Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042655 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D024300 1.4e-20 102.1 54 100.0
CSS0010587 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 1.6e-16 88.6 63 77.8
CSS0027330 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 1.6e-16 88.6 63 77.8
Cfa020002 Carpinus fangiana HOM05D003944 ORTHO05D005521 6.1e-16 86.7 63 74.6
Haze_20232 Corylus avellana HOM05D003944 ORTHO05D005521 6.1e-16 86.7 63 74.6
CSS0028458 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 8.0e-16 86.3 63 76.2
Actinidia01829 Actinidia chinensis HOM05D003944 ORTHO05D005521 1.8e-15 85.1 63 74.6
vmacro07788 Vaccinium macrocarpon HOM05D003944 ORTHO05D005521 3.0e-15 84.3 63 73.0
CiPaw.09G048200 Carya illinoinensis HOM05D003944 ORTHO05D005521 5.2e-15 83.6 63 71.4
QL07p011017 Quercus lobata HOM05D003944 ORTHO05D005521 1.2e-14 82.4 62 71.0
CSS0025536 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 1.5e-14 82.0 63 71.4
TWI77G0996 Tripterygium wilfordii HOM05D003944 ORTHO05D005521 1.5e-14 82.0 63 71.4
Aqoxy2G00418 Aquilegia oxysepala HOM05D003944 ORTHO05D005521 2.0e-14 81.6 63 68.3
Glyma.19G130000 Glycine max HOM05D003944 ORTHO05D005521 2.0e-14 81.6 63 69.8
Rhsim03G0038900 Rhododendron simsii HOM05D003944 ORTHO05D005521 2.0e-14 81.6 63 69.8
Cc06_g19400 Coffea canephora HOM05D003944 ORTHO05D005521 2.6e-14 81.3 63 69.8
Lj1C1090G8 Lonicera japonica HOM05D003944 ORTHO05D005521 2.6e-14 81.3 63 69.8
Nn7g36800 Nelumbo nucifera HOM05D003944 ORTHO05D005521 5.7e-14 80.1 63 68.3
Solyc12g021230.2 Solanum lycopersicum HOM05D003944 ORTHO05D005521 5.7e-14 80.1 63 69.8
Sopen12g011160 Solanum pennellii HOM05D003944 ORTHO05D005521 5.7e-14 80.1 63 69.8
Zm00001eb128720 Zea mays HOM05D003944 ORTHO05D005521 5.7e-14 80.1 63 68.3
Manes.09G004300 Manihot esculenta HOM05D003944 ORTHO05D005521 7.5e-14 79.7 63 65.1
COL.COLO4_21471 Corchorus olitorius HOM05D003944 ORTHO05D005521 9.8e-14 79.3 63 66.7
Duzib128G0786 Durio zibethinus HOM05D003944 ORTHO05D005521 9.8e-14 79.3 63 66.7
Phvul.001G123100 Phaseolus vulgaris HOM05D003944 ORTHO05D005521 9.8e-14 79.3 63 69.8
TPR.G34631 Trifolium pratense HOM05D003944 ORTHO05D005521 9.8e-14 79.3 63 65.1
Eucgr.A02236 Eucalyptus grandis HOM05D003944 ORTHO05D005521 1.3e-13 79.0 63 65.1
Nitab4.5_0005254g0010 Nicotiana tabacum HOM05D003944 ORTHO05D005521 1.3e-13 79.0 63 68.3
TAR636G2487 Trochodendron aralioides HOM05D003944 ORTHO05D005521 1.3e-13 79.0 63 68.3
VMungo1383G0013 Vigna mungo HOM05D003944 ORTHO05D005521 1.3e-13 79.0 63 69.8
Gohir.D03G073100 Gossypium hirsutum HOM05D003944 ORTHO05D005521 1.7e-13 78.6 63 68.3
Gorai.003G086700 Gossypium raimondii HOM05D003944 ORTHO05D005521 1.7e-13 78.6 63 68.3
