Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g01680 Coffea canephora HOM05D003934 ORTHO05D005108 1.1e-287 992.6 513 100.0
Nitab4.5_0000714g0110 Nicotiana tabacum HOM05D003934 ORTHO05D005108 1.0e-240 836.6 514 82.5
CSS0014973 Camellia sinensis var. sinensis HOM05D003934 ORTHO05D005108 1.9e-236 822.4 513 81.7
CAN.G108.66 Capsicum annuum HOM05D003934 ORTHO05D005108 1.3e-235 819.7 514 80.5
PGSC0003DMG400009079 Solanum tuberosum HOM05D003934 ORTHO05D005108 6.2e-235 817.4 514 82.3
Actinidia34211 Actinidia chinensis HOM05D003934 ORTHO05D005108 3.1e-234 815.1 513 78.9
Sopen03g023200 Solanum pennellii HOM05D003934 ORTHO05D005108 3.1e-234 815.1 514 82.1
Hma1.2p1_1188F.1_g265250 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 5.3e-234 814.3 513 77.2
Solyc03g083430.3 Solanum lycopersicum HOM05D003934 ORTHO05D005108 5.8e-233 810.8 514 81.7
Actinidia08639 Actinidia chinensis HOM05D003934 ORTHO05D005108 1.3e-232 809.7 513 78.8
Manes.06G159600 Manihot esculenta HOM05D003934 ORTHO05D005108 1.9e-231 805.8 513 79.9
GSVIVG01038711001 Vitis vinifera HOM05D003934 ORTHO05D005108 1.9e-231 805.8 513 77.2
Psat5g078160 Pisum sativum HOM05D003934 ORTHO05D005108 2.1e-230 802.4 517 79.3
Lj1C1015T5 Lonicera japonica HOM05D003934 ORTHO05D005108 3.5e-230 801.6 513 80.5
arahy.Tifrunner.gnm1.ann1.WX46MS Arachis hypogaea HOM05D003934 ORTHO05D005108 1.0e-229 800.0 514 78.8
CiPaw.05G251900 Carya illinoinensis HOM05D003934 ORTHO05D005108 1.0e-229 800.0 514 79.8
arahy.Tifrunner.gnm1.ann1.W6P66N Arachis hypogaea HOM05D003934 ORTHO05D005108 1.8e-229 799.3 514 78.6
MD01G1219700 Malus domestica HOM05D003934 ORTHO05D005108 2.3e-229 798.9 513 78.9
Phvul.009G053700 Phaseolus vulgaris HOM05D003934 ORTHO05D005108 2.3e-229 798.9 513 78.9
QL09p009520 Quercus lobata HOM05D003934 ORTHO05D005108 3.0e-229 798.5 513 78.4
MD07G1290300 Malus domestica HOM05D003934 ORTHO05D005108 3.9e-229 798.1 513 78.9
MSTRG.8665 Avicennia marina HOM05D003934 ORTHO05D005108 5.1e-229 797.7 515 77.5
Potri.012G012800 Populus trichocarpa HOM05D003934 ORTHO05D005108 2.5e-228 795.4 513 79.3
Prupe.2G311500 Prunus persica HOM05D003934 ORTHO05D005108 1.6e-227 792.7 515 79.2
Thecc.03G196100 Theobroma cacao HOM05D003934 ORTHO05D005108 2.8e-227 792.0 513 78.6
Potri.015G017200 Populus trichocarpa HOM05D003934 ORTHO05D005108 3.7e-227 791.6 513 78.0
PGR042G0302 Punica granatum HOM05D003934 ORTHO05D005108 4.8e-227 791.2 513 79.3
Lalb_Chr08g0240341 Lupinus albus HOM05D003934 ORTHO05D005108 6.3e-227 790.8 514 78.4
Duzib205G1942 Durio zibethinus HOM05D003934 ORTHO05D005108 8.2e-227 790.4 513 78.2
Sabra15G0013200 Salix brachista HOM05D003934 ORTHO05D005108 8.2e-227 790.4 513 78.2
COL.COLO4_11261 Corchorus olitorius HOM05D003934 ORTHO05D005108 1.1e-226 790.0 513 78.8
Duzib068G1159 Durio zibethinus HOM05D003934 ORTHO05D005108 1.1e-226 790.0 513 78.8
Lj1g0022752 Lotus japonicus HOM05D003934 ORTHO05D005108 2.4e-226 788.9 513 78.0
Medtr3g091250 Medicago truncatula HOM05D003934 ORTHO05D005108 2.4e-226 788.9 513 78.2
TAR375G0202 Trochodendron aralioides HOM05D003934 ORTHO05D005108 6.9e-226 787.3 513 78.4
