Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042221 Camellia sinensis var. sinensis HOM05D002168 ORTHO05D033867 1.6e-85 319.3 158 100.0
CSS0037663 Camellia sinensis var. sinensis HOM05D002168 ORTHO05D033867 4.1e-84 314.7 158 98.7
CSS0008485 Camellia sinensis var. sinensis HOM05D002168 ORTHO05D033867 1.6e-80 302.8 158 95.6
Psat0s2078g0040 Pisum sativum HOM05D002168 ORTHO05D002277 4.0e-23 112.1 82 75.6
Medtr7g086640 Medicago truncatula HOM05D002168 ORTHO05D002277 6.8e-23 111.3 80 76.2
Eucgr.A02140 Eucalyptus grandis HOM05D002168 ORTHO05D002277 8.9e-23 110.9 82 74.4
arahy.Tifrunner.gnm1.ann1.B3FMDE Arachis hypogaea HOM05D002168 ORTHO05D002277 1.2e-22 110.5 80 76.2
arahy.Tifrunner.gnm1.ann1.V0KP8I Arachis hypogaea HOM05D002168 ORTHO05D002277 1.2e-22 110.5 80 76.2
Ca_08312_v3 Cicer arietinum L. HOM05D002168 ORTHO05D002277 1.2e-22 110.5 80 76.2
Glyma.19G116700 Glycine max HOM05D002168 ORTHO05D002277 1.5e-22 110.2 80 75.0
Phvul.001G105633 Phaseolus vulgaris HOM05D002168 ORTHO05D002277 1.5e-22 110.2 82 74.4
Lalb_Chr14g0364831 Lupinus albus HOM05D002168 ORTHO05D002277 2.0e-22 109.8 80 75.0
Atru.chr2.1516 Acer truncatum HOM05D002168 ORTHO05D002277 4.4e-22 108.6 68 82.4
Actinidia03921 Actinidia chinensis HOM05D002168 ORTHO05D002277 4.4e-22 108.6 80 75.0
EL10Ac3g06617 Beta vulgaris HOM05D002168 ORTHO05D002277 4.4e-22 108.6 80 72.5
VMungo1383G0989 Vigna mungo HOM05D002168 ORTHO05D002277 4.4e-22 108.6 80 75.0
Cpa.g.sc1931.1 Carica papaya HOM05D002168 ORTHO05D002277 7.5e-22 107.8 80 73.8
Dinv25043 Davidia involucrata HOM05D002168 ORTHO05D002277 7.5e-22 107.8 80 73.8
AUR62018085 Chenopodium quinoa HOM05D002168 ORTHO05D002277 9.8e-22 107.5 80 73.8
AUR62032008 Chenopodium quinoa HOM05D002168 ORTHO05D002277 9.8e-22 107.5 80 73.8
Dinv13788 Davidia involucrata HOM05D002168 ORTHO05D002277 9.8e-22 107.5 80 73.8
Duzib177G0738 Durio zibethinus HOM05D002168 ORTHO05D002277 9.8e-22 107.5 80 73.8
ECA238G2164 Erigeron canadensis HOM05D002168 ORTHO05D002277 9.8e-22 107.5 80 72.5
Manes.08G153100 Manihot esculenta HOM05D002168 ORTHO05D002277 9.8e-22 107.5 80 72.5
PGR042G1483 Punica granatum HOM05D002168 ORTHO05D002277 9.8e-22 107.5 80 72.5
CDE07G0416 Ceratophyllum demersum HOM05D002168 ORTHO05D002277 1.3e-21 107.1 87 67.8
Ciclev10019242m.g Citrus clementina HOM05D002168 ORTHO05D002277 1.3e-21 107.1 80 72.5
Glyma.16G036100 Glycine max HOM05D002168 ORTHO05D002277 1.3e-21 107.1 80 73.8
Lsat_1_v5_gn_2_103701 Lactuca sativa HOM05D002168 ORTHO05D002277 1.3e-21 107.1 80 72.5
SGA_v2.0_scaffold69G23217 Striga asiatica HOM05D002168 ORTHO05D002277 1.3e-21 107.1 80 72.5
TWI32G0897 Tripterygium wilfordii HOM05D002168 ORTHO05D002277 1.3e-21 107.1 80 73.8
Aqoxy1G00512 Aquilegia oxysepala HOM05D002168 ORTHO05D002277 1.7e-21 106.7 81 70.4
Cfa017714 Carpinus fangiana HOM05D002168 ORTHO05D002277 1.7e-21 106.7 80 72.5
Cc06_g21470 Coffea canephora HOM05D002168 ORTHO05D002277 1.7e-21 106.7 80 72.5
COL.COLO4_28638 Corchorus olitorius HOM05D002168 ORTHO05D002277 1.7e-21 106.7 80 73.8
