Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045245 Camellia sinensis var. sinensis HOM05D001674 ORTHO05D008374 6.6e-142 507.3 243 100.0
vmacro17583 Vaccinium macrocarpon HOM05D001674 ORTHO05D008374 1.6e-103 379.8 246 76.4
Rhsim08G0149800 Rhododendron simsii HOM05D000001 ORTHO05D008374 8.7e-102 374.0 246 75.2
Dinv38776 Davidia involucrata HOM05D001674 ORTHO05D008374 1.6e-95 353.2 244 73.8
GSVIVG01007916001 Vitis vinifera HOM05D001674 ORTHO05D008374 9.0e-91 337.4 241 70.1
Cfa019293 Carpinus fangiana HOM05D001674 ORTHO05D008374 2.4e-88 329.3 245 67.3
Haze_07675 Corylus avellana HOM05D001674 ORTHO05D008374 3.5e-87 325.5 245 67.3
MD14G1208200 Malus domestica HOM05D001674 ORTHO05D008374 4.6e-87 325.1 243 66.3
Prupe.5G200300 Prunus persica HOM05D001674 ORTHO05D008374 1.3e-86 323.6 240 67.9
CsaV3_1G002690 Cucumis sativus L. HOM05D001674 ORTHO05D008374 1.8e-86 323.2 241 68.0
ClCG06G015870 Citrullus lanatus HOM05D001674 ORTHO05D008374 8.7e-86 320.9 241 66.8
Sed0002195 Sechium edule HOM05D001674 ORTHO05D008374 5.6e-85 318.2 241 66.0
Oeu032215.1 Olea europaea HOM05D001674 ORTHO05D008374 2.8e-84 315.8 242 65.7
TWI15G0866 Tripterygium wilfordii HOM05D001674 ORTHO05D008374 1.1e-83 313.9 240 66.7
TAR371G1295 Trochodendron aralioides HOM05D001674 ORTHO05D008374 1.1e-83 313.9 245 65.3
Nitab4.5_0002881g0060 Nicotiana tabacum HOM05D001674 ORTHO05D008374 4.0e-83 312.0 239 66.1
Lj9C469T4 Lonicera japonica HOM05D001674 ORTHO05D008374 5.3e-83 311.6 249 63.5
DCAR_026018 Daucus carota HOM05D001674 ORTHO05D008374 9.0e-83 310.8 237 64.6
Manes.06G087800 Manihot esculenta HOM05D001674 ORTHO05D008374 9.0e-83 310.8 244 63.9
MSTRG.9601 Avicennia marina HOM05D001674 ORTHO05D008374 2.0e-82 309.7 241 66.0
CANSAT80G0757 Cannabis sativa HOM05D001674 ORTHO05D008374 5.8e-82 308.1 242 64.9
FvH4_5g14341 Fragaria vesca HOM05D001674 ORTHO05D008374 5.8e-82 308.1 243 63.0
FAN18G2329 Fragaria x ananassa HOM05D001674 ORTHO05D008599 5.8e-82 308.1 243 63.0
RcHm_v2.0_Chr7g0182391 Rosa chinensis HOM05D001674 ORTHO05D008374 5.8e-82 308.1 240 64.6
FAN13G3105 Fragaria x ananassa HOM05D001674 ORTHO05D008599 7.6e-82 307.8 243 63.0
Ciclev10018579m.g Citrus clementina HOM05D001674 ORTHO05D008374 9.9e-82 307.4 241 65.1
Sabra12G0048100 Salix brachista HOM05D001674 ORTHO05D008374 6.4e-81 304.7 244 63.1
Migut.D01671 Erythranthe guttata HOM05D001674 ORTHO05D008374 2.5e-80 302.8 244 62.7
Potri.012G067000 Populus trichocarpa HOM05D001674 ORTHO05D008374 5.5e-80 301.6 245 62.4
Sopen03g034520 Solanum pennellii HOM05D001674 ORTHO05D008374 7.1e-80 301.2 239 66.5
