Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1893.2 958 100.0
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1585.9 962 81.7
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1584.7 962 83.0
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1582.8 960 82.9
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1581.2 960 83.0
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1575.5 964 81.6
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1575.1 962 81.4
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1569.7 959 81.5
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1568.5 960 81.6
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1568.1 976 80.6
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1566.2 912 83.2
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1561.6 966 80.2
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1561.6 962 79.8
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1560.8 959 82.0
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1560.8 960 81.8
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1557.0 962 79.5
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1552.0 911 82.8
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1551.6 981 78.9
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1550.8 911 82.2
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1550.4 964 80.7
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1548.9 959 81.2
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1546.9 964 79.8
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1545.0 959 81.6
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1541.6 957 80.4
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1539.2 984 79.0
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1538.5 915 80.4
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1537.7 958 81.3
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1536.2 959 80.4
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1535.4 960 79.8
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1535.0 960 78.5
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1534.2 962 80.5
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1533.1 954 80.8
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1532.7 959 80.6
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1531.5 911 80.7
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1529.6 961 79.5
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1529.2 962 79.5
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1529.2 955 81.5
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1526.5 959 79.6
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1525.8 959 79.6
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1525.0 959 79.7
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1523.8 958 78.9
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1523.5 956 79.8
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1523.5 959 79.4
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1523.1 959 79.4
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1522.7 957 79.3
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1522.7 959 80.1
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1522.7 968 79.9
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1522.3 959 79.4
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1521.9 963 80.9
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1521.5 965 80.0
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1521.5 960 79.5
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1518.8 958 80.0
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1517.3 968 78.9
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1516.5 957 79.2
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1515.4 959 78.8
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1515.4 960 79.1
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1515.4 955 79.3
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1514.2 962 79.5
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1512.7 958 79.0
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1510.4 960 77.9
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1510.0 958 79.3
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1509.6 963 79.1
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1505.7 959 78.6
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1505.3 961 78.7
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1500.0 918 77.9
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1499.6 965 78.9
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1494.9 964 78.1
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1494.6 960 77.4
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1492.2 960 77.6
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1491.1 960 77.4
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1490.3 964 77.9
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1488.4 1184 66.5
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1484.5 959 79.4
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1481.1 959 77.5
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1478.8 919 78.8
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1468.8 965 77.1
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1462.2 987 74.5
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1458.7 910 80.5
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1455.7 958 77.2
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1450.6 961 76.0
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1450.6 961 75.8
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1449.9 958 76.2
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1447.6 967 76.2
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1447.2 958 75.8
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1444.5 960 75.4
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1428.3 829 83.2
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1427.2 844 81.6
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1419.8 965 72.1
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1416.7 958 72.0
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1412.5 972 73.7
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1409.4 967 74.0
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1409.0 985 73.3
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1407.1 985 73.3
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1407.1 985 73.3
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1402.5 968 72.9
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1400.6 962 73.4
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1397.1 971 73.6
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1388.2 981 72.7
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1387.9 917 75.0
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1387.1 953 73.5
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1385.9 978 72.6
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1382.5 955 72.1
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1365.9 921 73.1
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1364.4 956 70.4
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1362.8 967 72.8
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1357.0 956 68.8
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1323.1 909 69.2
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1320.1 905 72.0
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1317.4 956 68.8
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1299.3 785 82.5
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1297.7 786 80.9
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1246.1 921 65.7
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1241.1 726 83.1
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1216.1 938 65.4
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1182.2 786 71.2
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1177.2 687 83.8
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1146.0 991 60.2
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1122.5 981 57.5
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 0.0e+00 1110.5 964 60.4
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1110.1 963 59.5
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 0.0e+00 1076.6 725 76.8
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 4.8e-289 998.0 663 75.6
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 7.0e-280 967.6 786 60.4
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 2.0e-274 949.5 673 74.3
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 4.0e-267 925.2 593 78.2
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.6e-252 875.5 561 75.2
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 8.1e-236 821.2 521 77.4
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 1.3e-225 787.3 598 67.4
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 1.1e-211 741.1 441 85.7
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 5.8e-210 735.3 499 72.1
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 7.2e-184 648.7 408 82.6
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 1.2e-183 647.9 1035 38.4
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.6e-181 640.2 386 80.6
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 5.5e-152 542.7 417 64.0
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 2.7e-146 523.9 410 61.2
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 3.6e-143 513.5 821 37.8
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 3.1e-118 430.6 253 79.4
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 8.4e-116 422.5 223 89.2
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 1.1e-115 422.2 480 51.7
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 9.2e-115 419.1 1052 28.1
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.4e-102 378.6 851 32.0
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 4.6e-98 363.6 279 64.5
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 2.5e-96 357.8 249 69.1
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 1.0e-89 335.9 365 46.0
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 1.8e-86 325.1 253 62.5
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 1.8e-86 325.1 253 62.5
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 1.8e-78 298.5 245 63.7
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 1.3e-60 239.2 148 77.7
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 3.4e-48 198.0 174 50.0
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 4.5e-45 187.6 240 46.7
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 1.5e-43 182.6 159 54.7
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 1.5e-43 182.6 159 54.7
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 1.2e-42 179.5 103 81.6
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 3.0e-41 174.9 169 50.9
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 4.4e-40 171.0 138 56.5
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 7.5e-40 170.2 222 46.4
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 9.8e-40 169.9 117 67.5
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 1.7e-39 169.1 99 80.8
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 3.5e-37 161.4 141 49.6
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 2.9e-36 158.3 111 69.4
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.2e-35 154.5 76 92.1
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.2e-34 152.9 76 90.8
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.6e-34 152.5 75 93.3
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 4.7e-34 151.0 121 61.2
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 8.0e-34 150.2 76 89.5
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 8.9e-33 146.7 94 76.6
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.2e-32 146.4 78 85.9
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.2e-32 146.4 80 87.5
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 4.4e-32 144.4 88 80.7
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 5.0e-28 131.0 146 45.9
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 5.6e-27 127.5 78 76.9
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 9.5e-27 126.7 65 90.8
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 3.4e-24 118.2 123 46.3
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 4.9e-23 114.4 124 45.2
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 6.4e-23 114.0 71 83.1
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 4.4e-16 91.3 264 25.8
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 6.4e-15 87.4 132 38.6
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 4.1e-14 84.7 96 47.9
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 1.2e-13 83.2 81 55.6
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 6.8e-09 67.4 39 69.2
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 3.4e-08 65.1 48 60.4
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 5.8e-08 64.3 42 66.7
HanXRQChr15g0465621 Helianthus annuus HOM05D003791 ORTHO05D019539 2.2e-07 62.4 93 41.9


User provided reference genes

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