Eucgr.A01467 Eucalyptus grandis HOM05D003934 ORTHO05D005108 9.0e-226 786.9 513 78.4
CANSAT11G0158 Cannabis sativa HOM05D003934 ORTHO05D005108 1.2e-225 786.6 513 76.8
Glyma.04G236800 Glycine max HOM05D003934 ORTHO05D005108 1.2e-225 786.6 513 78.8
Glyma.06G127500 Glycine max HOM05D003934 ORTHO05D005108 1.5e-225 786.2 513 78.8
Oeu041045.2 Olea europaea HOM05D003934 ORTHO05D005108 7.7e-225 783.9 562 73.8
Migut.F00226 Erythranthe guttata HOM05D003934 ORTHO05D005108 1.0e-224 783.5 515 75.7
CsaV3_3G027880 Cucumis sativus L. HOM05D003934 ORTHO05D005108 1.7e-224 782.7 513 78.4
Gorai.006G201100 Gossypium raimondii HOM05D003934 ORTHO05D005108 1.9e-223 779.2 513 78.2
Nn3g19008 Nelumbo nucifera HOM05D003934 ORTHO05D005108 2.5e-223 778.9 513 77.8
Hund11672 Selenicereus undatus HOM05D003934 ORTHO05D005108 3.2e-223 778.5 511 75.7
THA.LOC104820263 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 3.2e-223 778.5 513 77.4
Gohir.D09G179100 Gossypium hirsutum HOM05D003934 ORTHO05D005108 7.2e-223 777.3 513 78.0
Lsat_1_v5_gn_9_58300 Lactuca sativa HOM05D003934 ORTHO05D005108 9.4e-223 776.9 507 75.1
Sed0008190 Sechium edule HOM05D003934 ORTHO05D005108 1.6e-222 776.2 513 78.0
Gohir.A09G184300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 3.6e-222 775.0 514 77.6
RcHm_v2.0_Chr1g0331941 Rosa chinensis HOM05D003934 ORTHO05D005108 2.3e-221 772.3 513 75.0
Gohir.D11G243500 Gossypium hirsutum HOM05D003934 ORTHO05D005108 3.9e-221 771.5 513 77.0
Ciclev10004777m.g Citrus clementina HOM05D003934 ORTHO05D005108 2.5e-220 768.8 515 76.3
Gohir.A11G232300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 2.5e-220 768.8 513 77.2
EL10Ac3g05301 Beta vulgaris HOM05D003934 ORTHO05D005108 2.8e-219 765.4 514 75.9
SGA_v2.0_scaffold44G16789 Striga asiatica HOM05D003934 ORTHO05D005108 6.3e-219 764.2 515 74.0
Aa31LG11G7140 Aethionema arabicum HOM05D003934 ORTHO05D005108 1.8e-218 762.7 513 75.6
THA.LOC104816810 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 2.6e-217 758.8 513 76.2
Carub.0006s0504 Capsella rubella HOM05D003934 ORTHO05D005108 3.4e-217 758.4 513 72.3
AL6G16130 Arabidopsis lyrata HOM05D003934 ORTHO05D005108 4.5e-217 758.1 513 73.9
FAN01G0480 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.9e-217 757.7 513 73.1
FAN06G1603 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.9e-217 757.7 513 72.9
FAN03G1965 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.7e-216 756.1 513 72.7
Peaxi162Scf00550g00530 Petunia axillaris HOM05D003934 ORTHO05D005108 1.7e-216 756.1 514 78.0
CDE10G0188 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 3.8e-216 755.0 513 76.0
ECA232G2652 Erigeron canadensis HOM05D003934 ORTHO05D005108 7.2e-215 750.7 521 72.6
Sp6g36730 Schrenkiella parvula HOM05D003934 ORTHO05D005108 2.3e-213 745.7 513 73.3
HPP92_021551 Vanilla planifolia HOM05D003934 ORTHO05D005108 2.3e-213 745.7 513 74.5
CARHR206870 Cardamine hirsuta HOM05D003934 ORTHO05D005108 1.5e-212 743.0 515 74.2
Thhalv10013305m.g Eutrema salsugineum HOM05D003934 ORTHO05D005108 7.4e-212 740.7 513 70.6
AT5G06160 Arabidopsis thaliana HOM05D003934 ORTHO05D005108 9.7e-212 740.3 513 71.7