FAN08G0876 Fragaria x ananassa HOM05D001674 ORTHO05D008599 2.7e-79 299.3 246 61.0
Nitab4.5_0004511g0090 Nicotiana tabacum HOM05D001674 ORTHO05D008374 2.3e-78 296.2 258 60.9
SalBow7G3861 Salvia bowleyana HOM05D001674 ORTHO05D008374 8.7e-78 294.3 241 63.5
CAN.G479.34 Capsicum annuum HOM05D001674 ORTHO05D008374 1.5e-77 293.5 245 64.5
Hund09848 Selenicereus undatus HOM05D001674 ORTHO05D008374 1.9e-77 293.1 241 61.8
Atru.chr9.282 Acer truncatum HOM05D001674 ORTHO05D008374 2.5e-77 292.7 237 65.0
Cpa.g.sc2632.1 Carica papaya HOM05D001674 ORTHO05D008374 9.6e-77 290.8 242 59.1
EL10Ac5g11090 Beta vulgaris HOM05D001674 ORTHO05D008374 6.2e-76 288.1 245 60.0
PGR083G1883 Punica granatum HOM05D001674 ORTHO05D008374 1.8e-75 286.6 241 58.9
Lalb_Chr22g0355251 Lupinus albus HOM05D001674 ORTHO05D008374 4.0e-75 285.4 242 59.5
Ah.11g048050 Amaranthus hybridus HOM05D001674 ORTHO05D008374 1.2e-74 283.9 247 57.9
Nn4g23350 Nelumbo nucifera HOM05D001674 ORTHO05D008374 7.6e-74 281.2 237 61.2
SHI26981 Sapria himalayana HOM05D001674 ORTHO05D008374 8.4e-73 277.7 244 57.8
AUR62008488 Chenopodium quinoa HOM05D001674 ORTHO05D008374 2.5e-72 276.2 243 60.1
Eucgr.B00565 Eucalyptus grandis HOM05D001674 ORTHO05D008374 9.3e-72 274.2 253 55.7
Thecc.03G096600 Theobroma cacao HOM05D001674 ORTHO05D008374 2.1e-71 273.1 247 59.1
AUR62021607 Chenopodium quinoa HOM05D001674 ORTHO05D008374 2.3e-70 269.6 240 59.2
Gohir.A03G068966 Gossypium hirsutum HOM05D001674 ORTHO05D008374 5.1e-70 268.5 245 58.8
Cc00_g02240 Coffea canephora HOM05D001674 ORTHO05D008374 8.7e-70 267.7 242 57.9
SGA_v2.0_scaffold65G22108 Striga asiatica HOM05D001674 ORTHO05D008374 5.7e-69 265.0 248 58.9
Sc12g0006560 Simmondsia chinensis HOM05D001674 ORTHO05D008374 7.4e-69 264.6 250 58.0
Gohir.D03G095500 Gossypium hirsutum HOM05D001674 ORTHO05D008374 2.8e-68 262.7 245 56.3
Gorai.003G100200 Gossypium raimondii HOM05D001674 ORTHO05D008374 8.2e-68 261.2 245 55.9
PSO017G4168 Papaver somniferum HOM05D001674 ORTHO05D008374 8.2e-68 261.2 237 55.7
Phvul.009G190731 Phaseolus vulgaris HOM05D001674 ORTHO05D008374 2.4e-67 259.6 252 54.8
Aqoxy3G00457 Aquilegia oxysepala HOM05D001674 ORTHO05D008374 4.1e-67 258.8 237 57.8
THA.LOC104818327 Tarenaya hassleriana HOM05D001674 ORTHO05D008374 7.7e-66 254.6 242 56.6
MELO3C017204.2 Cucumis melo HOM05D001674 ORTHO05D008374 1.7e-65 253.4 241 58.1
VMungo1309G2923 Vigna mungo HOM05D001674 ORTHO05D008374 6.5e-65 251.5 252 52.8
CARHR205370 Cardamine hirsuta HOM05D001674 ORTHO05D008374 5.5e-64 248.4 240 52.5
Sp6g35120 Schrenkiella parvula HOM05D001674 ORTHO05D008374 5.5e-64 248.4 240 53.8
