Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047944 Camellia sinensis var. sinensis HOM05D004988 ORTHO05D005845 1.2e-89 333.2 168 100.0
CSS0026270 Camellia sinensis var. sinensis HOM05D004988 ORTHO05D005845 1.8e-77 292.7 156 94.2
CSS0035479 Camellia sinensis var. sinensis HOM05D004988 ORTHO05D005845 6.7e-77 290.8 156 93.6
Actinidia35358 Actinidia chinensis HOM05D004988 ORTHO05D005845 1.6e-70 269.6 155 86.5
Dinv40770 Davidia involucrata HOM05D004988 ORTHO05D005845 4.6e-70 268.1 156 83.3
RhsimUnG0249000 Rhododendron simsii HOM05D004988 ORTHO05D005845 8.7e-69 263.8 156 82.7
GSVIVG01037674001 Vitis vinifera HOM05D004988 ORTHO05D005845 5.7e-68 261.2 156 83.3
Hma1.2p1_0036F.1_g023490 Hydrangea macrophylla HOM05D004988 ORTHO05D005845 1.1e-66 256.9 156 79.5
Hma1.2p1_0036F.1_g023500 Hydrangea macrophylla HOM05D004988 ORTHO05D005845 1.1e-66 256.9 156 79.5
Nn1g03486 Nelumbo nucifera HOM05D004988 ORTHO05D005845 2.0e-65 252.7 156 77.6
Prupe.4G216500 Prunus persica HOM05D004988 ORTHO05D005845 1.7e-64 249.6 156 78.8
Atru.chr1.2791 Acer truncatum HOM05D004988 ORTHO05D005845 3.8e-64 248.4 156 78.8
MSTRG.6932 Avicennia marina HOM05D004988 ORTHO05D005845 8.4e-64 247.3 157 79.0
Ciclev10010304m.g Citrus clementina HOM05D004988 ORTHO05D005845 1.1e-63 246.9 156 77.6
Migut.M01745 Erythranthe guttata HOM05D004988 ORTHO05D005845 1.4e-63 246.5 156 78.8
RcHm_v2.0_Chr5g0040391 Rosa chinensis HOM05D004988 ORTHO05D005845 1.9e-63 246.1 156 78.2
HanXRQChr03g0079801 Helianthus annuus HOM05D004988 ORTHO05D005845 2.5e-63 245.7 156 78.2
HanXRQChr03g0079751 Helianthus annuus HOM05D004988 ORTHO05D005845 3.2e-63 245.4 156 78.2
Aqoxy1G03129 Aquilegia oxysepala HOM05D004988 ORTHO05D005845 4.2e-63 245.0 156 76.3
HanXRQChr05g0152621 Helianthus annuus HOM05D004988 ORTHO05D005845 4.2e-63 245.0 156 78.2
Haze_09701 Corylus avellana HOM05D004988 ORTHO05D005845 9.3e-63 243.8 156 79.5
Cc05_g13960 Coffea canephora HOM05D004988 ORTHO05D005845 1.6e-62 243.0 155 76.1
FAN21G3129 Fragaria x ananassa HOM05D004988 ORTHO05D005845 2.7e-62 242.3 156 76.9
FAN25G1441 Fragaria x ananassa HOM05D004988 ORTHO05D005845 3.5e-62 241.9 156 76.9
Sc16g0005920 Simmondsia chinensis HOM05D004988 ORTHO05D005845 3.5e-62 241.9 156 74.4
MD11G1214700 Malus domestica HOM05D004988 ORTHO05D005845 6.1e-62 241.1 156 76.3
QL08p009463 Quercus lobata HOM05D004988 ORTHO05D005845 7.9e-62 240.7 156 76.3
FAN11G0321 Fragaria x ananassa HOM05D004988 ORTHO05D005845 1.8e-61 239.6 156 75.6