HPP92_021541 Vanilla planifolia HOM05D003934 ORTHO05D005108 3.1e-210 735.3 513 73.3
AUR62006111 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.2e-208 729.2 519 71.5
PSO063G5737 Papaver somniferum HOM05D003934 ORTHO05D005108 8.8e-205 717.2 520 71.7
PSO170G4033 Papaver somniferum HOM05D003934 ORTHO05D005108 3.3e-204 715.3 520 71.3
AUR62019377 Chenopodium quinoa HOM05D003934 ORTHO05D005108 4.4e-204 714.9 583 64.3
C02p02610 Brassica napus HOM05D003934 ORTHO05D005108 5.7e-204 714.5 513 72.1
BraA02t04872Z Brassica rapa HOM05D003934 ORTHO05D005108 2.2e-203 712.6 513 71.9
ATR0602G008 Amborella trichopoda HOM05D003934 ORTHO05D005108 8.2e-203 710.7 514 71.2
Atru.chr1.153 Acer truncatum HOM05D003934 ORTHO05D005108 1.8e-202 709.5 495 75.2
FvH4_7g06390 Fragaria vesca HOM05D003934 ORTHO05D005108 4.1e-202 708.4 513 70.2
BolC2t06227H Brassica oleracea HOM05D003934 ORTHO05D005108 5.3e-202 708.0 513 71.5
Ca_16696_v3 Cicer arietinum L. HOM05D003934 ORTHO05D005108 5.3e-202 708.0 543 70.0
TWI14G0523 Tripterygium wilfordii HOM05D003934 ORTHO05D005108 9.1e-202 707.2 513 71.5
CDE10G0405 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 2.6e-201 705.7 513 72.3
Os03g0717600 Oryza sativa ssp. japonica HOM05D003934 ORTHO05D005108 2.0e-193 679.5 515 70.1
Mapoly0116s0041 Marchantia polymorpha HOM05D003934 ORTHO05D005108 8.5e-192 674.1 515 68.3
HanXRQChr09g0252981 Helianthus annuus HOM05D003934 ORTHO05D005108 1.5e-191 673.3 465 72.3
Cpa.g.sc3.69 Carica papaya HOM05D003934 ORTHO05D005108 2.5e-191 672.5 513 69.8
C03p02940 Brassica napus HOM05D003934 ORTHO05D005108 8.0e-190 667.5 514 64.4
BcaB01g05979 Brassica carinata HOM05D003934 ORTHO05D005108 1.4e-189 666.8 514 64.6
A03p02600 Brassica napus HOM05D003934 ORTHO05D005108 6.8e-189 664.5 517 65.6
BolC3t12849H Brassica oleracea HOM05D003934 ORTHO05D005108 4.4e-188 661.8 518 63.9
FAN24G3520 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.1e-186 655.6 533 64.4
BraA03t09621Z Brassica rapa HOM05D003934 ORTHO05D005108 2.0e-185 652.9 517 64.8
vmacro06541 Vaccinium macrocarpon HOM05D003934 ORTHO05D005108 1.4e-181 640.2 515 65.8
Pp3c5_21100 Physcomitrium patens HOM05D003934 ORTHO05D005108 1.8e-181 639.8 524 64.7
Sabra12G0018300 Salix brachista HOM05D003934 ORTHO05D005108 2.7e-177 625.9 553 62.6
BcaB05g21680 Brassica carinata HOM05D003934 ORTHO05D005108 2.0e-172 609.8 790 47.1
FvH4_1g22860 Fragaria vesca HOM05D003934 ORTHO05D005108 5.8e-172 608.2 515 65.0
FAN26G2519 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.2e-171 606.3 515 64.5
FAN23G2330 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.0e-168 597.4 515 63.3
Nitab4.5_0007081g0020 Nicotiana tabacum HOM05D003934 ORTHO05D005108 4.4e-164 582.0 514 62.6
FAN10G3094 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.7e-163 578.9 524 58.6
Ah.07g205840 Amaranthus hybridus HOM05D003934 ORTHO05D005108 7.1e-162 574.7 513 59.5
FAN19G2010 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.1e-158 563.1 515 62.1
Oeu041318.2 Olea europaea HOM05D003934 ORTHO05D005108 3.6e-158 562.4 513 64.1
SMO119G0296 Selaginella moellendorffii HOM05D003934 ORTHO05D005108 6.2e-158 561.6 521 60.5
