Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g18300 Coffea canephora HOM05D001719 ORTHO05D007646 5.8e-22 106.7 55 100.0
Cc02_g07790 Coffea canephora HOM05D001719 ORTHO05D007646 2.2e-13 78.2 47 87.2
Oeu064373.1 Olea europaea HOM05D001719 ORTHO05D007646 8.4e-13 76.3 50 76.0
Peaxi162Scf00658g00730 Petunia axillaris HOM05D001719 ORTHO05D007646 1.8e-10 68.6 48 72.9
AT2G39670 Arabidopsis thaliana HOM05D001719 ORTHO05D007646 3.0e-10 67.8 48 72.9
QL08p059654 Quercus lobata HOM05D001719 ORTHO05D007646 3.9e-10 67.4 47 72.3
arahy.Tifrunner.gnm1.ann1.WUGE08 Arachis hypogaea HOM05D001719 ORTHO05D007646 5.1e-10 67.0 47 72.3
AUR62012094 Chenopodium quinoa HOM05D001719 ORTHO05D007646 5.1e-10 67.0 46 71.7
PGR044G0426 Punica granatum HOM05D001719 ORTHO05D007646 5.1e-10 67.0 47 72.3
Solyc06g030570.3 Solanum lycopersicum HOM05D001719 ORTHO05D007646 5.1e-10 67.0 48 68.8
Sopen06g009920 Solanum pennellii HOM05D001719 ORTHO05D007646 5.1e-10 67.0 48 68.8
TAR633G0218 Trochodendron aralioides HOM05D001719 ORTHO05D007646 5.1e-10 67.0 47 70.2
AL4G37080 Arabidopsis lyrata HOM05D001719 ORTHO05D007646 6.7e-10 66.6 48 72.9
arahy.Tifrunner.gnm1.ann1.30T4YV Arachis hypogaea HOM05D001719 ORTHO05D007646 6.7e-10 66.6 47 70.2
Dinv26021 Davidia involucrata HOM05D001719 ORTHO05D007646 6.7e-10 66.6 41 82.9
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 8.7e-10 66.2 41 80.5
Haze_17073 Corylus avellana HOM05D001719 ORTHO05D007646 8.7e-10 66.2 41 80.5
Hma1.2p1_0953F.1_g241120 Hydrangea macrophylla HOM05D001719 ORTHO05D007646 8.7e-10 66.2 47 70.2
Nitab4.5_0000065g0020 Nicotiana tabacum HOM05D001719 ORTHO05D007646 8.7e-10 66.2 44 75.0
Nitab4.5_0001719g0010 Nicotiana tabacum HOM05D001719 ORTHO05D007646 8.7e-10 66.2 44 75.0
Aqoxy2G02149 Aquilegia oxysepala HOM05D001719 ORTHO05D007646 1.1e-09 65.9 41 78.0
MBI05_g22025_MAGBIO Magnolia biondii HOM05D001719 ORTHO05D007646 1.1e-09 65.9 43 76.7
AL1G57620 Arabidopsis lyrata HOM05D001719 ORTHO05D007646 1.5e-09 65.5 48 70.8
CARHR134510 Cardamine hirsuta HOM05D001719 ORTHO05D007646 1.5e-09 65.5 48 70.8
Thhalv10016689m.g Eutrema salsugineum HOM05D001719 ORTHO05D007646 1.5e-09 65.5 41 80.5
Lj8A83T63 Lonicera japonica HOM05D001719 ORTHO05D007646 1.5e-09 65.5 48 68.8
Sp4g21930 Schrenkiella parvula HOM05D001719 ORTHO05D007646 1.5e-09 65.5 48 70.8
Atru.chr12.441 Acer truncatum HOM05D001719 ORTHO05D007646 1.9e-09 65.1 41 80.5
Atru.chr12.442 Acer truncatum HOM05D001719 ORTHO05D007646 1.9e-09 65.1 41 80.5
CiPaw.01G288000 Carya illinoinensis HOM05D001719 ORTHO05D007646 1.9e-09 65.1 47 72.3
Manes.10G029700 Manihot esculenta HOM05D001719 ORTHO05D007646 1.9e-09 65.1 46 71.7
Thecc.10G040800 Theobroma cacao HOM05D001719 ORTHO05D007646 1.9e-09 65.1 48 66.7
CSS0018439 Camellia sinensis var. sinensis HOM05D001719 ORTHO05D007646 2.5e-09 64.7 45 71.1
CSS0038205 Camellia sinensis var. sinensis HOM05D001719 ORTHO05D007646 2.5e-09 64.7 45 71.1
Cpa.g.sc1.412 Carica papaya HOM05D001719 ORTHO05D007646 2.5e-09 64.7 41 78.0
FvH4_7g22600 Fragaria vesca HOM05D001719 ORTHO05D007646 2.5e-09 64.7 41 78.0
FAN01G0725 Fragaria x ananassa HOM05D001719 ORTHO05D007646 2.5e-09 64.7 41 78.0