FvH4_3g23000 Fragaria vesca HOM05D004988 ORTHO05D005845 8.7e-61 237.3 155 76.1
ECA240G2090 Erigeron canadensis HOM05D004988 ORTHO05D005845 1.1e-60 236.9 156 75.0
Manes.03G131500 Manihot esculenta HOM05D004988 ORTHO05D005845 1.5e-60 236.5 155 71.6
Cfa020320 Carpinus fangiana HOM05D004988 ORTHO05D005845 1.9e-60 236.1 156 77.6
Peaxi162Scf00350g00216 Petunia axillaris HOM05D004988 ORTHO05D005845 3.3e-60 235.3 156 74.4
Oeu062583.1 Olea europaea HOM05D004988 ORTHO05D005845 4.3e-60 235.0 156 76.3
SGA_v2.0_scaffold36G14386 Striga asiatica HOM05D004988 ORTHO05D005845 5.7e-60 234.6 154 77.3
FAN16G3602 Fragaria x ananassa HOM05D004988 ORTHO05D005845 7.4e-60 234.2 156 75.0
Lsat_1_v5_gn_9_90520 Lactuca sativa HOM05D004988 ORTHO05D005845 7.4e-60 234.2 156 74.4
Potri.011G089500 Populus trichocarpa HOM05D004988 ORTHO05D005845 1.3e-59 233.4 156 73.1
Sed0003845 Sechium edule HOM05D004988 ORTHO05D005845 1.6e-59 233.0 156 72.4
Sopen10g008290 Solanum pennellii HOM05D004988 ORTHO05D005845 1.6e-59 233.0 156 75.0
EL10Ac4g07775 Beta vulgaris HOM05D004988 ORTHO05D005845 4.8e-59 231.5 155 71.6
Thecc.07G033400 Theobroma cacao HOM05D004988 ORTHO05D005845 4.8e-59 231.5 155 74.8
AUR62015808 Chenopodium quinoa HOM05D004988 ORTHO05D005845 8.2e-59 230.7 156 71.8
CAN.G1568.1 Capsicum annuum HOM05D004988 ORTHO05D005845 1.1e-58 230.3 156 71.2
FAN25G2375 Fragaria x ananassa HOM05D004988 ORTHO05D005845 1.1e-58 230.3 156 75.0
LjContig00272g0019234 Lotus japonicus HOM05D004988 ORTHO05D005845 1.1e-58 230.3 156 71.2
Lalb_Chr04g0248341 Lupinus albus HOM05D004988 ORTHO05D005845 1.1e-58 230.3 156 71.2
Nitab4.5_0000882g0070 Nicotiana tabacum HOM05D004988 ORTHO05D005845 1.4e-58 229.9 158 73.4
Solyc10g018530.2 Solanum lycopersicum HOM05D004988 ORTHO05D005845 1.4e-58 229.9 156 73.7
TPR.G1199 Trifolium pratense HOM05D004988 ORTHO05D005845 2.4e-58 229.2 156 71.8
arahy.Tifrunner.gnm1.ann1.E8M5A0 Arachis hypogaea HOM05D004988 ORTHO05D005845 5.3e-58 228.0 156 71.2
arahy.Tifrunner.gnm1.ann1.ZUJ4QN Arachis hypogaea HOM05D004988 ORTHO05D005845 5.3e-58 228.0 156 71.2
Glyma.14G022400 Glycine max HOM05D004988 ORTHO05D005845 6.9e-58 227.6 156 71.2
unitig_578.g15992 Utricularia gibba HOM05D004988 ORTHO05D005845 6.9e-58 227.6 155 72.9
AL3G34200 Arabidopsis lyrata HOM05D004988 ORTHO05D005845 2.6e-57 225.7 155 72.3
PSO541G0855 Papaver somniferum HOM05D004988 ORTHO05D005845 2.6e-57 225.7 156 71.8
Psat2g012000 Pisum sativum HOM05D004988 ORTHO05D005845 2.6e-57 225.7 156 70.5