Haze_00188 Corylus avellana HOM05D003934 ORTHO05D005108 8.4e-155 551.2 547 58.5
Cfa016252 Carpinus fangiana HOM05D003934 ORTHO05D005108 2.1e-153 546.6 513 59.1
ClCG05G008860 Citrullus lanatus HOM05D003934 ORTHO05D005108 7.3e-151 538.1 513 59.6
HanXRQChr09g0252971 Helianthus annuus HOM05D003934 ORTHO05D005108 1.4e-149 533.9 551 55.0
FAN18G2200 Fragaria x ananassa HOM05D003934 ORTHO05D005108 9.3e-146 521.2 416 63.7
Gorai.007G258600 Gossypium raimondii HOM05D003934 ORTHO05D005108 7.3e-143 511.5 367 71.4
SalBow4G2493 Salvia bowleyana HOM05D003934 ORTHO05D005108 4.4e-140 502.3 515 54.2
SalBow4G2054 Salvia bowleyana HOM05D003934 ORTHO05D005108 1.3e-139 500.7 515 54.2
FvH4_7g05370 Fragaria vesca HOM05D003934 ORTHO05D005108 2.1e-137 493.4 539 53.8
Sc25g0000870 Simmondsia chinensis HOM05D003934 ORTHO05D005108 6.0e-137 491.9 368 69.8
Zm00001eb156600 Zea mays HOM05D003934 ORTHO05D005108 3.0e-136 489.6 384 70.6
PSO782G1765 Papaver somniferum HOM05D003934 ORTHO05D005108 1.7e-131 473.8 523 51.1
Cre06.g297750 Chlamydomonas reinhardtii HOM05D003934 ORTHO05D005108 4.2e-130 469.2 557 47.4
FAN28G1126 Fragaria x ananassa HOM05D003934 ORTHO05D005108 4.8e-126 455.7 501 54.1
FAN01G0659 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.1e-125 454.5 478 54.4
FvH4_5g28470 Fragaria vesca HOM05D003934 ORTHO05D005108 2.2e-123 446.8 484 52.7
MCO08G102 Micromonas commoda HOM05D003934 ORTHO05D005108 8.4e-123 444.9 516 51.0
FAN27G0411 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.2e-122 443.0 442 56.3
TPR.G17291 Trifolium pratense HOM05D003934 ORTHO05D005108 3.5e-121 439.5 293 74.4
FAN10G2167 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.0e-112 411.4 468 50.9
MBI07_g07099_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 3.3e-111 406.4 336 63.1
FAN10G1096 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.6e-110 404.1 461 50.8
FvH4_2g12040 Fragaria vesca HOM05D003934 ORTHO05D005108 4.1e-109 399.4 419 52.7
CBR_g4095 Chara braunii HOM05D003934 ORTHO05D005108 2.6e-108 396.7 520 43.3
Prupe.2G260300 Prunus persica HOM05D003934 ORTHO05D005108 3.3e-103 379.8 430 55.1
AUR62019431 Chenopodium quinoa HOM05D003934 ORTHO05D005108 6.3e-102 375.6 418 50.5
AUR62034796 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.4e-98 364.4 440 48.4
Haze_26996 Corylus avellana HOM05D003934 ORTHO05D005108 4.4e-95 352.8 554 39.7
PRCOL_00004948 Prasinoderma coloniale HOM05D003934 ORTHO05D005108 5.7e-95 352.4 528 40.7
AUR62031013 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.4e-93 347.1 396 50.8
Aqoxy1G00997 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 5.3e-93 345.9 513 44.1
AagrBONN_evm.TU.Sc2ySwM_368.1804 Anthoceros agrestis HOM05D003934 ORTHO05D005108 8.5e-91 338.6 295 58.3
DCAR_026768 Daucus carota HOM05D003934 ORTHO05D005108 1.7e-86 324.3 232 69.4
ATR0602G148 Amborella trichopoda HOM05D003934 ORTHO05D005108 1.9e-82 310.8 182 87.4
DCAR_009017 Daucus carota HOM05D003934 ORTHO05D005108 2.3e-80 303.9 183 81.4
Aqoxy1G00994 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 3.0e-72 276.9 480 38.3
SEGI_10674 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 1.5e-71 274.6 130 93.8
