Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 5.2e-273 944.9 1031 100.0
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 6.6e-151 539.3 1031 75.9
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 1.3e-114 418.7 341 73.3
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 1.9e-110 404.8 340 74.4
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 3.2e-105 387.5 940 70.6
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 1.6e-101 375.2 489 65.4
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 2.6e-99 367.9 245 82.4
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 8.2e-93 346.3 245 77.1
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 2.6e-91 341.3 928 58.7
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 3.4e-91 340.9 247 74.5
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 1.3e-90 339.0 262 72.1
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 3.2e-89 334.3 400 70.2
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 2.7e-88 331.3 259 68.0
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 6.1e-88 330.1 376 49.7
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 1.0e-87 329.3 244 66.8
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 2.3e-87 328.2 254 73.6
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 3.0e-87 327.8 255 71.4
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 6.7e-87 326.6 259 69.9
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 4.4e-86 323.9 385 56.6
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 9.7e-86 322.8 257 68.5
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 1.3e-85 322.4 256 66.8
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 2.8e-85 321.2 252 69.0
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 4.8e-85 320.5 265 67.2
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 6.3e-85 320.1 241 69.7
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 1.1e-84 319.3 257 70.4
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 1.1e-84 319.3 255 63.5
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.1e-84 319.3 262 63.4
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 2.4e-84 318.2 264 66.3
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 3.1e-84 317.8 193 76.2
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 7.0e-84 316.6 265 63.4
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 9.1e-84 316.2 258 65.9
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 1.6e-83 315.5 259 64.5
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 2.0e-83 315.1 387 70.0
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 2.6e-83 314.7 253 68.0
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 3.5e-83 314.3 249 68.7
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 4.5e-83 313.9 258 64.3
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 5.9e-83 313.5 258 65.5
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 1.7e-82 312.0 265 63.0
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 2.9e-82 311.2 237 69.2
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 2.9e-82 311.2 262 64.1
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 2.9e-82 311.2 260 68.1
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 8.5e-82 309.7 270 65.2
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 1.9e-81 308.5 260 65.8
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 1.9e-81 308.5 259 65.3
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 2.5e-81 308.1 259 64.5
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 2.5e-81 308.1 255 66.7
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 3.2e-81 307.8 259 68.7
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 3.2e-81 307.8 208 72.6
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 4.2e-81 307.4 251 64.9
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 1.2e-80 305.8 265 60.8
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 1.6e-80 305.4 275 61.5
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 2.1e-80 305.1 262 61.8
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 4.7e-80 303.9 255 68.6
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 1.0e-79 302.8 242 68.6
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 1.8e-79 302.0 259 61.0
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 5.2e-79 300.4 244 69.3
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 5.2e-79 300.4 263 65.8
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 4.4e-78 297.4 252 63.5
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 9.7e-78 296.2 254 65.4
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 1.7e-77 295.4 260 65.0
