Gene: AT2G39670

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G39670
  • Transcript Identifier AT2G39670.1
  • Gene Type Coding gene
  • Location Chr2 : 16534303-16536986 : positive

Gene Family Information

  • ID HOM05D001719
  • #Genes/#Species 376/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G39670.1
  • uniprot O48815

Descriptions

  • Description Radical SAM superfamily protein
  • Computational description Radical SAM superfamily protein; FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Ribosomal RNA large subunit methyltransferase RlmN; (InterPro:IPR004383), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: Radical SAM superfamily protein (TAIR:AT3G19630.1); Has 7017 Blast hits to 7011 proteins in 2312 species: Archae - 11; Bacteria - 5106; Metazoa - 1; Fungi - 1; Plants - 134; Viruses - 5; Other Eukaryotes - 1759 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070475
IBA
IEA
Gene OntologyrRNA base methylation1
GO:0070475
IEA
InterProrRNA base methylation
GO:0030488
IBA
IEA
Gene OntologytRNA methylation1
GO:0030488
IEA
InterProtRNA methylation
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0006364
IEA
InterProrRNA processing
GO:0032259
IEA
GOA Databasemethylation
GO:0008033
IEA
GOA DatabasetRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0008173
IEA
Gene OntologyRNA methyltransferase activity
GO:0008173
IEA
InterProRNA methyltransferase activity
GO:0051536
IEA
GOA Databaseiron-sulfur cluster binding
GO:0051536
IEA
InterProiron-sulfur cluster binding
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0008168
IEA
GOA Databasemethyltransferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0051539
IEA
GOA Database4 iron, 4 sulfur cluster binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013785 Aldolase-type TIM barrel
IPR040072 Methyltransferase (Class A)
IPR007197 Radical SAM
IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr
IPR006638 Elp3/MiaB/NifB
IPR027492 Dual-specificity RNA methyltransferase RlmN
Mapman id Description
35.1 not assigned.annotated