Gene: Carub.0004s2171

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0004s2171
  • Transcript Identifier Carub.0004s2171.1
  • Gene Type Coding gene
  • Location scaffold_4 : 11635935-11638560 : positive

Gene Family Information

  • ID HOM05D001719
  • #Genes/#Species 376/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0004s2171.v1.1
  • pacid 39239038
  • synonym Carubv10023268m.g

Descriptions

  • Description K06941 - 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] (rlmN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006364
IEA
InterProrRNA processing
GO:0030488
IEA
InterProtRNA methylation
GO:0070475
IEA
InterProrRNA base methylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
InterProcatalytic activity
GO:0051536
IEA
InterProiron-sulfur cluster binding
GO:0008173
IEA
InterProRNA methyltransferase activity

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006638 Elp3/MiaB/NifB
IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr
IPR027492 Dual-specificity RNA methyltransferase RlmN
IPR040072 Methyltransferase (Class A)
IPR007197 Radical SAM
IPR013785 Aldolase-type TIM barrel
Mapman id Description
35.1 not assigned.annotated