4
FAN12G0395 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.9e-233 812.8 640 65.0
FAN07G2792 Fragaria x ananassa HOM05D006139 ORTHO05D007681 7.2e-233 810.8 639 64.6
FAN17G0552 Fragaria x ananassa HOM05D006139 ORTHO05D007681 9.3e-233 810.4 628 65.6
Lj4A728T41 Lonicera japonica HOM05D006139 ORTHO05D007681 1.3e-229 800.0 596 69.0
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 1.1e-228 797.0 631 64.2
BraA06t24447Z Brassica rapa HOM05D006139 ORTHO05D007681 5.9e-227 791.2 628 63.7
ATR0609G005 Amborella trichopoda HOM05D006139 ORTHO05D007681 2.2e-226 789.3 632 63.9
AUR62018029 Chenopodium quinoa HOM05D006139 ORTHO05D007681 2.2e-221 772.7 643 62.1
arahy.Tifrunner.gnm1.ann1.JAL8JD Arachis hypogaea HOM05D006139 ORTHO05D007681 3.7e-221 771.9 637 63.3
vmacro13984 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 4.5e-219 765.0 740 56.6
Nitab4.5_0001687g0050 Nicotiana tabacum HOM05D006139 ORTHO05D007681 8.8e-215 750.7 590 66.6
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 7.4e-214 747.7 646 62.4
MBI07_g00628_MAGBIO Magnolia biondii HOM05D006139 ORTHO05D007681 1.8e-212 743.0 628 61.1
AUR62003718 Chenopodium quinoa HOM05D006139 ORTHO05D007681 2.0e-211 739.6 610 61.8
Haze_11079 Corylus avellana HOM05D006139 ORTHO05D007681 2.6e-211 739.2 629 62.5
Nitab4.5_0001526g0130 Nicotiana tabacum HOM05D006139 ORTHO05D007681 2.6e-206 722.6 646 61.3
Peaxi162Scf00286g00443 Petunia axillaris HOM05D006139 ORTHO05D007681 3.7e-205 718.8 629 62.5
ClCG07G016640 Citrullus lanatus HOM05D006139 ORTHO05D007681 5.9e-187 658.3 653 56.7
Oeu013397.2 Olea europaea HOM05D006139 ORTHO05D007681 8.9e-183 644.4 403 78.7
Mapoly0113s0020 Marchantia polymorpha HOM05D006139 ORTHO05D007681 3.5e-171 605.9 626 49.2
HPP92_015930 Vanilla planifolia HOM05D006139 ORTHO05D007681 9.2e-164 581.3 438 66.4
SMO361G0769 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 2.1e-160 570.1 569 50.3
SMO361G0513 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 2.8e-160 569.7 569 50.4
CDE02G2779 Ceratophyllum demersum HOM05D006139 ORTHO05D007681 7.8e-147 525.0 441 61.2
AagrBONN_evm.TU.Sc2ySwM_228.1556 Anthoceros agrestis HOM05D006139 ORTHO05D007681 9.0e-143 511.5 638 44.2
Cpa.g.sc77.50 Carica papaya HOM05D006139 ORTHO05D007681 4.6e-139 499.2 542 50.0
CBR_g19434 Chara braunii HOM05D006139 ORTHO05D007681 2.0e-134 483.8 626 41.7
Pp3c18_7140 Physcomitrium patens HOM05D006139 ORTHO05D007681 1.1e-132 478.0 625 43.5
Aa31LG7G1410 Aethionema arabicum HOM05D006139 ORTHO05D007681 3.1e-127 459.9 628 43.6
Atru.chr2.2053 Acer truncatum HOM05D006139 ORTHO05D007681 2.6e-126 456.8 309 72.5
PGSC0003DMG400014069 Solanum tuberosum HOM05D006139 ORTHO05D007681 5.8e-126 455.7 292 78.1
TPR.G8879 Trifolium pratense HOM05D006139 ORTHO05D007681 2.8e-112 410.2 295 67.8
Atru.chr2.2052 Acer truncatum HOM05D006139 ORTHO05D007681 4.1e-111 406.4 272 75.0