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 1.7e-77 295.4 248 66.9
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 3.7e-77 294.3 251 67.3
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 8.2e-77 293.1 260 64.6
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 7.0e-76 290.0 265 57.4
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 9.1e-76 289.7 260 64.6
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 2.2e-74 285.0 244 66.4
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 2.9e-74 284.6 271 59.8
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.1e-73 282.7 265 62.3
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 1.9e-73 282.0 260 53.5
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 4.2e-73 280.8 250 63.2
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 7.2e-73 280.0 249 60.6
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 2.3e-71 275.0 254 62.2
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 4.4e-70 270.8 248 59.3
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 7.5e-70 270.0 248 59.3
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 2.2e-69 268.5 248 59.3
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 6.3e-69 266.9 246 61.0
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 8.3e-69 266.5 242 55.4
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 3.1e-68 264.6 245 58.8
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 4.1e-68 264.2 253 59.7
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 7.0e-68 263.5 245 60.8
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 2.7e-67 261.5 264 57.2
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 3.5e-67 261.2 279 53.0
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 4.5e-67 260.8 151 84.1
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 5.9e-67 260.4 197 64.5
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 1.7e-66 258.8 198 63.6
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 3.8e-66 257.7 280 54.3
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 3.8e-66 257.7 247 57.9
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 3.8e-66 257.7 253 59.7
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 6.5e-66 256.9 357 45.4
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 2.5e-65 255.0 280 53.6
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 4.2e-65 254.2 240 59.2
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 4.0e-63 247.7 187 65.2
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 3.4e-62 244.6 385 43.6
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 4.1e-60 237.7 240 55.8
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 2.7e-59 235.0 247 50.6
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 5.9e-59 233.8 222 64.4
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 3.6e-56 224.6 141 74.5
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 8.9e-55 219.9 139 76.3
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.3e-53 216.1 165 63.0
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 8.0e-48 196.8 189 59.8
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 8.0e-48 196.8 118 82.2
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 5.2e-47 194.1 124 75.0
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 1.4e-44 186.0 200 47.0
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 7.0e-44 183.7 859 60.8
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 2.0e-43 182.2 182 45.6
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 3.0e-42 178.3 203 45.3
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 1.4e-36 159.5 111 73.0
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 4.6e-35 154.5 210 85.7
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 1.5e-33 149.4 182 44.0
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 5.6e-33 147.5 182 43.4
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 6.2e-32 144.1 109 65.1
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 3.4e-30 138.3 80 78.8
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 7.6e-30 137.1 182 39.6
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 1.3e-29 136.3 107 64.5
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 2.9e-29 135.2 190 41.6
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 3.2e-28 131.7 75 78.7
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 5.4e-28 131.0 108 61.1
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 7.1e-28 130.6 108 61.1
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 9.2e-28 130.2 87 70.1
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 1.6e-27 129.4 111 57.7
