Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045945 Camellia sinensis var. sinensis HOM05D006139 ORTHO05D007681 0.0e+00 1239.9 629 100.0
Hma1.2p1_0412F.1_g147150 Hydrangea macrophylla HOM05D006139 ORTHO05D007681 5.4e-305 1050.4 629 82.2
Rhsim07G0086500 Rhododendron simsii HOM05D006139 ORTHO05D007681 7.8e-304 1046.6 720 74.7
Potri.011G107400 Populus trichocarpa HOM05D006139 ORTHO05D007681 1.9e-297 1025.4 629 80.0
GSVIVG01031668001 Vitis vinifera HOM05D006139 ORTHO05D007681 1.3e-290 1002.7 629 79.7
QL10p044141 Quercus lobata HOM05D006139 ORTHO05D007681 4.9e-290 1000.7 662 75.5
Ciclev10019318m.g Citrus clementina HOM05D006139 ORTHO05D007681 2.1e-288 995.3 629 78.9
Sabra11G0095200 Salix brachista HOM05D006139 ORTHO05D007681 3.5e-288 994.6 637 77.7
TAR365G1167 Trochodendron aralioides HOM05D006139 ORTHO05D007681 3.5e-288 994.6 605 80.8
Prupe.1G178000 Prunus persica HOM05D006139 ORTHO05D007681 3.0e-287 991.5 629 77.7
Aqoxy2G03950 Aquilegia oxysepala HOM05D006139 ORTHO05D007681 2.0e-283 978.8 633 76.0
Migut.N00440 Erythranthe guttata HOM05D006139 ORTHO05D007681 4.4e-283 977.6 629 77.4
Sc22g0003230 Simmondsia chinensis HOM05D006139 ORTHO05D007681 9.9e-283 976.5 628 76.9
CANSAT11G1108 Cannabis sativa HOM05D006139 ORTHO05D007681 1.9e-281 972.2 629 76.6
Manes.03G099000 Manihot esculenta HOM05D006139 ORTHO05D007681 2.4e-281 971.8 629 76.0
CiPaw.01G108300 Carya illinoinensis HOM05D006139 ORTHO05D007681 4.1e-281 971.1 629 76.6
CsaV3_4G003770 Cucumis sativus L. HOM05D006139 ORTHO05D007681 4.1e-281 971.1 629 76.2
Sopen09g036170 Solanum pennellii HOM05D006139 ORTHO05D007681 4.6e-280 967.6 629 76.0
TWI38G2388 Tripterygium wilfordii HOM05D006139 ORTHO05D007681 7.8e-280 966.8 629 75.8
MD13G1278700 Malus domestica HOM05D006139 ORTHO05D007681 3.0e-279 964.9 629 76.0
SGA_v2.0_scaffold109G31142 Striga asiatica HOM05D006139 ORTHO05D007681 3.0e-279 964.9 632 75.5
Cc03_g10570 Coffea canephora HOM05D006139 ORTHO05D007681 5.1e-279 964.1 629 75.0
Solyc09g098230.3 Solanum lycopersicum HOM05D006139 ORTHO05D007681 6.6e-279 963.8 629 76.0
RcHm_v2.0_Chr4g0409801 Rosa chinensis HOM05D006139 ORTHO05D007681 2.5e-278 961.8 629 76.3
Nn3g20967 Nelumbo nucifera HOM05D006139 ORTHO05D007681 3.3e-278 961.4 611 77.7
Sed0017452 Sechium edule HOM05D006139 ORTHO05D007681 7.3e-278 960.3 629 74.6
MSTRG.17865 Avicennia marina HOM05D006139 ORTHO05D007681 9.6e-278 959.9 629 76.5
MELO3C017678.2 Cucumis melo HOM05D006139 ORTHO05D007681 2.1e-277 958.7 629 75.5
Eucgr.F03241 Eucalyptus grandis HOM05D006139 ORTHO05D007681 2.8e-277 958.4 629 75.2
ECA246G3778 Erigeron canadensis HOM05D006139 ORTHO05D007681 8.1e-277 956.8 630 75.1
Thecc.07G123700 Theobroma cacao HOM05D006139 ORTHO05D007681 8.1e-277 956.8 629 74.4