Sp3g18490 Schrenkiella parvula HOM05D004988 ORTHO05D005845 2.6e-57 225.7 155 72.3
Eucgr.F00744 Eucalyptus grandis HOM05D004988 ORTHO05D005845 5.9e-57 224.6 156 69.9
AT3G20475 Arabidopsis thaliana HOM05D004988 ORTHO05D005845 7.7e-57 224.2 155 71.6
CANSAT11G0463 Cannabis sativa HOM05D004988 ORTHO05D005845 1.0e-56 223.8 156 71.8
Duzib213G0327 Durio zibethinus HOM05D004988 ORTHO05D005845 1.3e-56 223.4 155 71.6
Thhalv10022259m.g Eutrema salsugineum HOM05D004988 ORTHO05D005845 2.2e-56 222.6 155 71.6
Medtr5g093110 Medicago truncatula HOM05D004988 ORTHO05D005845 2.2e-56 222.6 156 69.2
Carub.0003s2042 Capsella rubella HOM05D004988 ORTHO05D005845 2.9e-56 222.2 155 71.0
THA.LOC104817863 Tarenaya hassleriana HOM05D004988 ORTHO05D005845 2.9e-56 222.2 155 69.7
Gohir.A04G013900 Gossypium hirsutum HOM05D004988 ORTHO05D005845 6.5e-56 221.1 155 70.3
Hund02015 Selenicereus undatus HOM05D004988 ORTHO05D005845 1.4e-55 219.9 186 62.4
Gohir.D05G372400 Gossypium hirsutum HOM05D004988 ORTHO05D005845 1.9e-55 219.5 155 70.3
A05p28340 Brassica napus HOM05D000284 ORTHO05D005845 4.2e-55 218.4 155 69.0
BraA05t21720Z Brassica rapa HOM05D004988 ORTHO05D005845 4.2e-55 218.4 155 69.0
PGR083G2184 Punica granatum HOM05D004988 ORTHO05D005845 5.5e-55 218.0 156 71.8
VMungo0647G1120 Vigna mungo HOM05D004988 ORTHO05D005845 2.1e-54 216.1 156 67.9
AUR62020409 Chenopodium quinoa HOM05D004988 ORTHO05D005845 3.6e-54 215.3 156 68.6
BolC5t33100H Brassica oleracea HOM05D004988 ORTHO05D005845 4.6e-54 214.9 155 67.7
C05p43830 Brassica napus HOM05D000284 ORTHO05D005845 1.0e-53 213.8 155 67.1
TAR626G1959 Trochodendron aralioides HOM05D004988 ORTHO05D005845 1.0e-53 213.8 130 83.1
BcaNung06350 Brassica carinata HOM05D004988 ORTHO05D005845 6.7e-53 211.1 155 66.5
Aa31LG8G7300 Aethionema arabicum HOM05D004988 ORTHO05D005845 1.5e-52 209.9 153 68.0
TWI38G0959 Tripterygium wilfordii HOM05D004988 ORTHO05D005845 1.5e-52 209.9 219 54.8
CiPaw.11G191700 Carya illinoinensis HOM05D004988 ORTHO05D005845 3.3e-52 208.8 156 71.2
Gorai.009G440600 Gossypium raimondii HOM05D004988 ORTHO05D005845 3.1e-50 202.2 155 67.1
ClCG10G004940 Citrullus lanatus HOM05D004988 ORTHO05D005845 2.6e-49 199.1 218 51.8
Sabra11G0079200 Salix brachista HOM05D004988 ORTHO05D005845 4.5e-49 198.4 217 52.5
ATR0794G119 Amborella trichopoda HOM05D004988 ORTHO05D005845 1.7e-48 196.4 156 66.7
HPP92_001600 Vanilla planifolia HOM05D004988 ORTHO05D005845 3.2e-47 192.2 158 62.7
MBI18_g26501_MAGBIO Magnolia biondii HOM05D004988 ORTHO05D005845 4.2e-47 191.8 130 72.3
