Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 2160.6 1200 100.0
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 2019.2 1195 94.0
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1965.7 1200 92.1
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1912.5 1216 88.0
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1897.1 1199 86.7
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1892.1 1199 87.7
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1883.2 1198 84.0
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1879.0 1205 86.7
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1859.0 1176 86.5
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1855.1 1207 83.3
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1772.3 1131 86.0
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1768.4 1180 83.1
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1742.2 1199 79.9
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1723.4 1200 80.6
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1718.4 1167 79.7
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1714.9 1174 78.6
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1714.5 1200 80.2
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1714.5 1176 80.1
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1713.4 1198 80.5
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1712.6 1199 79.3
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1711.4 1174 79.3
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1704.1 1197 78.0
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1703.0 1199 79.4
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1703.0 1198 78.6
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1691.0 1196 78.8
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1683.7 1180 78.6
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1679.5 1181 77.4
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1675.6 1204 76.4
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1672.1 1200 78.8
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1669.8 1204 78.0
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1667.9 1181 78.7
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1665.2 1207 76.9
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1663.7 1181 78.6
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1660.6 1182 78.2
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1657.1 1186 78.0
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1654.8 1226 75.0
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1653.3 1240 74.6
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1649.8 1178 76.6
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1641.7 1173 76.9
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1635.5 1207 74.5
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1635.5 1172 76.1
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1631.7 1219 76.2
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1631.3 1199 75.9
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1628.2 1184 77.1
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1622.4 1198 74.0
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1618.2 1176 76.6
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1616.7 1126 80.4
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1613.6 1210 74.0
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1609.0 1198 75.0
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1609.0 1204 74.9
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1604.3 1199 72.0
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1599.3 1202 73.4
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1594.7 1150 75.0
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1593.9 1182 74.1
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1591.2 1215 71.5
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1589.7 1216 73.8
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1588.2 1221 71.9
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1584.3 1217 71.3
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1583.5 1196 72.7
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1583.5 1202 72.0
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1571.2 1180 74.2
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1563.1 1069 81.7
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1562.7 1179 73.1
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1557.0 1157 73.5
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1552.3 1209 73.0
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1547.3 1201 71.1
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1546.9 1197 71.2
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1544.3 1198 70.3
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1543.1 1228 68.8
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1529.6 1400 65.1
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1508.0 1176 71.6
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1506.1 1193 70.0
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1505.3 1204 68.4
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1503.0 1186 68.3
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1503.0 1186 68.3
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1500.7 1198 70.1
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1500.0 1200 69.9
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1496.9 1200 67.7
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1495.7 1195 70.7
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1494.2 1172 71.0
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1493.0 1200 71.8
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1491.9 1199 69.7
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1491.1 1204 69.5
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1488.8 1210 69.2
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1487.6 1167 70.3
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1484.9 1206 69.3
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1483.4 1202 69.5
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1482.2 1199 68.2
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1482.2 1167 70.4
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1479.2 1177 67.9
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1469.5 1280 65.8
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1451.0 1196 69.4
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1433.3 1205 66.3
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1405.2 1181 66.8
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1396.7 1195 65.2
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1382.5 1182 68.2
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1370.1 932 79.5
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1365.9 1161 65.9
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1352.8 879 78.7
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1350.1 1185 64.1
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1345.5 1207 64.2
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1324.3 1219 62.4
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1281.2 877 77.3
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 0.0e+00 1223.4 967 75.0
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1203.0 844 75.4
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1198.3 816 78.9
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1124.8 1222 53.4
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1090.5 786 72.6
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1086.2 762 76.8
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.0e-304 1050.4 896 70.4
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 9.4e-274 947.6 666 74.0
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.9e-266 923.3 923 60.6
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.1e-265 919.8 715 69.8
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.2e-198 697.2 586 65.5
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 7.3e-194 682.2 531 66.9
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 4.0e-176 623.2 962 41.7
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 1.8e-168 597.8 476 69.3
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 3.2e-157 560.5 379 78.1
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 4.4e-154 550.1 293 91.1
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 2.6e-138 497.7 441 63.5
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 7.7e-127 459.5 364 76.6
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 1.0e-126 459.1 1147 35.0
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 2.1e-124 451.4 374 69.0
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 2.7e-119 434.5 827 38.9
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 1.2e-114 419.1 237 84.0
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 4.7e-100 370.5 553 44.3
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.9e-96 358.6 313 62.9
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 1.6e-92 345.5 1275 28.1
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 3.4e-90 337.8 212 80.2
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 4.9e-89 334.0 181 89.5
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 4.9e-89 334.0 181 89.5
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 1.2e-82 312.8 174 85.6
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.7e-79 301.6 213 71.8
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 6.0e-79 300.4 213 71.8
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 1.3e-73 282.7 334 55.1
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 1.7e-73 282.3 328 57.6
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 9.6e-69 266.5 224 62.5
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 2.4e-67 261.9 331 58.9
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 6.4e-65 253.8 329 47.4
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 6.2e-60 237.3 134 91.0
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 2.9e-57 228.4 210 66.2
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.8e-57 228.0 129 88.4
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 8.4e-57 226.9 161 72.7
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.1e-56 226.5 313 49.5
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.8e-54 219.2 154 73.4
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 8.2e-52 210.3 313 52.7
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 2.0e-50 205.7 323 42.1
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 2.5e-48 198.7 231 58.0
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 4.6e-47 194.5 138 70.3
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.1e-37 163.3 95 84.2
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 1.1e-35 156.8 83 92.8
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 2.4e-35 155.6 155 58.1
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 1.5e-34 152.9 120 60.8
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 6.5e-33 147.5 94 78.7
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 1.2e-31 143.3 107 74.8
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 4.7e-31 141.4 77 87.0
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 8.0e-31 140.6 123 63.4
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 2.8e-28 132.1 166 51.8
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 5.3e-27 127.9 72 88.9
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 1.3e-25 123.2 92 62.0
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 8.5e-25 120.6 78 73.1
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 4.0e-22 111.7 65 87.7
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 6.7e-22 110.9 113 57.5
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 4.5e-18 98.2 85 55.3
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 5.9e-18 97.8 59 83.1
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 8.5e-17 94.0 68 66.2
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 3.2e-16 92.0 57 73.7
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 4.2e-16 91.7 56 73.2
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 4.2e-16 91.7 77 57.1
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 1.2e-15 90.1 56 75.0
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 1.6e-15 89.7 76 68.4
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 1.6e-15 89.7 126 46.0
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 8.3e-12 77.4 46 84.8
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 9.5e-08 63.9 80 65.0
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 2.8e-07 62.4 47 51.1
TPR.G23196 Trifolium pratense HOM05D000141 ORTHO05D001311 1.0e-06 60.5 33 87.9
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 1.8e-06 59.7 146 34.2
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 3.0e-06 58.9 45 57.8


User provided reference genes

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