Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043223 Camellia sinensis var. sinensis HOM05D005460 ORTHO05D008059 1.0e-268 929.5 456 100.0
CSS0025897 Camellia sinensis var. sinensis HOM05D005460 ORTHO05D008059 1.0e-252 876.3 454 95.2
Actinidia04798 Actinidia chinensis HOM05D005460 ORTHO05D008059 2.9e-231 805.1 454 86.6
Dinv07972 Davidia involucrata HOM05D005460 ORTHO05D008059 1.7e-223 779.2 449 84.0
Rhsim08G0141800 Rhododendron simsii HOM05D005460 ORTHO05D008059 4.6e-213 744.6 454 80.6
TAR629G3051 Trochodendron aralioides HOM05D005460 ORTHO05D008059 1.1e-211 740.0 449 77.7
GSVIVG01008151001 Vitis vinifera HOM05D005460 ORTHO05D008059 1.8e-209 732.6 455 77.4
Hma1.2p1_2037F.1_g311990 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 2.3e-209 732.3 442 79.4
HanXRQChr09g0270461 Helianthus annuus HOM05D005460 ORTHO05D008059 6.8e-209 730.7 451 76.1
ECA232G2972 Erigeron canadensis HOM05D005460 ORTHO05D008059 1.3e-207 726.5 449 77.3
Cc04_g08300 Coffea canephora HOM05D005460 ORTHO05D008059 1.0e-204 716.8 452 76.1
QL10p020708 Quercus lobata HOM05D005460 ORTHO05D008059 9.6e-203 710.3 449 75.5
CiPaw.15G113700 Carya illinoinensis HOM05D005460 ORTHO05D008059 6.2e-202 707.6 450 74.4
Oeu005512.2 Olea europaea HOM05D005460 ORTHO05D008059 1.4e-201 706.4 472 73.1
Thecc.03G107700 Theobroma cacao HOM05D005460 ORTHO05D008059 4.4e-200 701.4 450 75.1
Sc04g0003880 Simmondsia chinensis HOM05D005460 ORTHO05D008059 9.9e-200 700.3 453 74.2
Cfa017734 Carpinus fangiana HOM05D005460 ORTHO05D008059 1.7e-199 699.5 448 73.9
Ciclev10018555m.g Citrus clementina HOM05D005460 ORTHO05D008059 8.4e-199 697.2 452 72.8
MBI16_g07042_MAGBIO Magnolia biondii HOM05D005460 ORTHO05D008059 8.4e-199 697.2 449 74.6
COL.COLO4_27492 Corchorus olitorius HOM05D005460 ORTHO05D008059 1.1e-198 696.8 450 74.0
MELO3C017248.2 Cucumis melo HOM05D005460 ORTHO05D008059 1.9e-198 696.0 448 73.4
Sopen03g033860 Solanum pennellii HOM05D005460 ORTHO05D008059 2.4e-198 695.7 453 73.3
Migut.I00363 Erythranthe guttata HOM05D005460 ORTHO05D008059 5.4e-198 694.5 451 72.9
DCAR_011574 Daucus carota HOM05D005460 ORTHO05D008059 1.6e-197 693.0 447 72.9
Solyc03g114780.3 Solanum lycopersicum HOM05D005460 ORTHO05D008059 2.1e-197 692.6 453 72.8
MSTRG.22948 Avicennia marina HOM05D005460 ORTHO05D008059 2.7e-197 692.2 447 72.5
Manes.06G081200 Manihot esculenta HOM05D005460 ORTHO05D008059 3.5e-197 691.8 452 73.2
Nn3g17530 Nelumbo nucifera HOM05D005460 ORTHO05D008059 3.5e-197 691.8 445 74.6
Hund09954 Selenicereus undatus HOM05D005460 ORTHO05D008059 3.5e-197 691.8 439 73.6
CsaV3_1G003350 Cucumis sativus L. HOM05D005460 ORTHO05D008059 4.6e-197 691.4 448 72.8
Nitab4.5_0005994g0060 Nicotiana tabacum HOM05D005460 ORTHO05D008059 7.8e-197 690.6 453 72.8
Sed0020336 Sechium edule HOM05D005460 ORTHO05D008059 7.8e-197 690.6 448 71.9
PGSC0003DMG400024525 Solanum tuberosum HOM05D005460 ORTHO05D008059 2.3e-196 689.1 453 73.1
Lsat_1_v5_gn_4_113721 Lactuca sativa HOM05D005460 ORTHO05D008059 5.1e-196 688.0 452 72.8
Peaxi162Scf00017g03272 Petunia axillaris HOM05D005460 ORTHO05D008059 3.3e-195 685.3 449 72.8
SGA_v2.0_scaffold25G10948 Striga asiatica HOM05D005460 ORTHO05D008059 1.8e-193 679.5 456 71.7
TWI60G0358 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 3.4e-192 675.2 449 71.7
TWI60G1488 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 3.4e-192 675.2 449 71.7