Duzib213G0841 Durio zibethinus HOM05D006139 ORTHO05D007681 3.1e-276 954.9 629 75.2
Lsat_1_v5_gn_3_24941 Lactuca sativa HOM05D006139 ORTHO05D007681 8.9e-276 953.4 629 74.4
PSO017G2886 Papaver somniferum HOM05D006139 ORTHO05D007681 4.2e-273 944.5 628 73.1
PSO675G6876 Papaver somniferum HOM05D006139 ORTHO05D007681 4.2e-273 944.5 628 73.4
Lalb_Chr06g0164661 Lupinus albus HOM05D006139 ORTHO05D007681 3.9e-271 937.9 631 73.5
FvH4_4g12150 Fragaria vesca HOM05D006139 ORTHO05D007681 1.5e-270 936.0 629 73.6
Gohir.A01G052100 Gossypium hirsutum HOM05D006139 ORTHO05D007681 1.9e-270 935.6 629 74.4
FAN12G2778 Fragaria x ananassa HOM05D006139 ORTHO05D007681 2.5e-270 935.3 629 73.6
Gorai.002G052100 Gossypium raimondii HOM05D006139 ORTHO05D007681 3.3e-270 934.9 629 74.1
arahy.Tifrunner.gnm1.ann1.46LBLY Arachis hypogaea HOM05D006139 ORTHO05D007681 3.2e-265 918.3 630 72.2
Glyma.20G248800 Glycine max HOM05D006139 ORTHO05D007681 2.1e-261 905.6 636 71.5
Psat6g243280 Pisum sativum HOM05D006139 ORTHO05D007681 5.8e-259 897.5 630 70.2
Hund19684 Selenicereus undatus HOM05D006139 ORTHO05D007681 6.0e-256 887.5 629 70.9
PGR031G2404 Punica granatum HOM05D006139 ORTHO05D007681 1.0e-255 886.7 630 67.9
VMungo0720G1636 Vigna mungo HOM05D006139 ORTHO05D007681 1.8e-255 885.9 631 69.7
Medtr1g116980 Medicago truncatula HOM05D006139 ORTHO05D007681 3.9e-255 884.8 627 68.9
Lj5g0023092 Lotus japonicus HOM05D006139 ORTHO05D007681 2.5e-254 882.1 628 69.6
Carub.0001s1670 Capsella rubella HOM05D006139 ORTHO05D007681 1.3e-253 879.8 628 68.6
AT1G16970 Arabidopsis thaliana HOM05D006139 ORTHO05D007681 1.6e-253 879.4 630 69.0
Sp1g15110 Schrenkiella parvula HOM05D006139 ORTHO05D007681 1.6e-253 879.4 629 68.8
Thhalv10007085m.g Eutrema salsugineum HOM05D006139 ORTHO05D007681 6.2e-253 877.5 629 68.5
Gohir.D01G041500 Gossypium hirsutum HOM05D006139 ORTHO05D007681 2.4e-252 875.5 590 74.2
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 3.1e-252 875.2 629 68.8
vmacro13984 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 3.1e-252 875.2 740 64.5
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 1.2e-251 873.2 629 68.5
Dinv44237 Davidia involucrata HOM05D006139 ORTHO05D007681 2.0e-251 872.5 494 86.0
CARHR017480 Cardamine hirsuta HOM05D006139 ORTHO05D007681 8.4e-250 867.1 630 68.1
A06p12870 Brassica napus HOM05D006139 ORTHO05D007681 4.2e-249 864.8 629 68.0
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 5.5e-249 864.4 629 68.0
Zm00001eb116810 Zea mays HOM05D006139 ORTHO05D007681 1.0e-247 860.1 631 65.9
FAN12G0395 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.8e-247 859.4 641 68.5
Lj4A728T41 Lonicera japonica HOM05D006139 ORTHO05D007681 6.7e-247 857.4 596 73.0
THA.LOC104812308 Tarenaya hassleriana HOM05D006139 ORTHO05D007681 6.7e-247 857.4 628 67.5
