Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 3.3e-181 638.3 330 100.0
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.1e-179 633.3 330 99.1
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 3.0e-158 562.0 331 87.9
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 5.2e-158 561.2 330 88.2
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 7.3e-152 540.8 328 82.3
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 2.8e-151 538.9 323 84.5
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 3.6e-151 538.5 348 79.9
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 8.3e-148 527.3 330 80.9
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 5.4e-147 524.6 330 80.6
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 1.2e-146 523.5 330 80.6
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 1.0e-145 520.4 293 88.4
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 1.7e-145 519.6 332 78.9
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 8.6e-145 517.3 328 80.2
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 2.5e-144 515.8 357 75.4
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 3.3e-144 515.4 330 78.2
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 1.6e-143 513.1 329 80.2
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 8.0e-143 510.8 330 79.1
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 8.0e-143 510.8 328 79.6
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 3.1e-142 508.8 327 79.8
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 3.1e-142 508.8 327 79.2
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 4.0e-142 508.4 330 79.4
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 5.2e-142 508.1 330 77.0
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 6.8e-142 507.7 330 78.2
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 3.4e-141 505.4 328 78.7
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 3.4e-141 505.4 331 78.9
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.3e-140 503.4 329 78.1
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.3e-140 503.4 329 78.4
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 1.7e-140 503.1 328 78.0
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 2.2e-140 502.7 329 78.4
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 4.9e-140 501.5 329 78.4
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.4e-139 500.0 329 77.5
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 1.6e-138 496.5 328 76.8
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.6e-138 496.5 331 77.6
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.6e-138 496.5 333 77.5
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 1.0e-137 493.8 328 75.3
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 3.0e-137 492.3 321 79.1
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 3.9e-137 491.9 328 75.3
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 5.1e-137 491.5 328 75.0
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 5.1e-137 491.5 328 75.0
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 8.6e-137 490.7 328 75.0
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 1.5e-136 490.0 328 75.3
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 4.3e-136 488.4 359 71.6
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 7.3e-136 487.6 328 74.1
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 7.3e-136 487.6 328 74.4
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 9.5e-136 487.3 329 75.4
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 2.1e-135 486.1 279 88.9
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 2.8e-135 485.7 333 76.6
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 3.6e-135 485.3 328 73.8
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 6.2e-135 484.6 328 74.1
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 6.2e-135 484.6 329 74.8
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.8e-134 483.0 323 77.1
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 3.1e-134 482.3 328 74.7
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 4.0e-134 481.9 329 72.6
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 6.8e-134 481.1 330 75.8
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.2e-133 480.3 328 73.8
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 3.4e-133 478.8 329 72.0
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 3.4e-133 478.8 363 70.5
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 4.4e-133 478.4 328 73.5
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 1.7e-132 476.5 330 73.3
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 1.7e-132 476.5 330 73.6
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 6.4e-132 474.6 328 72.9
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 6.4e-132 474.6 402 65.2
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 1.4e-131 473.4 328 73.2
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 1.9e-131 473.0 321 76.6
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.0e-129 467.2 328 73.5
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 2.3e-129 466.1 328 72.0
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 3.0e-129 465.7 328 72.6
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 3.0e-129 465.7 327 72.5
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 6.6e-129 464.5 330 72.1
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 1.1e-128 463.8 330 72.1
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.1e-128 463.8 328 70.7
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.9e-128 463.0 328 70.4
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.9e-128 463.0 328 70.4
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 2.5e-128 462.6 328 72.9
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 7.3e-128 461.1 328 72.6
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 2.8e-127 459.1 328 72.6
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 6.2e-127 458.0 327 70.6
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 6.2e-127 458.0 328 71.0
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 1.4e-126 456.8 328 71.6
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 5.2e-126 454.9 328 71.0
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 5.8e-125 451.4 329 69.3