Lj1g0011822 Lotus japonicus HOM05D003944 ORTHO05D005521 1.7e-13 78.6 63 65.1
Medtr7g089790 Medicago truncatula HOM05D003944 ORTHO05D005521 1.7e-13 78.6 63 65.1
CAN.G8.29 Capsicum annuum HOM05D003944 ORTHO05D005521 2.2e-13 78.2 63 68.3
PGR031G2678 Punica granatum HOM05D003944 ORTHO05D005521 2.2e-13 78.2 63 66.7
ATR0759G018 Amborella trichopoda HOM05D003944 ORTHO05D005521 2.8e-13 77.8 63 65.1
Glyma.03G127300 Glycine max HOM05D003944 ORTHO05D005521 2.8e-13 77.8 63 66.7
Peaxi162Scf00076g00421 Petunia axillaris HOM05D003944 ORTHO05D005521 2.8e-13 77.8 63 66.7
Psat3g079040 Pisum sativum HOM05D003944 ORTHO05D005521 2.8e-13 77.8 63 63.5
Prupe.7G033800 Prunus persica HOM05D003944 ORTHO05D005521 2.8e-13 77.8 63 65.1
GSVIVG01033639001 Vitis vinifera HOM05D003944 ORTHO05D005521 2.8e-13 77.8 63 66.7
Cpa.g.sc5.163 Carica papaya HOM05D003944 ORTHO05D005521 3.7e-13 77.4 63 66.7
Thecc.05G129200 Theobroma cacao HOM05D003944 ORTHO05D005521 3.7e-13 77.4 63 65.1
Dinv06192 Davidia involucrata HOM05D003944 ORTHO05D024300 4.9e-13 77.0 63 68.3
Potri.016G036200 Populus trichocarpa HOM05D003944 ORTHO05D005521 4.9e-13 77.0 63 63.5
unitig_899.g15645 Utricularia gibba HOM05D003944 ORTHO05D005521 4.9e-13 77.0 63 68.3
arahy.Tifrunner.gnm1.ann1.20HJGU Arachis hypogaea HOM05D003944 ORTHO05D005521 6.3e-13 76.6 63 65.1
arahy.Tifrunner.gnm1.ann1.L41URX Arachis hypogaea HOM05D003944 ORTHO05D005521 6.3e-13 76.6 63 65.1
Dinv06172 Davidia involucrata HOM05D003944 ORTHO05D005521 6.3e-13 76.6 63 68.3
Lalb_Chr14g0365791 Lupinus albus HOM05D003944 ORTHO05D005521 6.3e-13 76.6 63 63.5
THA.LOC104826889 Tarenaya hassleriana HOM05D003944 ORTHO05D005521 6.3e-13 76.6 63 66.7
MSTRG.19800 Avicennia marina HOM05D003944 ORTHO05D005521 8.3e-13 76.3 63 66.7
Ciclev10004438m.g Citrus clementina HOM05D003944 ORTHO05D005521 8.3e-13 76.3 63 60.3
Os01g0268300 Oryza sativa ssp. japonica HOM05D003944 ORTHO05D005521 8.3e-13 76.3 63 63.5
Sabra16G0038300 Salix brachista HOM05D003944 ORTHO05D005521 8.3e-13 76.3 63 61.9
CANSAT64G1720 Cannabis sativa HOM05D003944 ORTHO05D005521 1.1e-12 75.9 63 63.5
Gohir.A02G105903 Gossypium hirsutum HOM05D003944 ORTHO05D005521 1.1e-12 75.9 63 65.1
Ca_08389_v3 Cicer arietinum L. HOM05D003944 ORTHO05D005521 1.4e-12 75.5 63 61.9
FvH4_6g25390 Fragaria vesca HOM05D003944 ORTHO05D005521 1.4e-12 75.5 63 65.1
FAN02G4022 Fragaria x ananassa HOM05D003944 ORTHO05D005521 1.4e-12 75.5 63 65.1
Potri.006G039400 Populus trichocarpa HOM05D003944 ORTHO05D005521 1.4e-12 75.5 63 63.5
Sabra16G0038600 Salix brachista HOM05D003944 ORTHO05D005521 1.4e-12 75.5 63 61.9
SalBow6G5823 Salvia bowleyana HOM05D003944 ORTHO05D005521 1.4e-12 75.5 63 65.1