AL6G18150 Arabidopsis lyrata HOM05D001674 ORTHO05D008374 1.6e-63 246.9 240 53.3
Psat5g198440 Pisum sativum HOM05D001674 ORTHO05D008374 4.6e-63 245.4 244 55.3
AT5G07810 Arabidopsis thaliana HOM05D001674 ORTHO05D008374 1.4e-62 243.8 240 52.1
TPR.G12256 Trifolium pratense HOM05D001674 ORTHO05D008374 3.0e-62 242.7 242 54.5
Thhalv10012481m.g Eutrema salsugineum HOM05D001674 ORTHO05D008374 5.1e-62 241.9 240 52.9
Lsat_1_v5_gn_5_21720 Lactuca sativa HOM05D001674 ORTHO05D008374 8.8e-62 241.1 226 54.9
Lj1g0003467 Lotus japonicus HOM05D001674 ORTHO05D008374 2.8e-60 236.1 243 52.3
Aa31LG3G18650 Aethionema arabicum HOM05D001674 ORTHO05D008374 4.8e-60 235.3 237 52.7
unitig_0.g11 Utricularia gibba HOM05D001674 ORTHO05D008374 4.8e-60 235.3 237 54.0
Carub.0006s0673 Capsella rubella HOM05D001674 ORTHO05D008374 1.4e-59 233.8 241 51.0
Glyma.06G199800 Glycine max HOM05D001674 ORTHO05D008374 2.4e-59 233.0 259 51.0
HanXRQChr14g0426861 Helianthus annuus HOM05D001674 ORTHO05D008374 3.1e-59 232.6 226 54.0
ATR0064G032 Amborella trichopoda HOM05D001674 ORTHO05D008374 5.3e-59 231.9 238 51.3
BraA03t09697Z Brassica rapa HOM05D001674 ORTHO05D008374 5.5e-56 221.9 212 51.9
A03p03470 Brassica napus HOM05D001674 ORTHO05D008374 2.1e-55 219.9 212 51.4
BolC3t12927H Brassica oleracea HOM05D001674 ORTHO05D008374 2.1e-55 219.9 212 50.9
C03p03890 Brassica napus HOM05D001674 ORTHO05D008374 6.7e-54 214.9 212 50.9
HPP92_013437 Vanilla planifolia HOM05D001674 ORTHO05D008374 5.3e-51 205.3 244 48.0
arahy.Tifrunner.gnm1.ann1.1X400K Arachis hypogaea HOM05D001674 ORTHO05D008374 1.2e-50 204.1 241 49.4
arahy.Tifrunner.gnm1.ann1.D3EHI2 Arachis hypogaea HOM05D001674 ORTHO05D008374 1.2e-50 204.1 241 49.4
Peaxi162Scf00201g00024 Petunia axillaris HOM05D001674 ORTHO05D008374 1.9e-48 196.8 123 74.8
Os07g0598300 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D008374 6.5e-41 171.8 231 42.9
Zm00001eb326710 Zea mays HOM05D001674 ORTHO05D008374 7.2e-40 168.3 269 40.1
Ca_13630_v3 Cicer arietinum L. HOM05D001674 ORTHO05D008374 4.0e-38 162.5 121 66.9
Actinidia09242 Actinidia chinensis HOM05D001674 ORTHO05D008374 4.1e-35 152.5 144 55.6
CDE04G0389 Ceratophyllum demersum HOM05D001674 ORTHO05D008374 1.1e-32 144.4 122 56.6
SEGI_29143 Sequoiadendron giganteum HOM05D001674 ORTHO05D008374 2.2e-28 130.2 126 46.0
Pp3c1_13300 Physcomitrium patens HOM05D001674 ORTHO05D008374 7.0e-27 125.2 162 40.1
Pp3c1_13308 Physcomitrium patens HOM05D001674 ORTHO05D008374 7.0e-27 125.2 162 40.1
Solyc03g115530.4 Solanum lycopersicum HOM05D001674 ORTHO05D008374 9.5e-24 114.8 116 58.6
