Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1857.4 962 100.0
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1592.0 969 85.1
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1587.0 966 85.5
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1578.9 969 83.5
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1573.5 962 85.1
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1572.4 964 83.5
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1557.0 961 82.0
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1554.3 960 82.3
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1552.0 920 84.0
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1550.8 921 83.8
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1545.0 921 82.6
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1538.5 966 80.5
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1537.7 956 80.2
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1536.2 960 80.7
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1534.2 977 79.5
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1533.9 964 81.2
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1531.2 969 80.3
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1530.0 961 81.2
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1526.9 960 80.9
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1526.1 962 80.7
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1523.5 961 81.2
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1521.5 962 80.4
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1520.0 962 81.1
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1519.2 969 80.6
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1517.7 967 79.8
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1517.3 966 80.4
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1516.5 989 79.1
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1516.1 968 78.9
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1516.1 964 81.0
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1515.4 966 80.5
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1515.0 958 81.2
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1513.0 962 78.9
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1512.7 960 81.7
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1512.3 966 80.0
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1512.3 961 78.9
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1511.9 920 81.0
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1511.9 961 79.2
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1511.9 963 80.7
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1511.1 972 79.8
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1509.6 968 79.6
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1507.3 963 79.5
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1506.9 963 79.8
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1505.7 967 80.0
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1505.7 961 79.3
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1505.7 966 79.5
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1505.3 966 79.7
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1501.9 964 79.9
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1501.9 963 79.0
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1500.7 965 78.5
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1500.3 960 78.5
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1500.0 959 78.8
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1498.4 963 78.7
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1498.4 959 79.8
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1497.6 963 78.6
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1496.5 1189 68.4
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1495.7 967 80.0
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1495.3 959 78.7
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1494.6 961 78.8
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1493.8 958 78.7
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1493.4 960 78.5
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1489.9 982 77.7
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1485.7 968 77.6
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1483.8 963 77.5
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1483.0 960 78.6
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1478.4 965 79.0
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1477.6 968 78.7
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1476.8 923 79.5
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1476.5 965 77.1
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1474.5 929 80.0
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1473.8 970 78.6
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1472.2 963 79.3
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1471.8 960 77.7
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1464.1 928 78.7
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1462.2 970 78.1
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1457.6 928 76.2
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1453.3 963 77.9
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1443.3 929 78.6
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1440.2 909 80.0
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1439.9 972 77.0
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1436.0 963 76.7
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1435.6 972 77.0
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1435.2 958 77.2
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1435.2 988 74.4
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1433.7 837 84.6
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1429.1 972 76.7
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1423.7 964 75.6
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1416.7 971 76.5
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1416.4 984 75.6
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1412.1 987 75.4
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1412.1 987 75.4
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1411.0 957 74.8
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1405.6 973 74.8
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1401.3 963 72.7
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1400.6 848 80.7
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1398.6 970 75.3
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1391.7 973 74.6
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1387.9 963 72.6
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1383.2 964 73.5
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1377.1 979 74.0
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1375.1 965 73.6
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1372.1 982 73.2
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1359.7 972 74.0
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1357.0 958 71.1
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1354.0 955 70.2
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1352.4 930 72.7
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1352.4 925 73.2
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1319.7 918 70.3
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1300.4 905 72.0
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1286.9 968 67.1
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1284.6 794 81.0
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1279.6 788 81.3
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1249.2 728 84.8
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1196.4 936 63.2
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1191.8 949 64.7
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1180.6 785 73.1
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1149.0 696 83.2
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 0.0e+00 1117.1 956 62.7
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1107.4 988 59.1
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1083.2 967 58.0
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1078.5 986 55.8
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 2.0e-311 1072.4 720 76.9
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 2.8e-289 998.8 662 76.4
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 1.0e-267 927.2 673 72.5
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.4e-267 926.8 796 57.9
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 2.4e-264 916.0 592 78.2
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 4.6e-247 858.6 565 77.9
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 4.5e-234 815.5 528 78.0
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 4.5e-226 788.9 603 69.0
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 5.1e-206 722.2 503 72.0
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 9.7e-205 718.0 441 82.8
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 5.7e-181 639.0 412 79.6
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.4e-179 634.4 390 80.8
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 1.0e-174 618.2 986 38.5
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 3.0e-145 520.4 419 62.3
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 2.2e-140 504.2 830 38.3
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 5.4e-139 499.6 420 59.3
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.5e-120 438.3 253 82.6
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 4.2e-115 420.2 406 57.6
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 1.2e-114 418.7 227 88.5
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 6.2e-103 379.8 1056 27.4
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.3e-100 372.1 845 31.8
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 4.6e-98 363.6 283 65.0
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 4.3e-88 330.5 253 66.0
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 1.5e-85 322.0 257 62.6
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 1.5e-85 322.0 257 62.6
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 4.5e-85 320.5 369 44.2
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 2.6e-80 304.7 303 56.1
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 4.5e-61 240.7 148 75.0
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 3.0e-49 201.4 149 64.4
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 3.0e-49 201.4 149 64.4
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.7e-47 195.7 178 49.4
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 9.2e-46 189.9 139 64.7
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.7e-45 188.3 118 76.3
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 1.9e-43 182.2 167 53.3
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 2.8e-42 178.3 240 47.1
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 2.0e-40 172.2 107 79.4
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 1.6e-37 162.5 141 48.9
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 3.9e-36 157.9 111 68.5
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 6.8e-33 147.1 128 60.2
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 1.2e-32 146.4 103 68.9
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 2.6e-32 145.2 97 74.2
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 2.9e-31 141.7 88 78.4
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.4e-30 139.4 80 82.5
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.4e-30 138.7 79 84.8
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.2e-30 138.3 80 82.5
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.1e-30 137.9 80 81.2
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 7.8e-29 133.7 137 51.8
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.3e-28 132.9 82 78.0
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.9e-28 131.3 78 80.8
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 7.3e-27 127.1 111 51.4
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 8.9e-25 120.2 104 59.6
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 4.4e-24 117.9 60 88.3
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 5.8e-24 117.5 82 73.2
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 7.5e-24 117.1 587 22.7
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 2.2e-23 115.5 126 44.4
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 8.3e-23 113.6 69 82.6
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 2.2e-15 89.0 132 53.8
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 6.0e-13 80.9 56 64.3
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 5.1e-12 77.8 82 50.0
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 4.8e-10 71.2 39 74.4
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 6.9e-09 67.4 177 33.3
HanXRQChr15g0465621 Helianthus annuus HOM05D003791 ORTHO05D019539 2.0e-08 65.9 64 51.6
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 1.4e-06 59.7 42 64.3


User provided reference genes

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