THA.LOC104816412 Tarenaya hassleriana HOM05D003944 ORTHO05D005521 1.4e-12 75.5 63 65.1
DCAR_020575 Daucus carota HOM05D003944 ORTHO05D005521 1.8e-12 75.1 63 65.1
Oeu053358.4 Olea europaea HOM05D003944 ORTHO05D005521 1.8e-12 75.1 63 65.1
Atru.chr1.1433 Acer truncatum HOM05D003944 ORTHO05D005521 2.4e-12 74.7 63 63.5
MD12G1095800 Malus domestica HOM05D003944 ORTHO05D005521 2.4e-12 74.7 63 63.5
CDE02G1045 Ceratophyllum demersum HOM05D003944 ORTHO05D005521 3.2e-12 74.3 63 61.9
CDE04G2160 Ceratophyllum demersum HOM05D003944 ORTHO05D005521 3.2e-12 74.3 63 61.9
MELO3C019090.2 Cucumis melo HOM05D003944 ORTHO05D005521 3.2e-12 74.3 63 63.5
FAN05G2619 Fragaria x ananassa HOM05D003944 ORTHO05D005521 3.2e-12 74.3 63 63.5
RcHm_v2.0_Chr2g0125831 Rosa chinensis HOM05D003944 ORTHO05D005521 3.2e-12 74.3 63 63.5
Sed0017237 Sechium edule HOM05D003944 ORTHO05D005521 3.2e-12 74.3 63 63.5
ClCG04G005580 Citrullus lanatus HOM05D003944 ORTHO05D005521 4.1e-12 73.9 63 63.5
FAN09G4102 Fragaria x ananassa HOM05D003944 ORTHO05D005521 4.1e-12 73.9 63 63.5
CsaV3_4G029550 Cucumis sativus L. HOM05D003944 ORTHO05D005521 7.0e-12 73.2 63 63.5
Sabra06G0026500 Salix brachista HOM05D003944 ORTHO05D005521 1.2e-11 72.4 45 75.6
MD14G1090600 Malus domestica HOM05D003944 ORTHO05D005521 1.6e-11 72.0 63 61.9
COL.COLO4_37451 Corchorus olitorius HOM05D003944 ORTHO05D005521 2.0e-11 71.6 50 70.0
SGA_v2.0_scaffold69G23158 Striga asiatica HOM05D003944 ORTHO05D005521 2.0e-11 71.6 63 60.3
AUR62018352 Chenopodium quinoa HOM05D003944 ORTHO05D005521 2.7e-11 71.2 63 58.7
AUR62030314 Chenopodium quinoa HOM05D003944 ORTHO05D005521 2.7e-11 71.2 63 58.7
PSO339G2693 Papaver somniferum HOM05D003944 ORTHO05D005521 2.7e-11 71.2 63 60.3
PSO384G4619 Papaver somniferum HOM05D003944 ORTHO05D005521 2.7e-11 71.2 63 60.3
HPP92_006583 Vanilla planifolia HOM05D003944 ORTHO05D005521 2.7e-11 71.2 63 63.5
EL10Ac3g07244 Beta vulgaris HOM05D003944 ORTHO05D005521 4.5e-11 70.5 63 58.7
Migut.J01650 Erythranthe guttata HOM05D003944 ORTHO05D005521 1.3e-10 68.9 63 60.3
HanXRQChr01g0008211 Helianthus annuus HOM05D003944 ORTHO05D005521 1.7e-10 68.6 63 61.9
Aa31LG3G2850 Aethionema arabicum HOM05D003944 ORTHO05D005521 2.3e-10 68.2 63 55.6
Sp6g38620 Schrenkiella parvula HOM05D003944 ORTHO05D005521 2.3e-10 68.2 63 58.7
C05p57880 Brassica napus HOM05D003944 ORTHO05D005521 2.9e-10 67.8 63 55.6
Nitab4.5_0004224g0040 Nicotiana tabacum HOM05D003944 ORTHO05D024300 2.9e-10 67.8 41 78.0
SGA_v2.0_scaffold3G01719 Striga asiatica HOM05D003944 ORTHO05D005521 2.9e-10 67.8 42 78.6
ECA248G1744 Erigeron canadensis HOM05D003944 ORTHO05D005521 3.9e-10 67.4 63 61.9
Thhalv10020150m.g Eutrema salsugineum HOM05D003944 ORTHO05D005521 3.9e-10 67.4 63 55.6