Haze_20409 Corylus avellana HOM05D002168 ORTHO05D002277 1.7e-21 106.7 80 72.5
Migut.J01542 Erythranthe guttata HOM05D002168 ORTHO05D002277 1.7e-21 106.7 80 71.2
HanXRQChr07g0196271 Helianthus annuus HOM05D002168 ORTHO05D002277 1.7e-21 106.7 80 71.2
HanXRQChr14g0453641 Helianthus annuus HOM05D002168 ORTHO05D002277 1.7e-21 106.7 70 75.7
Lj1g0016812 Lotus japonicus HOM05D002168 ORTHO05D002277 1.7e-21 106.7 80 72.5
Potri.019G040100 Populus trichocarpa HOM05D002168 ORTHO05D002277 1.7e-21 106.7 80 73.8
Sabra19G0050400 Salix brachista HOM05D002168 ORTHO05D002277 1.7e-21 106.7 80 72.5
Gohir.A11G229100 Gossypium hirsutum HOM05D002168 ORTHO05D002277 2.2e-21 106.3 80 73.8
Gohir.D11G241200 Gossypium hirsutum HOM05D002168 ORTHO05D002277 2.2e-21 106.3 80 73.8
Gorai.007G255300 Gossypium raimondii HOM05D002168 ORTHO05D002277 2.2e-21 106.3 80 73.8
Oeu044206.2 Olea europaea HOM05D002168 ORTHO05D002277 2.2e-21 106.3 80 71.2
Potri.013G065700 Populus trichocarpa HOM05D002168 ORTHO05D002277 2.2e-21 106.3 80 72.5
Sc07g0007450 Simmondsia chinensis HOM05D002168 ORTHO05D002277 2.2e-21 106.3 80 72.5
vmacro07652 Vaccinium macrocarpon HOM05D002168 ORTHO05D002277 2.2e-21 106.3 80 72.5
Sed0008218 Sechium edule HOM05D002168 ORTHO05D002277 2.9e-21 105.9 80 73.8
TAR633G2049 Trochodendron aralioides HOM05D002168 ORTHO05D002277 3.7e-21 105.5 80 72.5
Aa31LG5G14220 Aethionema arabicum HOM05D002168 ORTHO05D002277 4.9e-21 105.1 80 71.2
ClCG10G015830 Citrullus lanatus HOM05D002168 ORTHO05D002277 6.4e-21 104.8 80 72.5
MELO3C009794.2 Cucumis melo HOM05D002168 ORTHO05D002277 6.4e-21 104.8 80 72.5
CsaV3_3G040620 Cucumis sativus L. HOM05D002168 ORTHO05D002277 6.4e-21 104.8 80 72.5
DCAR_016962 Daucus carota HOM05D002168 ORTHO05D002277 6.4e-21 104.8 80 72.5
FvH4_1g28580 Fragaria vesca HOM05D002168 ORTHO05D002277 6.4e-21 104.8 82 69.5
FAN19G2763 Fragaria x ananassa HOM05D002168 ORTHO05D002277 6.4e-21 104.8 82 69.5
FAN26G0197 Fragaria x ananassa HOM05D002168 ORTHO05D002277 6.4e-21 104.8 82 69.5
Prupe.7G014600 Prunus persica HOM05D002168 ORTHO05D002277 6.4e-21 104.8 82 68.3
RcHm_v2.0_Chr3g0496111 Rosa chinensis HOM05D002168 ORTHO05D002277 6.4e-21 104.8 82 69.5
GSVIVG01029958001 Vitis vinifera HOM05D002168 ORTHO05D002277 6.4e-21 104.8 80 72.5
QL07p017571 Quercus lobata HOM05D002168 ORTHO05D002277 8.3e-21 104.4 80 71.2
Rhsim03G0049500 Rhododendron simsii HOM05D002168 ORTHO05D002277 8.3e-21 104.4 80 71.2
MD14G1008000 Malus domestica HOM05D002168 ORTHO05D002277 1.1e-20 104.0 82 67.1
PSO339G1487 Papaver somniferum HOM05D002168 ORTHO05D002277 1.1e-20 104.0 80 72.5
PSO384G3331 Papaver somniferum HOM05D002168 ORTHO05D002277 1.1e-20 104.0 80 72.5
Sabra13G0057400 Salix brachista HOM05D002168 ORTHO05D002277 1.1e-20 104.0 80 70.0
C05p63240 Brassica napus HOM05D002168 ORTHO05D002277 1.4e-20 103.6 80 70.0
FAN28G1730 Fragaria x ananassa HOM05D002168 ORTHO05D002277 1.4e-20 103.6 82 68.3
MBI11_g10545_MAGBIO Magnolia biondii HOM05D002168 ORTHO05D002277 1.4e-20 103.6 80 72.5
MD12G1011400 Malus domestica HOM05D002168 ORTHO05D002277 1.4e-20 103.6 82 67.1