SHI27652 Sapria himalayana HOM05D006139 ORTHO05D007681 1.2e-110 404.8 359 58.8
TPR.G8868 Trifolium pratense HOM05D006139 ORTHO05D007681 2.0e-105 387.5 279 67.4
SEGI_35314 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 6.3e-88 329.3 274 60.6
DCAR_005496 Daucus carota HOM05D006139 ORTHO05D007681 7.7e-86 322.4 232 69.8
Ca_11423_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 2.5e-84 317.4 244 66.0
TPR.G8907 Trifolium pratense HOM05D006139 ORTHO05D007681 9.4e-84 315.5 225 68.4
DCAR_005495 Daucus carota HOM05D006139 ORTHO05D007681 6.1e-83 312.8 245 67.8
unitig_578.g15953 Utricularia gibba HOM05D006139 ORTHO05D007681 2.2e-72 277.7 248 58.9
Cre13.g607500 Chlamydomonas reinhardtii HOM05D006139 ORTHO05D007681 8.0e-59 232.6 710 29.2
Os07g0184900 Oryza sativa ssp. japonica HOM05D006139 ORTHO05D007681 2.0e-57 228.0 158 68.4
Ah.03g143030 Amaranthus hybridus HOM05D006139 ORTHO05D007681 6.4e-56 223.0 186 61.3
FAN22G0061 Fragaria x ananassa HOM05D006139 ORTHO05D007681 7.8e-54 216.1 170 62.9
unitig_578.g15954 Utricularia gibba HOM05D006139 ORTHO05D004041 7.8e-54 216.1 170 64.1
Ca_11425_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 1.6e-46 191.8 134 72.4
Hund20183 Selenicereus undatus HOM05D006139 ORTHO05D007681 5.6e-44 183.3 189 55.6
arahy.Tifrunner.gnm1.ann1.6RHH59 Arachis hypogaea HOM05D006139 ORTHO05D007681 4.0e-42 177.2 130 65.4
Cfa021664 Carpinus fangiana HOM05D006139 ORTHO05D007681 3.8e-40 170.6 604 26.3
CANSAT78G0600 Cannabis sativa HOM05D006139 ORTHO05D007681 9.0e-34 149.4 118 57.6
Ca_11424_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 2.0e-33 148.3 106 65.1
AUR62043732 Chenopodium quinoa HOM05D006139 ORTHO05D007681 1.6e-27 128.6 92 68.5
SEGI_31905 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 3.9e-21 107.5 74 63.5
Ah.03g143010 Amaranthus hybridus HOM05D006139 ORTHO05D007681 3.3e-20 104.4 128 45.3
MCO14G338 Micromonas commoda HOM05D006139 ORTHO05D007681 4.3e-20 104.0 414 25.1
CARHR154100 Cardamine hirsuta HOM05D006139 ORTHO05D007681 9.0e-18 96.3 66 69.7
BolC4t22161H Brassica oleracea HOM05D006139 ORTHO05D007681 2.6e-17 94.7 67 64.2
HanXRQChr13g0406711 Helianthus annuus HOM05D006139 ORTHO05D007681 3.8e-16 90.9 57 73.7
Zm00001eb114470 Zea mays HOM05D006139 ORTHO05D007681 1.3e-13 82.4 64 62.5
vmacro12608 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 1.9e-12 78.6 46 84.8
Potri.006G132501 Populus trichocarpa HOM05D006139 ORTHO05D007681 7.4e-12 76.6 77 46.8
Eucgr.L02132 Eucalyptus grandis HOM05D006139 ORTHO05D007681 1.3e-11 75.9 48 77.1
SEGI_11325 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 8.2e-11 73.2 64 54.7
Dinv25612 Davidia involucrata HOM05D000447 ORTHO05D007681 1.1e-07 62.8 123 35.8


User provided reference genes

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