SMO358G0589 Selaginella moellendorffii HOM05D001674 ORTHO05D008374 9.8e-21 104.8 105 49.5
AagrBONN_evm.TU.Sc2ySwM_117.3709 Anthoceros agrestis HOM05D001674 ORTHO05D008374 1.8e-19 100.5 269 30.5
COL.COLO4_36884 Corchorus olitorius HOM05D001674 ORTHO05D008374 1.6e-18 97.4 130 46.9
MCO15G340 Micromonas commoda HOM05D001674 ORTHO05D008374 1.3e-12 77.8 111 40.5
TAR629G3362 Trochodendron aralioides HOM05D001674 ORTHO05D008374 1.1e-11 74.7 86 58.1
Actinidia18515 Actinidia chinensis HOM05D001674 ORTHO05D005257 5.0e-09 65.9 180 31.7
Gohir.A06G112800 Gossypium hirsutum HOM05D001674 ORTHO05D005257 6.6e-09 65.5 47 61.7
Gorai.010G135100 Gossypium raimondii HOM05D001674 ORTHO05D005257 6.6e-09 65.5 47 61.7
PRCOL_00003770 Prasinoderma coloniale HOM05D001674 ORTHO05D008374 8.6e-09 65.1 51 56.9
AUR62002539 Chenopodium quinoa HOM05D001674 ORTHO05D005257 1.9e-08 63.9 41 73.2
MCO12G185 Micromonas commoda HOM05D000104 ORTHO05D005257 4.3e-08 62.8 52 50.0
CBR_g29672 Chara braunii HOM05D001674 ORTHO05D005257 5.6e-08 62.4 40 67.5
AUR62023654 Chenopodium quinoa HOM05D001674 ORTHO05D005257 7.3e-08 62.0 40 72.5
MELO3C006754.2 Cucumis melo HOM05D001674 ORTHO05D005257 7.3e-08 62.0 41 70.7
CsaV3_3G015550 Cucumis sativus L. HOM05D001674 ORTHO05D005257 7.3e-08 62.0 41 70.7
HanXRQChr05g0148951 Helianthus annuus HOM05D001674 ORTHO05D005257 7.3e-08 62.0 41 65.9
ClCG05G006880 Citrullus lanatus HOM05D001674 ORTHO05D005257 9.5e-08 61.6 41 70.7
Zm00001eb328680 Zea mays HOM05D001674 ORTHO05D005257 9.5e-08 61.6 44 68.2
Gohir.D06G117500 Gossypium hirsutum HOM05D001674 ORTHO05D005257 1.2e-07 61.2 40 67.5
Lj4g0019577 Lotus japonicus HOM05D001674 ORTHO05D005257 1.2e-07 61.2 41 68.3
CSS0042912 Camellia sinensis var. sinensis HOM05D001674 ORTHO05D005257 1.6e-07 60.8 41 65.9
Glyma.13G118200 Glycine max HOM05D001674 ORTHO05D005257 1.6e-07 60.8 41 68.3
Glyma.17G041700 Glycine max HOM05D001674 ORTHO05D005257 1.6e-07 60.8 41 68.3
Nitab4.5_0012375g0010 Nicotiana tabacum HOM05D001674 ORTHO05D005257 1.6e-07 60.8 40 65.0
Os07g0636200 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D005257 1.6e-07 60.8 45 62.2
Phvul.003G123100 Phaseolus vulgaris HOM05D001674 ORTHO05D005257 1.6e-07 60.8 41 68.3
Pp3c16_16990 Physcomitrium patens HOM05D001674 ORTHO05D005257 1.6e-07 60.8 45 64.4
Sc25g0001840 Simmondsia chinensis HOM05D001674 ORTHO05D005257 1.6e-07 60.8 41 65.9
VMungo1215G3338 Vigna mungo HOM05D001674 ORTHO05D005257 1.6e-07 60.8 41 68.3
CANSAT78G0587 Cannabis sativa HOM05D001674 ORTHO05D005257 2.1e-07 60.5 41 65.9
Carub.0001s3744 Capsella rubella HOM05D001674 ORTHO05D005257 2.1e-07 60.5 44 65.9