PSO478G1652 Papaver somniferum HOM05D005460 ORTHO05D008059 1.7e-191 672.9 451 71.4
AUR62032136 Chenopodium quinoa HOM05D005460 ORTHO05D008059 3.2e-190 668.7 449 70.4
AUR62039669 Chenopodium quinoa HOM05D005460 ORTHO05D008059 5.1e-188 661.4 439 71.3
ClCG06G015450 Citrullus lanatus HOM05D005460 ORTHO05D008059 1.1e-187 660.2 439 71.8
Glyma.06G206000 Glycine max HOM05D005460 ORTHO05D008059 1.6e-186 656.4 444 70.9
EL10Ac5g11188 Beta vulgaris HOM05D005460 ORTHO05D008059 2.1e-186 656.0 439 70.4
arahy.Tifrunner.gnm1.ann1.N0CKJ9 Arachis hypogaea HOM05D005460 ORTHO05D008059 6.9e-185 651.0 445 69.7
Lj1g0006842 Lotus japonicus HOM05D005460 ORTHO05D008059 9.0e-185 650.6 445 69.2
arahy.Tifrunner.gnm1.ann1.LBS82T Arachis hypogaea HOM05D005460 ORTHO05D008059 7.6e-184 647.5 445 69.7
THA.LOC104818356 Tarenaya hassleriana HOM05D005460 ORTHO05D008059 2.2e-183 646.0 452 67.7
TPR.G14357 Trifolium pratense HOM05D005460 ORTHO05D008059 7.1e-182 641.0 445 69.0
Gorai.007G040200 Gossypium raimondii HOM05D005460 ORTHO05D008059 1.2e-181 640.2 413 73.6
CANSAT80G0202 Cannabis sativa HOM05D005460 ORTHO05D008059 1.6e-181 639.8 446 68.6
Aa31LG3G18430 Aethionema arabicum HOM05D005460 ORTHO05D008059 2.1e-181 639.4 439 67.9
RcHm_v2.0_Chr7g0183711 Rosa chinensis HOM05D005460 ORTHO05D008059 1.8e-180 636.3 449 68.4
VMungo1309G0936 Vigna mungo HOM05D005460 ORTHO05D008059 1.8e-180 636.3 444 68.5
Psat1g126760 Pisum sativum HOM05D005460 ORTHO05D008059 1.1e-179 633.6 445 69.0
Eucgr.K02548 Eucalyptus grandis HOM05D005460 ORTHO05D008059 3.3e-179 632.1 455 67.9
Medtr2g461560 Medicago truncatula HOM05D005460 ORTHO05D008059 7.4e-179 630.9 445 68.8
FvH4_5g13410 Fragaria vesca HOM05D005460 ORTHO05D008059 1.3e-178 630.2 451 68.7
Phvul.009G203700 Phaseolus vulgaris HOM05D005460 ORTHO05D008059 3.7e-178 628.6 444 67.6
Duzib068G0250 Durio zibethinus HOM05D005460 ORTHO05D008059 4.8e-178 628.2 456 67.8
Lj9A438G54 Lonicera japonica HOM05D005460 ORTHO05D008059 1.1e-177 627.1 458 70.1
Gohir.D11G037400 Gossypium hirsutum HOM05D005460 ORTHO05D008059 4.0e-177 625.2 452 67.0
Sp6g34850 Schrenkiella parvula HOM05D005460 ORTHO05D008059 4.0e-177 625.2 451 65.2
Gohir.A11G034000 Gossypium hirsutum HOM05D005460 ORTHO05D008059 2.0e-176 622.9 452 66.8
FAN08G0483 Fragaria x ananassa HOM05D005460 ORTHO05D008059 1.3e-175 620.2 451 67.4
FAN18G2313 Fragaria x ananassa HOM05D005460 ORTHO05D008059 7.1e-174 614.4 470 65.3
Prupe.5G209800 Prunus persica HOM05D005460 ORTHO05D008059 9.3e-174 614.0 446 67.0
HPP92_007735 Vanilla planifolia HOM05D005460 ORTHO05D008059 2.1e-173 612.8 447 66.2
Thhalv10012480m.g Eutrema salsugineum HOM05D005460 ORTHO05D008059 1.0e-172 610.5 439 66.5
CARHR205080 Cardamine hirsuta HOM05D005460 ORTHO05D008059 1.3e-172 610.1 453 63.6
Aqoxy3G00547_Aqoxy3G00548 Aquilegia oxysepala HOM05D005460 ORTHO05D008059 2.5e-171 605.9 454 65.9
Carub.0006s0699 Capsella rubella HOM05D005460 ORTHO05D008059 2.5e-171 605.9 451 63.6
vmacro17637 Vaccinium macrocarpon HOM05D005460 ORTHO05D008059 1.3e-170 603.6 845 44.3
Haze_18509 Corylus avellana HOM05D005460 ORTHO05D008059 2.4e-169 599.4 499 61.1
BolC9t59631H Brassica oleracea HOM05D005460 ORTHO05D008059 6.9e-169 597.8 451 63.0
C09p68840 Brassica napus HOM05D005460 ORTHO05D008059 9.0e-169 597.4 451 63.0
BcaB08g37287 Brassica carinata HOM05D005460 ORTHO05D008059 6.5e-167 591.3 452 63.7
Lalb_Chr11g0071861 Lupinus albus HOM05D005460 ORTHO05D008059 2.5e-166 589.3 410 68.3