FAN17G0552 Fragaria x ananassa HOM05D006139 ORTHO05D007681 8.7e-247 857.1 629 69.0
Phvul.007G001600 Phaseolus vulgaris HOM05D006139 ORTHO05D007681 1.5e-246 856.3 630 68.7
FAN07G2792 Fragaria x ananassa HOM05D006139 ORTHO05D007681 5.7e-246 854.4 640 68.0
AUR62018029 Chenopodium quinoa HOM05D006139 ORTHO05D007681 1.4e-241 839.7 650 65.7
CAN.G710.40 Capsicum annuum HOM05D006139 ORTHO05D007681 3.6e-240 835.1 641 68.2
ATR0609G005 Amborella trichopoda HOM05D006139 ORTHO05D007681 2.5e-238 828.9 632 65.0
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 1.6e-237 826.2 632 65.8
arahy.Tifrunner.gnm1.ann1.JAL8JD Arachis hypogaea HOM05D006139 ORTHO05D007681 6.3e-237 824.3 640 66.7
BraA06t24447Z Brassica rapa HOM05D006139 ORTHO05D007681 1.2e-235 820.1 629 65.7
AUR62003718 Chenopodium quinoa HOM05D006139 ORTHO05D007681 2.7e-232 808.9 612 67.3
Haze_11079 Corylus avellana HOM05D006139 ORTHO05D007681 3.7e-229 798.5 631 67.0
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 5.9e-227 791.2 646 64.2
MBI07_g00628_MAGBIO Magnolia biondii HOM05D006139 ORTHO05D007681 2.1e-224 782.7 629 64.9
Nitab4.5_0001687g0050 Nicotiana tabacum HOM05D006139 ORTHO05D007681 5.0e-210 734.9 591 65.1
Nitab4.5_0001526g0130 Nicotiana tabacum HOM05D006139 ORTHO05D007681 2.6e-206 722.6 647 60.6
Peaxi162Scf00286g00443 Petunia axillaris HOM05D006139 ORTHO05D007681 1.4e-204 716.8 629 62.3
ClCG07G016640 Citrullus lanatus HOM05D006139 ORTHO05D007681 1.8e-199 699.9 654 59.9
Mapoly0113s0020 Marchantia polymorpha HOM05D006139 ORTHO05D007681 9.5e-185 651.0 626 52.9
Oeu013397.2 Olea europaea HOM05D006139 ORTHO05D007681 5.2e-183 645.2 403 78.7
HPP92_015930 Vanilla planifolia HOM05D006139 ORTHO05D007681 4.0e-167 592.4 439 67.4
SMO361G0513 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 7.6e-166 588.2 566 51.6
SMO361G0769 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 3.2e-164 582.8 566 51.1
CDE02G2779 Ceratophyllum demersum HOM05D006139 ORTHO05D007681 1.3e-152 544.3 444 63.5
Cpa.g.sc77.50 Carica papaya HOM05D006139 ORTHO05D007681 1.1e-148 531.2 545 54.1
AagrBONN_evm.TU.Sc2ySwM_228.1556 Anthoceros agrestis HOM05D006139 ORTHO05D007681 2.1e-147 526.9 636 45.0
Pp3c18_7140 Physcomitrium patens HOM05D006139 ORTHO05D007681 7.1e-140 501.9 625 44.2
CBR_g19434 Chara braunii HOM05D006139 ORTHO05D007681 2.7e-139 500.0 627 43.5
Atru.chr2.2053 Acer truncatum HOM05D006139 ORTHO05D007681 2.5e-137 493.4 309 78.3
Aa31LG7G1410 Aethionema arabicum HOM05D006139 ORTHO05D007681 2.5e-137 493.4 629 46.9
PGSC0003DMG400014069 Solanum tuberosum HOM05D006139 ORTHO05D007681 1.8e-127 460.7 292 79.1
SHI27652 Sapria himalayana HOM05D006139 ORTHO05D007681 2.7e-123 446.8 360 63.3
Atru.chr2.2052 Acer truncatum HOM05D006139 ORTHO05D007681 3.4e-118 429.9 271 78.2