AUR62007347 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.7e-70 271.2 369 45.3
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 1.1e-69 268.5 546 34.8
MBI07_g07098_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 5.4e-53 213.0 133 81.2
SEGI_13482 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 4.7e-49 199.9 178 52.8
SEGI_10754 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 1.2e-44 185.3 131 71.0
Sp5g08830 Schrenkiella parvula HOM05D003934 ORTHO05D005108 4.3e-42 176.8 257 46.3
Aqoxy2G03740 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 1.2e-41 175.3 124 64.5
SEGI_13646 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 3.0e-35 154.1 98 78.6
BcaC08g44628 Brassica carinata HOM05D003934 ORTHO05D019879 1.2e-28 132.1 491 26.9
C06p21480 Brassica napus HOM05D003934 ORTHO05D019879 1.2e-28 132.1 491 26.9
BolC6t37330H Brassica oleracea HOM05D003934 ORTHO05D019879 1.3e-27 128.6 495 26.3
BraA07t29851Z Brassica rapa HOM05D003934 ORTHO05D019879 1.5e-26 125.2 492 26.4
AUR62031016 Chenopodium quinoa HOM05D003934 ORTHO05D005108 5.6e-26 123.2 113 50.4
A07p21690 Brassica napus HOM05D003934 ORTHO05D019879 6.9e-24 116.3 173 41.6
SEGI_36975 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 4.5e-23 113.6 97 51.5
SEGI_00747 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 3.5e-20 104.0 100 49.0
SEGI_09691 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 3.5e-20 104.0 100 49.0
BcaB02g07780 Brassica carinata HOM05D003934 ORTHO05D019879 1.3e-17 95.5 132 43.9
Aqoxy1G01000 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 3.1e-16 90.9 61 68.9
QL03p031079 Quercus lobata HOM05D003851 ORTHO05D004072 2.0e-15 88.2 75 60.0
QL03p031464 Quercus lobata HOM05D003851 ORTHO05D004072 2.0e-15 88.2 75 60.0
HanXRQChr09g0252591 Helianthus annuus HOM05D003934 ORTHO05D019879 1.1e-13 82.4 50 76.0
FAN07G2332 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.4e-13 81.3 119 44.5
FAN07G1716 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.1e-10 72.4 37 89.2
Sabra11G0089700 Salix brachista HOM05D001236 ORTHO05D001090 4.3e-10 70.5 54 66.7
Hma1.2p1_1973F.1_g309600 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 7.4e-10 69.7 32 90.6
Gorai.005G191100 Gossypium raimondii HOM05D003934 ORTHO05D005108 1.6e-09 68.6 58 56.9
SEGI_10710 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 2.4e-08 64.7 71 53.5
AUR62031015 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.0e-06 59.3 69 43.5
Gorai.006G016000 Gossypium raimondii HOM05D003934 ORTHO05D047738 2.2e-06 58.2 58 56.9
Zm00001eb360440 Zea mays HOM05D004310 ORTHO05D005403 2.2e-06 58.2 64 53.1
BcaC01g02515 Brassica carinata HOM05D012846 ORTHO05D039543 4.9e-06 57.0 42 64.3
C03p63990 Brassica napus HOM05D012846 ORTHO05D039543 4.9e-06 57.0 42 64.3
Gohir.D05G037550 Gossypium hirsutum HOM05D001252 ORTHO05D047738 6.5e-06 56.6 40 75.0
CAN.G986.11 Capsicum annuum HOM05D004310 ORTHO05D005403 8.4e-06 56.2 65 53.8
Zm00001eb156640 Zea mays HOM05D004310 ORTHO05D005403 8.4e-06 56.2 63 52.4


User provided reference genes

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