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 1.4e-123 446.8 327 68.5
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 1.2e-122 443.7 318 71.7
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 1.6e-122 443.4 327 67.9
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 2.7e-122 442.6 327 68.2
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 3.5e-122 442.2 329 68.1
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 4.6e-122 441.8 329 68.4
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 7.8e-122 441.0 327 68.2
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 2.3e-121 439.5 327 67.6
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 2.3e-121 439.5 320 68.4
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 3.9e-121 438.7 327 67.6
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 5.1e-121 438.3 327 67.0
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 1.1e-120 437.2 329 70.8
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 1.1e-120 437.2 328 68.0
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 4.3e-120 435.3 327 65.4
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 9.6e-120 434.1 327 66.1
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 1.3e-119 433.7 273 80.2
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.8e-119 432.6 322 70.5
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 4.0e-118 428.7 337 63.5
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 9.9e-117 424.1 328 67.4
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 5.4e-115 418.3 328 66.2
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 1.2e-114 417.2 329 66.0
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 1.0e-113 414.1 323 65.3
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 5.3e-110 401.7 330 64.5
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 9.0e-110 401.0 325 62.5
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 7.1e-107 391.3 325 63.7
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 6.0e-106 388.3 331 68.0
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 4.8e-103 378.6 324 64.2
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 5.8e-101 371.7 328 61.9
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 1.5e-96 357.1 276 68.8
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 5.3e-94 348.6 330 57.0
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 6.9e-94 348.2 320 57.2
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 7.1e-91 338.2 329 56.8
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 4.6e-90 335.5 321 56.7
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 2.2e-87 326.6 321 56.1
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 3.7e-87 325.9 330 51.8
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 6.1e-82 308.5 177 87.0
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 1.7e-76 290.4 324 47.5
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 1.7e-76 290.4 198 74.7
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 3.7e-71 272.7 331 52.0
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 1.2e-69 267.7 186 73.7
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.5e-67 260.0 199 69.8
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 4.2e-67 259.2 216 63.0
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 3.9e-65 252.7 276 45.7
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.4e-62 244.2 337 45.4
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 7.7e-61 238.4 274 52.2
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 2.1e-58 230.3 158 70.9
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 1.8e-57 227.3 299 43.5
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 5.2e-57 225.7 183 62.8
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 1.2e-56 224.6 142 75.4
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 3.7e-55 219.5 133 80.5
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 1.0e-52 211.5 131 77.9
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 6.8e-49 198.7 139 69.1
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 9.8e-48 194.9 131 74.8
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 3.7e-47 193.0 114 82.5
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 8.3e-47 191.8 147 68.7
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 4.5e-45 186.0 128 74.2
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 7.2e-43 178.7 269 41.3
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 8.0e-42 175.3 233 43.3
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 4.4e-40 169.5 97 81.4
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.3e-39 167.9 181 50.8
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 2.2e-39 167.2 262 36.3
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.1e-38 164.9 139 61.9
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 1.5e-35 154.5 144 55.6
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 4.3e-35 152.9 153 51.0
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 3.1e-33 146.7 202 42.6
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.5e-32 144.4 147 51.0
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.5e-29 133.3 127 52.8
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 3.5e-29 133.3 82 73.2
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 8.6e-28 128.6 176 39.8
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 9.5e-27 125.2 117 56.4
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 2.1e-26 124.0 131 47.3
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 1.1e-25 121.7 198 42.9
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 4.4e-24 116.3 68 83.8
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 3.6e-18 96.7 87 58.6
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 3.6e-18 96.7 87 58.6
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 8.1e-18 95.5 76 63.2
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 2.9e-15 87.0 61 78.7
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 4.6e-13 79.7 121 44.6
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 7.3e-11 72.4 59 61.0
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 2.4e-09 67.4 54 61.1
SalBow2G0531 Salvia bowleyana HOM05D004465 ORTHO05D351996 2.4e-06 57.4 33 78.8


User provided reference genes

Program Settings