AL6G18480 Arabidopsis lyrata HOM05D005460 ORTHO05D008059 1.8e-164 583.2 447 62.9
Zm00001eb327130 Zea mays HOM05D005460 ORTHO05D008059 3.9e-164 582.0 451 61.4
Potri.012G063500 Populus trichocarpa HOM05D005460 ORTHO05D008059 4.3e-163 578.6 451 64.7
A10p28560 Brassica napus HOM05D005460 ORTHO05D008059 1.3e-162 577.0 439 63.1
BraA10t44905Z Brassica rapa HOM05D005460 ORTHO05D008059 1.3e-162 577.0 442 62.7
AT5G08110 Arabidopsis thaliana HOM05D005460 ORTHO05D008059 2.8e-162 575.9 447 61.3
MD14G1216300 Malus domestica HOM05D005460 ORTHO05D008059 8.2e-162 574.3 446 63.0
Cpa.g.sc3.237 Carica papaya HOM05D005460 ORTHO05D008059 1.5e-160 570.1 448 64.5
Pp3c5_22230 Physcomitrium patens HOM05D005460 ORTHO05D008059 3.4e-160 568.9 450 59.8
AagrBONN_evm.TU.Sc2ySwM_344.3544 Anthoceros agrestis HOM05D005460 ORTHO05D008059 1.1e-155 553.9 448 58.5
vmacro23112 Vaccinium macrocarpon HOM05D005460 ORTHO05D008059 2.5e-150 536.2 847 41.6
SEGI_08899 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 3.2e-150 535.8 386 65.0
PGR031G2062 Punica granatum HOM05D005460 ORTHO05D008059 5.5e-150 535.0 449 61.2
SMO203G0199 Selaginella moellendorffii HOM05D005460 ORTHO05D008059 3.7e-146 522.3 451 54.8
Os02g0111900 Oryza sativa ssp. japonica HOM05D005460 ORTHO05D008059 1.7e-143 513.5 453 55.0
CBR_g50975 Chara braunii HOM05D005460 ORTHO05D008059 1.5e-142 510.4 453 54.5
SHI17428 Sapria himalayana HOM05D005460 ORTHO05D008059 7.5e-139 498.0 451 57.0
Prupe.5G209300 Prunus persica HOM05D005460 ORTHO05D008059 7.2e-134 481.5 480 52.9
ATR0827G052 Amborella trichopoda HOM05D005460 ORTHO05D008059 1.9e-126 456.8 307 69.4
Nitab4.5_0002467g0140 Nicotiana tabacum HOM05D005460 ORTHO05D008059 4.2e-126 455.7 297 73.1
Hma1.2p1_3034F.1_g331890 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 1.8e-116 423.7 249 81.5
Ca_02784_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 5.8e-99 365.5 260 69.2
MCO09G659 Micromonas commoda HOM05D005460 ORTHO05D008059 3.2e-97 359.8 503 38.6
FAN13G2142 Fragaria x ananassa HOM05D005460 ORTHO05D008059 1.0e-79 301.6 445 41.8
Cre03.g187700 Chlamydomonas reinhardtii HOM05D005460 ORTHO05D008059 8.7e-79 298.5 646 30.0
PRCOL_00000536 Prasinoderma coloniale HOM05D005460 ORTHO05D008059 1.1e-70 271.6 507 33.5
Potri.012G063201 Populus trichocarpa HOM05D005460 ORTHO05D008059 9.3e-57 225.3 161 68.3
AagrBONN_evm.TU.Sc2ySwM_344.4214 Anthoceros agrestis HOM05D005460 ORTHO05D008059 2.9e-50 203.8 448 28.8
Pp3c7_15450 Physcomitrium patens HOM05D005460 ORTHO05D008059 3.3e-46 190.3 451 31.0
Pp3c7_15456 Physcomitrium patens HOM05D005460 ORTHO05D008059 3.3e-46 190.3 451 31.0
Pp3s405_10 Physcomitrium patens HOM05D005460 ORTHO05D008059 2.0e-43 181.0 423 28.8
MCO07G109 Micromonas commoda HOM05D005460 ORTHO05D008059 4.2e-33 146.7 420 27.1
Cfa022214 Carpinus fangiana HOM05D005460 ORTHO05D124255 8.8e-31 139.0 297 29.3
Ca_02785_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 3.7e-29 133.7 94 67.0
Psat0s3496g0160 Pisum sativum HOM05D001876 ORTHO05D002002 3.3e-22 110.5 98 57.1
Actinidia10444 Actinidia chinensis HOM05D005460 ORTHO05D056868 1.8e-15 88.2 85 54.1
SEGI_23280 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 2.8e-13 80.9 72 56.9
Lsat_1_v5_gn_1_69000 Lactuca sativa HOM05D005460 ORTHO05D048358 7.0e-12 76.3 46 78.3


User provided reference genes

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