TPR.G8879 Trifolium pratense HOM05D006139 ORTHO05D007681 1.0e-117 428.3 296 71.3
TPR.G8868 Trifolium pratense HOM05D006139 ORTHO05D007681 1.8e-114 417.5 285 70.2
DCAR_005496 Daucus carota HOM05D006139 ORTHO05D007681 1.2e-91 341.7 232 72.4
DCAR_005495 Daucus carota HOM05D006139 ORTHO05D007681 8.8e-90 335.5 244 70.9
TPR.G8907 Trifolium pratense HOM05D006139 ORTHO05D007681 2.6e-89 334.0 228 71.9
Ca_11423_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 1.7e-88 331.3 244 67.2
SEGI_35314 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 2.2e-88 330.9 247 64.8
unitig_578.g15953 Utricularia gibba HOM05D006139 ORTHO05D007681 9.5e-76 288.9 249 59.0
Os07g0184900 Oryza sativa ssp. japonica HOM05D006139 ORTHO05D007681 3.0e-61 240.7 156 73.1
Ah.03g143030 Amaranthus hybridus HOM05D006139 ORTHO05D007681 6.6e-61 239.6 187 65.2
Cre13.g607500 Chlamydomonas reinhardtii HOM05D006139 ORTHO05D007681 6.6e-61 239.6 708 29.9
FAN22G0061 Fragaria x ananassa HOM05D006139 ORTHO05D007681 4.9e-56 223.4 166 67.5
unitig_578.g15954 Utricularia gibba HOM05D006139 ORTHO05D004041 2.3e-53 214.5 171 63.2
Hund20183 Selenicereus undatus HOM05D006139 ORTHO05D007681 3.3e-52 210.7 189 60.8
Ca_11425_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 8.9e-50 202.6 135 74.8
arahy.Tifrunner.gnm1.ann1.6RHH59 Arachis hypogaea HOM05D006139 ORTHO05D007681 3.5e-46 190.7 137 68.6
Cfa021664 Carpinus fangiana HOM05D006139 ORTHO05D007681 1.4e-42 178.7 607 26.7
CANSAT78G0600 Cannabis sativa HOM05D006139 ORTHO05D007681 2.5e-36 157.9 118 64.4
Ca_11424_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 1.8e-34 151.8 106 69.8
AUR62043732 Chenopodium quinoa HOM05D006139 ORTHO05D007681 1.2e-25 122.5 92 62.0
SEGI_31905 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 6.0e-22 110.2 74 66.2
HanXRQChr13g0406711 Helianthus annuus HOM05D006139 ORTHO05D007681 1.8e-18 98.6 57 80.7
Ah.03g143010 Amaranthus hybridus HOM05D006139 ORTHO05D007681 4.0e-18 97.4 128 45.3
CARHR154100 Cardamine hirsuta HOM05D006139 ORTHO05D007681 6.9e-18 96.7 66 69.7
BolC4t22161H Brassica oleracea HOM05D006139 ORTHO05D007681 3.4e-17 94.4 85 56.5
MCO14G338 Micromonas commoda HOM05D006139 ORTHO05D007681 1.7e-16 92.0 294 28.6
Zm00001eb114470 Zea mays HOM05D006139 ORTHO05D007681 2.2e-16 91.7 65 69.2
vmacro12608 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 3.8e-16 90.9 65 73.8
Potri.006G132501 Populus trichocarpa HOM05D006139 ORTHO05D007681 1.8e-13 82.0 78 56.4
Dinv25612 Davidia involucrata HOM05D000447 ORTHO05D007681 2.5e-12 78.2 73 58.9
SEGI_11325 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 9.7e-12 76.3 65 50.8
Eucgr.L02132 Eucalyptus grandis HOM05D006139 ORTHO05D007681 2.0e-09 68.6 42 78.6


User provided reference genes

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