Nitab4.5_0007776g0010 Nicotiana tabacum HOM05D004988 ORTHO05D005845 4.2e-47 191.8 156 64.1
Zm00001eb352670 Zea mays HOM05D004988 ORTHO05D005845 9.4e-47 190.7 156 61.5
Os05g0498300 Oryza sativa ssp. japonica HOM05D004988 ORTHO05D005845 1.0e-45 187.2 156 59.6
CARHR096230 Cardamine hirsuta HOM05D004988 ORTHO05D005845 1.4e-45 186.8 155 61.9
TPR.G29016 Trifolium pratense HOM05D004988 ORTHO05D005845 1.1e-44 183.7 130 69.2
CsaV3_3G004590 Cucumis sativus L. HOM05D004988 ORTHO05D005845 4.4e-44 181.8 181 56.9
Phvul.008G268900 Phaseolus vulgaris HOM05D004988 ORTHO05D005845 1.3e-43 180.3 132 67.4
PGR083G0916 Punica granatum HOM05D004988 ORTHO05D005845 4.5e-41 171.8 160 60.0
Sabra11G0073600 Salix brachista HOM05D004988 ORTHO05D005845 3.8e-40 168.7 165 57.6
Zm00001eb352660 Zea mays HOM05D004988 ORTHO05D005845 1.1e-39 167.2 139 61.2
Ca_06330_v3 Cicer arietinum L. HOM05D004988 ORTHO05D005845 2.5e-39 166.0 158 55.7
Ca_30701_v3 Cicer arietinum L. HOM05D004988 ORTHO05D005845 2.5e-39 166.0 158 55.7
vmacro09701 Vaccinium macrocarpon HOM05D004988 ORTHO05D005845 5.5e-39 164.9 156 60.3
HPP92_001598 Vanilla planifolia HOM05D004988 ORTHO05D005845 1.6e-38 163.3 132 63.6
DCAR_009454 Daucus carota HOM05D004988 ORTHO05D005845 8.0e-38 161.0 156 56.4
HanXRQChr03g0079771 Helianthus annuus HOM05D004988 ORTHO05D005845 3.6e-30 135.6 86 76.7
AagrBONN_evm.TU.Sc2ySwM_344.3443 Anthoceros agrestis HOM05D004988 ORTHO05D005845 1.5e-28 130.2 158 45.6
Lj1C875G1 Lonicera japonica HOM05D004988 ORTHO05D005845 4.1e-26 122.1 98 62.2
SMO340G0188 Selaginella moellendorffii HOM05D004988 ORTHO05D005845 2.7e-25 119.4 149 45.6
Glyma.02G292202 Glycine max HOM05D004988 ORTHO05D005845 4.5e-25 118.6 91 62.6
HPP92_001589 Vanilla planifolia HOM05D004988 ORTHO05D005845 1.5e-23 113.6 175 41.7
AL3G33310 Arabidopsis lyrata HOM05D004988 ORTHO05D005845 1.6e-22 110.2 81 70.4
Pp3c2_9530 Physcomitrium patens HOM05D004988 ORTHO05D005845 2.6e-20 102.8 159 40.9
Mapoly0055s0066 Marchantia polymorpha HOM05D004988 ORTHO05D005845 1.8e-18 96.7 142 38.7
AL3G33270 Arabidopsis lyrata HOM05D004988 ORTHO05D005845 1.2e-17 94.0 67 67.2
MELO3C032293.2 Cucumis melo HOM05D004988 ORTHO05D005845 3.4e-12 75.9 43 81.4
COL.COLO4_09682 Corchorus olitorius HOM05D004988 ORTHO05D005845 9.8e-12 74.3 129 38.0
Cre17.g713650 Chlamydomonas reinhardtii HOM05D004988 ORTHO05D005845 9.5e-07 57.8 176 24.4


User provided reference genes

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