FAN01G1957 Fragaria x ananassa HOM05D001719 ORTHO05D007646 2.5e-09 64.7 41 78.0
FAN03G0055 Fragaria x ananassa HOM05D001719 ORTHO05D007646 2.5e-09 64.7 41 78.0
FAN03G1719 Fragaria x ananassa HOM05D001719 ORTHO05D007646 2.5e-09 64.7 41 78.0
FAN06G0650 Fragaria x ananassa HOM05D001719 ORTHO05D007646 2.5e-09 64.7 41 78.0
FAN06G2139 Fragaria x ananassa HOM05D001719 ORTHO05D007646 2.5e-09 64.7 41 78.0
FAN10G1208 Fragaria x ananassa HOM05D001719 ORTHO05D007646 2.5e-09 64.7 41 78.0
PSO151G0085 Papaver somniferum HOM05D001719 ORTHO05D007646 2.5e-09 64.7 46 69.6
PSO339G2556 Papaver somniferum HOM05D001719 ORTHO05D007646 2.5e-09 64.7 46 69.6
RcHm_v2.0_Chr1g0367701 Rosa chinensis HOM05D001719 ORTHO05D007646 2.5e-09 64.7 41 78.0
Carub.0004s2171 Capsella rubella HOM05D001719 ORTHO05D007646 3.3e-09 64.3 48 68.8
CAN.G130.9 Capsicum annuum HOM05D001719 ORTHO05D007646 3.3e-09 64.3 48 68.8
CDE04G3735 Ceratophyllum demersum HOM05D001719 ORTHO05D007646 3.3e-09 64.3 48 68.8
ClCG07G003250 Citrullus lanatus HOM05D001719 ORTHO05D007646 4.3e-09 63.9 41 75.6
CsaV3_5G008000 Cucumis sativus L. HOM05D001719 ORTHO05D007646 4.3e-09 63.9 41 75.6
Lalb_Chr10g0104531 Lupinus albus HOM05D001719 ORTHO05D007646 4.3e-09 63.9 47 70.2
THA.LOC104810032 Tarenaya hassleriana HOM05D001719 ORTHO05D007646 4.3e-09 63.9 41 75.6
THA.LOC104824278 Tarenaya hassleriana HOM05D001719 ORTHO05D007646 4.3e-09 63.9 41 78.0
Actinidia02943 Actinidia chinensis HOM05D001719 ORTHO05D007646 5.7e-09 63.5 41 78.0
Duzib114G0935 Durio zibethinus HOM05D001719 ORTHO05D007646 5.7e-09 63.5 48 64.6
Migut.F00783 Erythranthe guttata HOM05D001719 ORTHO05D007646 5.7e-09 63.5 41 75.6
Potri.008G056500 Populus trichocarpa HOM05D001719 ORTHO05D007646 5.7e-09 63.5 41 78.0
Sabra08G0041100 Salix brachista HOM05D001719 ORTHO05D007646 5.7e-09 63.5 41 78.0
Sed0013284 Sechium edule HOM05D001719 ORTHO05D007646 5.7e-09 63.5 41 75.6
AUR62039372 Chenopodium quinoa HOM05D001719 ORTHO05D007646 7.4e-09 63.2 46 67.4
Glyma.02G247700 Glycine max HOM05D001719 ORTHO05D007646 7.4e-09 63.2 47 68.1
Prupe.2G236300 Prunus persica HOM05D001719 ORTHO05D007646 7.4e-09 63.2 47 63.8
MSTRG.8997 Avicennia marina HOM05D001719 ORTHO05D007646 9.7e-09 62.8 48 66.7
BcaB02g09098 Brassica carinata HOM05D001719 ORTHO05D007646 9.7e-09 62.8 48 66.7
BcaC02g12095 Brassica carinata HOM05D001719 ORTHO05D007646 9.7e-09 62.8 48 66.7
BcaC05g27325 Brassica carinata HOM05D001719 ORTHO05D007646 9.7e-09 62.8 48 66.7
A05p06770 Brassica napus HOM05D001719 ORTHO05D007646 9.7e-09 62.8 48 66.7
C04p07920 Brassica napus HOM05D001719 ORTHO05D007646 9.7e-09 62.8 48 66.7
BolC4t22409H Brassica oleracea HOM05D001719 ORTHO05D007646 9.7e-09 62.8 48 66.7
BraA05t19644Z Brassica rapa HOM05D001719 ORTHO05D007646 9.7e-09 62.8 48 66.7
Ca_05895_v3 Cicer arietinum L. HOM05D001719 ORTHO05D007646 9.7e-09 62.8 47 66.0
Eucgr.J00005 Eucalyptus grandis HOM05D001719 ORTHO05D007646 9.7e-09 62.8 41 78.0
Glyma.14G068600 Glycine max HOM05D001719 ORTHO05D007646 9.7e-09 62.8 47 68.1
Gohir.A05G301700 Gossypium hirsutum HOM05D001719 ORTHO05D007646 9.7e-09 62.8 41 78.0
Gohir.D05G301400 Gossypium hirsutum HOM05D001719 ORTHO05D007646 9.7e-09 62.8 41 78.0