MD16G1134000 Malus domestica HOM05D001674 ORTHO05D005257 2.1e-07 60.5 41 65.9
Manes.03G212800 Manihot esculenta HOM05D001674 ORTHO05D005257 2.1e-07 60.5 41 65.9
Mapoly0113s0030 Marchantia polymorpha HOM05D000104 ORTHO05D005257 2.1e-07 60.5 44 65.9
Nitab4.5_0000978g0050 Nicotiana tabacum HOM05D001674 ORTHO05D005257 2.1e-07 60.5 40 65.0
Prupe.1G103200 Prunus persica HOM05D001674 ORTHO05D005257 2.1e-07 60.5 41 65.9
SEGI_26199 Sequoiadendron giganteum HOM05D001674 ORTHO05D005257 2.1e-07 60.5 44 61.4
AL1G54910 Arabidopsis lyrata HOM05D001674 ORTHO05D005257 2.8e-07 60.1 44 65.9
AT1G48310 Arabidopsis thaliana HOM05D001674 ORTHO05D005257 2.8e-07 60.1 44 65.9
MSTRG.22009 Avicennia marina HOM05D001674 ORTHO05D005257 2.8e-07 60.1 41 65.9
EL10Ac3g06234 Beta vulgaris HOM05D001674 ORTHO05D005257 2.8e-07 60.1 41 65.9
CiPaw.01G127900 Carya illinoinensis HOM05D001674 ORTHO05D005257 2.8e-07 60.1 45 60.0
Lsat_1_v5_gn_6_118341 Lactuca sativa HOM05D001674 ORTHO05D005257 2.8e-07 60.1 40 65.0
PSO170G0915 Papaver somniferum HOM05D001674 ORTHO05D005257 2.8e-07 60.1 45 57.8
PSO445G0012 Papaver somniferum HOM05D001674 ORTHO05D005257 2.8e-07 60.1 45 57.8
Solyc12g098860.2 Solanum lycopersicum HOM05D001674 ORTHO05D005257 2.8e-07 60.1 40 65.0
Sopen12g033610 Solanum pennellii HOM05D001674 ORTHO05D005257 2.8e-07 60.1 40 65.0
unitig_8.g3632 Utricularia gibba HOM05D001674 ORTHO05D005257 2.8e-07 60.1 41 65.9
CAN.G484.96 Capsicum annuum HOM05D001674 ORTHO05D005257 3.6e-07 59.7 40 65.0
Dinv24721 Davidia involucrata HOM05D001674 ORTHO05D005257 3.6e-07 59.7 41 63.4
Aqoxy2G02487 Aquilegia oxysepala HOM05D001674 ORTHO05D005257 4.7e-07 59.3 45 60.0
Cc03_g00030 Coffea canephora HOM05D001674 ORTHO05D005257 4.7e-07 59.3 40 65.0
Duzib235G1161 Durio zibethinus HOM05D001674 ORTHO05D005257 4.7e-07 59.3 47 55.3
Lalb_Chr13g0299021 Lupinus albus HOM05D001674 ORTHO05D005257 4.7e-07 59.3 41 65.9
Potri.010G003300 Populus trichocarpa HOM05D001674 ORTHO05D005257 4.7e-07 59.3 41 61.0
Sed0007966 Sechium edule HOM05D001674 ORTHO05D005257 4.7e-07 59.3 41 65.9
Thecc.05G189900 Theobroma cacao HOM05D001674 ORTHO05D005257 4.7e-07 59.3 41 63.4
ATR0796G053 Amborella trichopoda HOM05D001674 ORTHO05D005257 6.2e-07 58.9 45 55.6
Ciclev10004488m.g Citrus clementina HOM05D001674 ORTHO05D005257 6.2e-07 58.9 49 57.1
Medtr4g124090 Medicago truncatula HOM05D001674 ORTHO05D005257 6.2e-07 58.9 41 65.9
QL06p014511 Quercus lobata HOM05D001674 ORTHO05D005257 6.2e-07 58.9 41 63.4
THA.LOC104802617 Tarenaya hassleriana HOM05D001674 ORTHO05D005257 6.2e-07 58.9 45 62.2