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 2.1e-27 129.0 114 58.8
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.1e-25 123.2 78 73.1
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 3.3e-25 121.7 119 56.3
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 5.6e-25 120.9 203 36.9
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 7.3e-25 120.6 97 59.8
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 1.2e-24 119.8 74 73.0
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 4.7e-24 117.9 100 54.0
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 8.1e-24 117.1 114 52.6
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 6.6e-18 97.4 70 67.1
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 1.4e-15 89.7 164 39.6
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.4e-15 89.7 85 56.5
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 3.5e-11 75.1 81 49.4
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 4.6e-11 74.7 48 68.8
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 1.0e-10 73.6 161 29.8
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 1.7e-10 72.8 40 80.0
Psat0s3877g0040 Pisum sativum HOM05D005462 ORTHO05D006718 7.4e-09 67.4 109 45.0
ATR0304G030 Amborella trichopoda HOM05D000142 ORTHO05D010028 8.1e-08 63.9 83 39.8
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 8.1e-08 63.9 43 69.8
Lalb_Chr07g0183131 Lupinus albus HOM05D000142 ORTHO05D001253 1.8e-07 62.8 112 36.6
ATR0680G306 Amborella trichopoda HOM05D000604 ORTHO05D004856 1.2e-06 60.1 172 28.5
PGR083G0821 Punica granatum HOM05D000285 ORTHO05D000241 1.2e-06 60.1 104 34.6
Hund23136 Selenicereus undatus HOM05D000285 ORTHO05D000241 1.2e-06 60.1 77 39.0
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 2.0e-06 59.3 39 66.7
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 2.0e-06 59.3 39 66.7
unitig_85.g27337 Utricularia gibba HOM05D000285 ORTHO05D000241 2.6e-06 58.9 77 37.7
unitig_85.g27340 Utricularia gibba HOM05D000285 ORTHO05D000241 2.6e-06 58.9 77 37.7
Lalb_Chr17g0348741 Lupinus albus HOM05D000285 ORTHO05D000241 3.4e-06 58.5 115 33.0
HanXRQChr01g0005101 Helianthus annuus HOM05D000285 ORTHO05D000241 4.5e-06 58.2 105 34.3
unitig_62.g23292 Utricularia gibba HOM05D000285 ORTHO05D000241 4.5e-06 58.2 77 37.7
RcHm_v2.0_Chr2g0173111 Rosa chinensis HOM05D000285 ORTHO05D000241 5.8e-06 57.8 83 38.6
Sp6g17440 Schrenkiella parvula HOM05D000285 ORTHO05D000241 5.8e-06 57.8 77 36.4
Thecc.06G136200 Theobroma cacao HOM05D000604 ORTHO05D004856 5.8e-06 57.8 178 27.5
Zm00001eb302580 Zea mays HOM05D000285 ORTHO05D000241 5.8e-06 57.8 105 35.2
Migut.G00576 Erythranthe guttata HOM05D000142 ORTHO05D008707 7.6e-06 57.4 83 36.1
FvH4_3g42510 Fragaria vesca HOM05D000285 ORTHO05D000241 7.6e-06 57.4 73 39.7
FvH4_6g51431 Fragaria vesca HOM05D000285 ORTHO05D000241 7.6e-06 57.4 102 39.2
FAN05G2383 Fragaria x ananassa HOM05D000285 ORTHO05D000241 7.6e-06 57.4 84 41.7
FAN11G1113 Fragaria x ananassa HOM05D000285 ORTHO05D000241 7.6e-06 57.4 79 38.0
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 7.6e-06 57.4 102 39.2
HanXRQChr05g0159931 Helianthus annuus HOM05D000285 ORTHO05D000241 7.6e-06 57.4 78 38.5
PSO210G6644 Papaver somniferum HOM05D000285 ORTHO05D000241 7.6e-06 57.4 77 39.0
PSO302G0304 Papaver somniferum HOM05D000285 ORTHO05D000241 7.6e-06 57.4 77 39.0
Phvul.008G274900 Phaseolus vulgaris HOM05D000285 ORTHO05D000241 7.6e-06 57.4 107 34.6
THA.LOC104813442 Tarenaya hassleriana HOM05D000285 ORTHO05D000241 7.6e-06 57.4 77 37.7
arahy.Tifrunner.gnm1.ann1.230XUM Arachis hypogaea HOM05D000285 ORTHO05D000241 9.9e-06 57.0 93 36.6
arahy.Tifrunner.gnm1.ann1.Y057K4 Arachis hypogaea HOM05D000285 ORTHO05D000241 9.9e-06 57.0 93 36.6
Cc09_g00660 Coffea canephora HOM05D000285 ORTHO05D000241 9.9e-06 57.0 92 35.9
ECA246G0979 Erigeron canadensis HOM05D000285 ORTHO05D000241 9.9e-06 57.0 78 38.5
Migut.M01417 Erythranthe guttata HOM05D000285 ORTHO05D000241 9.9e-06 57.0 78 41.0
FAN16G2608 Fragaria x ananassa HOM05D000285 ORTHO05D000241 9.9e-06 57.0 79 38.0
FAN21G3170 Fragaria x ananassa HOM05D000285 ORTHO05D000241 9.9e-06 57.0 79 38.0
Phvul.006G053000 Phaseolus vulgaris HOM05D000285 ORTHO05D000241 9.9e-06 57.0 78 38.5
Solyc07g048030.4 Solanum lycopersicum HOM05D000285 ORTHO05D000241 9.9e-06 57.0 78 39.7
Sopen07g024450 Solanum pennellii HOM05D000285 ORTHO05D000241 9.9e-06 57.0 78 39.7
THA.LOC104817697 Tarenaya hassleriana HOM05D000285 ORTHO05D000241 9.9e-06 57.0 77 37.7
VMungo0540G0939 Vigna mungo HOM05D000285 ORTHO05D000241 9.9e-06 57.0 78 38.5


User provided reference genes

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