Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 6.0e-133 477.6 261 100.0
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 3.8e-119 431.8 261 89.3
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 3.2e-118 428.7 265 87.2
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 4.2e-118 428.3 271 85.2
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 1.6e-117 426.4 261 91.6
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 5.1e-116 421.4 261 87.4
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 6.6e-116 421.0 259 85.3
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 1.5e-115 419.9 259 84.9
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 1.5e-115 419.9 259 84.9
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 1.9e-115 419.5 259 85.3
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 1.1e-113 413.7 261 88.1
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 1.1e-113 413.7 259 87.6
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 1.8e-113 412.9 260 86.9
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 3.8e-111 405.2 259 83.8
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 3.8e-111 405.2 260 83.5
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 2.4e-110 402.5 259 86.1
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 2.7e-109 399.1 286 75.5
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 3.5e-109 398.7 255 82.4
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 3.5e-109 398.7 255 82.4
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 1.7e-108 396.4 255 81.6
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 1.7e-108 396.4 255 81.6
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 8.4e-103 377.5 286 72.4
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.6e-101 373.2 284 72.5
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.6e-101 373.2 284 72.5
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.6e-101 373.2 284 72.5
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 1.6e-101 373.2 283 72.8
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 1.3e-100 370.2 248 79.4
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 4.3e-99 365.2 242 78.9
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.3e-98 363.6 242 78.1
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 2.1e-98 362.8 261 74.3
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.1e-97 360.5 242 77.7
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 1.4e-97 360.1 260 74.2
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 1.8e-97 359.8 278 70.5
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 4.0e-97 358.6 240 78.8
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 6.9e-97 357.8 271 71.2
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 6.9e-97 357.8 270 70.4
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 2.0e-96 356.3 264 73.5
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 2.0e-96 356.3 251 74.9
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 2.0e-96 356.3 248 76.6
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 2.6e-96 355.9 270 70.0
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 4.5e-96 355.1 263 72.6
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 7.6e-96 354.4 259 73.0
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 7.6e-96 354.4 269 71.4
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 1.0e-95 354.0 269 71.4
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 1.3e-95 353.6 252 74.2
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 1.3e-95 353.6 263 71.1
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.7e-95 353.2 269 71.4
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 1.7e-95 353.2 245 76.3
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 3.8e-95 352.1 259 72.6
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 3.8e-95 352.1 267 70.4
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 3.8e-95 352.1 270 70.0
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 4.9e-95 351.7 258 72.9
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 8.4e-95 350.9 239 76.2
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 8.4e-95 350.9 288 67.4
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.1e-94 350.5 269 71.0
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 1.4e-94 350.1 253 74.3
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 1.9e-94 349.7 262 72.1
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 9.3e-94 347.4 269 73.6
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 1.2e-93 347.1 235 77.4
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 1.6e-93 346.7 241 75.5
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 2.1e-93 346.3 241 75.5
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 4.6e-93 345.1 271 72.0
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 7.9e-93 344.4 260 71.9
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.0e-92 344.0 278 70.9
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 2.3e-92 342.8 267 71.5
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 2.3e-92 342.8 252 72.2
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 3.0e-92 342.4 261 70.1
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 3.0e-92 342.4 244 75.0
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 3.9e-92 342.0 239 76.2
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 1.9e-91 339.7 261 70.5
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 5.7e-91 338.2 258 70.9
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 7.4e-91 337.8 251 72.1
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 1.6e-90 336.7 239 74.1
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 2.1e-90 336.3 246 73.6
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 2.1e-90 336.3 246 74.0
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 2.8e-90 335.9 248 72.2
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 3.7e-90 335.5 247 72.1
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 3.7e-90 335.5 244 73.4
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 4.8e-90 335.1 245 78.4
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 8.2e-90 334.3 246 72.0
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 8.2e-90 334.3 250 73.2
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 8.2e-90 334.3 255 69.8
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 3.1e-89 332.4 244 72.5
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 6.9e-89 331.3 284 66.9
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 9.0e-89 330.9 264 67.4
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 9.0e-89 330.9 261 69.3
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 1.5e-88 330.1 268 69.8
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 2.0e-88 329.7 263 67.7
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 5.9e-88 328.2 268 67.2
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 1.7e-87 326.6 282 65.2
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 2.2e-87 326.2 268 66.0
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 2.9e-87 325.9 251 69.7
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 5.0e-87 325.1 260 68.8
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 1.9e-86 323.2 278 65.5
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 2.5e-86 322.8 239 71.1
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 2.5e-86 322.8 241 71.0
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 1.6e-85 320.1 244 70.5
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 3.5e-85 318.9 281 64.4
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 1.0e-84 317.4 239 70.7
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 1.8e-84 316.6 241 68.9
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 2.3e-84 316.2 241 68.9
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 8.7e-84 314.3 255 70.6
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 5.7e-83 311.6 268 66.8
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 3.9e-76 288.9 238 67.2
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 1.3e-74 283.9 208 75.0
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 1.4e-73 280.4 218 68.8
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 3.4e-72 275.8 239 64.4
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 1.3e-71 273.9 264 57.6
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 4.2e-70 268.9 267 56.2
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 2.1e-69 266.5 153 86.9
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 4.8e-66 255.4 153 82.4
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 4.8e-66 255.4 204 67.2
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 6.3e-66 255.0 275 55.6
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 7.0e-65 251.5 272 52.9
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 7.7e-64 248.1 280 51.4
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 2.2e-58 229.9 239 57.7
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 6.3e-58 228.4 154 76.6
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 1.0e-55 221.1 265 49.1
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 2.2e-55 219.9 158 66.5
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 3.2e-54 216.1 125 86.4
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 1.6e-53 213.8 213 60.1
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 2.6e-51 206.5 153 72.5
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 1.0e-47 194.5 153 64.7
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.1e-46 191.0 154 68.2
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.4e-44 184.1 154 66.2
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.8e-44 183.7 154 66.2
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 1.7e-42 177.2 177 61.0
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 4.5e-40 169.1 231 47.2
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 8.6e-39 164.9 142 65.5
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 4.0e-36 156.0 105 75.2
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 9.5e-30 134.8 67 94.0
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 2.5e-22 110.2 73 71.2
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 2.5e-22 110.2 241 36.1
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 4.9e-18 95.9 118 52.5
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.5e-14 84.3 100 53.0
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 1.6e-13 80.9 123 45.5
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 3.1e-12 76.6 42 83.3
BcaC07g41861 Brassica carinata HOM05D005498 ORTHO05D006719 4.0e-12 76.3 57 75.4
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 2.9e-10 70.1 118 42.4
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 9.2e-09 65.1 172 33.1
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 3.0e-07 60.1 99 42.4
SMO144G0154 Selaginella moellendorffii HOM05D006571 ORTHO05D007771 7.3e-06 55.5 117 34.2


User provided reference genes

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