GSVIVG01017700001 Vitis vinifera HOM05D001674 ORTHO05D005257 6.2e-07 58.9 41 65.9
ECA246G1105 Erigeron canadensis HOM05D001674 ORTHO05D005257 8.0e-07 58.5 41 65.9
Lj3C842G5 Lonicera japonica HOM05D001674 ORTHO05D005257 8.0e-07 58.5 40 65.0
Peaxi162Scf00323g00935 Petunia axillaris HOM05D001674 ORTHO05D005257 8.0e-07 58.5 40 62.5
Sabra10G0002600 Salix brachista HOM05D001674 ORTHO05D005257 8.0e-07 58.5 41 58.5
BcaB02g11412 Brassica carinata HOM05D001674 ORTHO05D005257 1.1e-06 58.2 44 63.6
BcaC05g27587 Brassica carinata HOM05D001674 ORTHO05D005257 1.1e-06 58.2 44 63.6
A05p21130 Brassica napus HOM05D001674 ORTHO05D005257 1.1e-06 58.2 44 63.6
C05p35670 Brassica napus HOM05D001674 ORTHO05D005257 1.1e-06 58.2 44 63.6
BolC5t32283H Brassica oleracea HOM05D001674 ORTHO05D005257 1.1e-06 58.2 44 63.6
BraA05t21018Z Brassica rapa HOM05D001674 ORTHO05D005257 1.1e-06 58.2 44 63.6
Cfa015741 Carpinus fangiana HOM05D001674 ORTHO05D005257 1.1e-06 58.2 41 63.4
Thhalv10011287m.g Eutrema salsugineum HOM05D001674 ORTHO05D005257 1.1e-06 58.2 44 63.6
Sp1g35260 Schrenkiella parvula HOM05D001674 ORTHO05D005257 1.1e-06 58.2 44 63.6
Cre03.g199350 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D005257 1.4e-06 57.8 56 51.8
Migut.N03098 Erythranthe guttata HOM05D001674 ORTHO05D005257 1.4e-06 57.8 41 61.0
Rhsim04G0249200 Rhododendron simsii HOM05D001674 ORTHO05D005257 1.4e-06 57.8 40 65.0
vmacro08016 Vaccinium macrocarpon HOM05D001674 ORTHO05D005257 1.4e-06 57.8 40 65.0
MD13G1138200 Malus domestica HOM05D000021 ORTHO05D005257 1.8e-06 57.4 41 63.4
MBI19_g30290_MAGBIO Magnolia biondii HOM05D001674 ORTHO05D005257 2.3e-06 57.0 45 57.8
TAR362G1045 Trochodendron aralioides HOM05D001674 ORTHO05D005257 2.3e-06 57.0 45 57.8
FvH4_4g21690 Fragaria vesca HOM05D001674 ORTHO05D005257 3.1e-06 56.6 41 61.0
RcHm_v2.0_Chr4g0427901 Rosa chinensis HOM05D001674 ORTHO05D005257 3.1e-06 56.6 47 55.3
PRCOL_00002706 Prasinoderma coloniale HOM05D000104 ORTHO05D005257 4.0e-06 56.2 46 56.5
SMO364G0824 Selaginella moellendorffii HOM05D001674 ORTHO05D005257 4.0e-06 56.2 42 57.1
SalBow6G2708 Salvia bowleyana HOM05D001674 ORTHO05D005257 5.2e-06 55.8 41 65.9
Ca_21367_v3 Cicer arietinum L. HOM05D001674 ORTHO05D005257 6.8e-06 55.5 41 63.4
Psat0s1206g0200 Pisum sativum HOM05D001674 ORTHO05D005257 6.8e-06 55.5 41 63.4
Eucgr.H04132 Eucalyptus grandis HOM05D001674 ORTHO05D005257 8.9e-06 55.1 40 65.0
TPR.G12547 Trifolium pratense HOM05D001674 ORTHO05D005257 8.9e-06 55.1 41 63.4


User provided reference genes

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