Gorai.009G319500 Gossypium raimondii HOM05D001719 ORTHO05D007646 9.7e-09 62.8 41 78.0
LjContig00141g0020777 Lotus japonicus HOM05D001719 ORTHO05D007646 9.7e-09 62.8 47 63.8
Nn2g13352 Nelumbo nucifera HOM05D001719 ORTHO05D007646 9.7e-09 62.8 41 73.2
MELO3C023846.2 Cucumis melo HOM05D001719 ORTHO05D007646 1.3e-08 62.4 41 73.2
DCAR_005051 Daucus carota HOM05D001719 ORTHO05D007646 1.3e-08 62.4 47 66.0
Lalb_Chr04g0251261 Lupinus albus HOM05D001719 ORTHO05D007646 1.3e-08 62.4 43 74.4
SGA_v2.0_scaffold426G51503 Striga asiatica HOM05D001719 ORTHO05D007646 1.3e-08 62.4 44 72.7
TWI63G1737 Tripterygium wilfordii HOM05D001719 ORTHO05D007646 1.3e-08 62.4 47 66.0
Aa31LG5G19980 Aethionema arabicum HOM05D001719 ORTHO05D007646 1.6e-08 62.0 48 64.6
EL10Ac2g04741 Beta vulgaris HOM05D001719 ORTHO05D007646 1.6e-08 62.0 41 73.2
Rhsim03G0130200 Rhododendron simsii HOM05D001719 ORTHO05D007646 1.6e-08 62.0 41 75.6
vmacro07175 Vaccinium macrocarpon HOM05D001719 ORTHO05D007646 1.6e-08 62.0 41 75.6
VMungo0647G1743 Vigna mungo HOM05D001719 ORTHO05D007646 1.6e-08 62.0 43 72.1
GSVIVG01016561001 Vitis vinifera HOM05D001719 ORTHO05D007646 1.6e-08 62.0 47 66.0
COL.COLO4_15056 Corchorus olitorius HOM05D001719 ORTHO05D007646 2.2e-08 61.6 48 66.7
Ah.16g102360 Amaranthus hybridus HOM05D001719 ORTHO05D007646 2.8e-08 61.2 39 76.9
MD07G1012700 Malus domestica HOM05D001719 ORTHO05D007646 2.8e-08 61.2 47 61.7
MD07G1199600 Malus domestica HOM05D001719 ORTHO05D007646 2.8e-08 61.2 47 61.7
CANSAT56G1570 Cannabis sativa HOM05D001719 ORTHO05D007646 3.7e-08 60.8 42 71.4
CANSAT56G2080 Cannabis sativa HOM05D001719 ORTHO05D007646 3.7e-08 60.8 42 71.4
Phvul.008G233300 Phaseolus vulgaris HOM05D001719 ORTHO05D007646 3.7e-08 60.8 43 69.8
ECA232G4841 Erigeron canadensis HOM05D001719 ORTHO05D007646 4.8e-08 60.5 47 70.2
Lsat_1_v5_gn_9_66060 Lactuca sativa HOM05D001719 ORTHO05D007646 4.8e-08 60.5 41 78.0
Psat2g041640 Pisum sativum HOM05D001719 ORTHO05D007646 4.8e-08 60.5 47 63.8
Medtr5g079860 Medicago truncatula HOM05D001719 ORTHO05D007646 6.3e-08 60.1 47 63.8
TPR.G3478 Trifolium pratense HOM05D001719 ORTHO05D007646 6.3e-08 60.1 47 66.0
Hund13767 Selenicereus undatus HOM05D001719 ORTHO05D007646 8.2e-08 59.7 39 74.4
Os01g0973400 Oryza sativa ssp. japonica HOM05D001719 ORTHO05D007646 1.4e-07 58.9 41 70.7
Sc14g0004680 Simmondsia chinensis HOM05D001719 ORTHO05D007646 1.4e-07 58.9 48 62.5
HanXRQChr02g0049161 Helianthus annuus HOM05D001719 ORTHO05D007646 3.1e-07 57.8 44 68.2
SHI28787 Sapria himalayana HOM05D001719 ORTHO05D007646 9.0e-07 56.2 42 64.3
SEGI_27628 Sequoiadendron giganteum HOM05D001719 ORTHO05D007646 2.0e-06 55.1 43 60.5
Zm00001eb126750 Zea mays HOM05D001719 ORTHO05D007646 3.4e-06 54.3 41 61.0
Mapoly0005s0156 Marchantia polymorpha HOM05D001719 ORTHO05D007646 4.5e-06 53.9 45 55.6
Zm00001eb400870 Zea mays HOM05D001719 ORTHO05D007646 4.5e-06 53.9 41 63.4
AT1G50050 Arabidopsis thaliana HOM05D000217 ORTHO05D000121 5.9e-06 53.5 44 63.6
CBR_g41638 Chara braunii HOM05D001719 ORTHO05D007646 7.7e-06 53.1 41 61.0
Pp3c6_16060 Physcomitrium patens HOM05D001719 ORTHO05D007646 7.7e-06 53.1 47 53.2


User provided reference genes

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