CARHR084750 Cardamine hirsuta HOM05D003944 ORTHO05D005521 5.0e-10 67.0 63 54.0
Sp3g08540 Schrenkiella parvula HOM05D003944 ORTHO05D005521 5.0e-10 67.0 63 55.6
AL3G21600 Arabidopsis lyrata HOM05D003944 ORTHO05D005521 6.6e-10 66.6 63 54.0
BcaNung05530 Brassica carinata HOM05D003944 ORTHO05D024300 8.6e-10 66.2 62 54.8
Carub.0003s0945 Capsella rubella HOM05D003944 ORTHO05D005521 8.6e-10 66.2 63 52.4
A05p38840 Brassica napus HOM05D003944 ORTHO05D005521 1.1e-09 65.9 63 54.0
BolC5t34443H Brassica oleracea HOM05D003944 ORTHO05D005521 1.1e-09 65.9 63 54.0
BraA05t22676Z Brassica rapa HOM05D003944 ORTHO05D024300 1.1e-09 65.9 63 54.0
Carub.0006s0308 Capsella rubella HOM05D003944 ORTHO05D005521 1.1e-09 65.9 63 57.1
AT3G10270 Arabidopsis thaliana HOM05D003944 ORTHO05D005521 1.5e-09 65.5 63 52.4
AL6G13750 Arabidopsis lyrata HOM05D003944 ORTHO05D005521 2.5e-09 64.7 63 55.6
AT5G04130 Arabidopsis thaliana HOM05D003944 ORTHO05D005521 2.5e-09 64.7 63 55.6
Lsat_1_v5_gn_5_157080 Lactuca sativa HOM05D003944 ORTHO05D005521 2.5e-09 64.7 43 69.8
BcaB01g05767 Brassica carinata HOM05D003944 ORTHO05D005521 3.3e-09 64.3 63 55.6
BcaB05g21771 Brassica carinata HOM05D003944 ORTHO05D005521 3.3e-09 64.3 63 55.6
BraA02t04801Z Brassica rapa HOM05D003944 ORTHO05D005521 3.3e-09 64.3 63 55.6
SEGI_36072 Sequoiadendron giganteum HOM05D003944 ORTHO05D005521 3.3e-09 64.3 63 58.7
AagrBONN_evm.TU.Sc2ySwM_228.2859 Anthoceros agrestis HOM05D003944 ORTHO05D005521 9.5e-09 62.8 63 57.1
Thhalv10012781m.g Eutrema salsugineum HOM05D003944 ORTHO05D005521 9.5e-09 62.8 63 54.0
BcaC03g12954 Brassica carinata HOM05D003944 ORTHO05D005521 1.2e-08 62.4 63 54.0
C02p01820 Brassica napus HOM05D003944 ORTHO05D005521 1.2e-08 62.4 63 54.0
BolC2t06138H Brassica oleracea HOM05D003944 ORTHO05D005521 1.2e-08 62.4 63 54.0
BcaNung05531 Brassica carinata HOM05D003944 ORTHO05D005521 1.6e-08 62.0 40 70.0
Ah.04g150900 Amaranthus hybridus HOM05D003944 ORTHO05D005521 2.8e-08 61.2 40 70.0
Pp3c22_3710 Physcomitrium patens HOM05D003944 ORTHO05D005521 3.6e-08 60.8 63 50.8
Pp3c19_5200 Physcomitrium patens HOM05D003944 ORTHO05D005521 8.0e-08 59.7 63 50.8
SGA_v2.0_scaffold105G30285 Striga asiatica HOM05D003944 ORTHO05D005521 8.0e-08 59.7 37 78.4
A03p01540 Brassica napus HOM05D003944 ORTHO05D005521 1.0e-07 59.3 63 52.4
Mapoly0001s0398 Marchantia polymorpha HOM05D003944 ORTHO05D005521 2.3e-07 58.2 63 50.8
SMO356G0312 Selaginella moellendorffii HOM05D003944 ORTHO05D005521 5.2e-07 57.0 63 49.2
Hund19091 Selenicereus undatus HOM05D003944 ORTHO05D005521 1.5e-06 55.5 42 64.3
CBR_g48715 Chara braunii HOM05D003944 ORTHO05D005521 2.6e-06 54.7 63 47.6


User provided reference genes

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