Nn2g14555 Nelumbo nucifera HOM05D002168 ORTHO05D002277 1.4e-20 103.6 80 72.5
CAN.G9.1 Capsicum annuum HOM05D002168 ORTHO05D002277 1.9e-20 103.2 80 72.5
HanXRQChr15g0496011 Helianthus annuus HOM05D002168 ORTHO05D002277 1.9e-20 103.2 80 71.2
Peaxi162Scf01421g00012 Petunia axillaris HOM05D002168 ORTHO05D002277 1.9e-20 103.2 80 72.5
Sopen08g019820 Solanum pennellii HOM05D002168 ORTHO05D002277 1.9e-20 103.2 80 72.5
PGSC0003DMG401007628 Solanum tuberosum HOM05D002168 ORTHO05D002277 1.9e-20 103.2 80 72.5
AL3G13510 Arabidopsis lyrata HOM05D002168 ORTHO05D002277 2.4e-20 102.8 80 70.0
AT3G03710 Arabidopsis thaliana HOM05D002168 ORTHO05D002277 2.4e-20 102.8 80 70.0
BcaB04g19361 Brassica carinata HOM05D002168 ORTHO05D002277 2.4e-20 102.8 80 70.0
BcaC01g04394 Brassica carinata HOM05D002168 ORTHO05D002277 2.4e-20 102.8 80 70.0
BcaC05g30255 Brassica carinata HOM05D002168 ORTHO05D002277 2.4e-20 102.8 80 70.0
A03p33360 Brassica napus HOM05D002168 ORTHO05D002277 2.4e-20 102.8 80 70.0
A05p43660 Brassica napus HOM05D002168 ORTHO05D002277 2.4e-20 102.8 80 70.0
C03p40600 Brassica napus HOM05D002168 ORTHO05D002277 2.4e-20 102.8 80 70.0
BolC3t16325H Brassica oleracea HOM05D002168 ORTHO05D002277 2.4e-20 102.8 80 70.0
BolC5t34986H Brassica oleracea HOM05D002168 ORTHO05D002277 2.4e-20 102.8 80 70.0
BraA03t12507Z Brassica rapa HOM05D002168 ORTHO05D002277 2.4e-20 102.8 80 70.0
BraA05t23104Z Brassica rapa HOM05D002168 ORTHO05D002277 2.4e-20 102.8 80 70.0
Carub.0003s0287 Capsella rubella HOM05D002168 ORTHO05D002277 2.4e-20 102.8 80 70.0
CARHR077770 Cardamine hirsuta HOM05D002168 ORTHO05D002277 2.4e-20 102.8 80 70.0
Thhalv10020014m.g Eutrema salsugineum HOM05D002168 ORTHO05D002277 2.4e-20 102.8 80 70.0
Thecc.05G242400 Theobroma cacao HOM05D002168 ORTHO05D002277 3.2e-20 102.4 80 71.2
Ah.04g153620 Amaranthus hybridus HOM05D002168 ORTHO05D002277 5.4e-20 101.7 80 71.2
THA.LOC104802884 Tarenaya hassleriana HOM05D002168 ORTHO05D002277 5.4e-20 101.7 80 68.8
Sp3g02680 Schrenkiella parvula HOM05D002168 ORTHO05D002277 9.2e-20 100.9 80 68.8
CiPaw.09G166700 Carya illinoinensis HOM05D002168 ORTHO05D002277 1.6e-19 100.1 80 68.8
Nitab4.5_0005671g0040 Nicotiana tabacum HOM05D002168 ORTHO05D002277 1.6e-19 100.1 80 70.0
ATR0697G078 Amborella trichopoda HOM05D002168 ORTHO05D002277 2.7e-19 99.4 80 68.8
Lj1A1072T24 Lonicera japonica HOM05D002168 ORTHO05D002277 2.7e-19 99.4 68 75.0
HPP92_014138 Vanilla planifolia HOM05D002168 ORTHO05D002277 3.5e-19 99.0 82 67.1
HPP92_014245 Vanilla planifolia HOM05D002168 ORTHO05D002277 3.5e-19 99.0 82 67.1
Os07g0168000 Oryza sativa ssp. japonica HOM05D002168 ORTHO05D002277 4.6e-19 98.6 80 68.8
HPP92_026508 Vanilla planifolia HOM05D002168 ORTHO05D002277 1.0e-18 97.4 80 67.5
Zm00001eb300920 Zea mays HOM05D002168 ORTHO05D002277 1.0e-18 97.4 80 66.2
unitig_60.g25486 Utricularia gibba HOM05D002168 ORTHO05D002277 8.6e-18 94.4 90 58.9
Mapoly0041s0034 Marchantia polymorpha HOM05D002168 ORTHO05D002277 1.1e-17 94.0 80 63.8
CBR_g5744 Chara braunii HOM05D002168 ORTHO05D002277 8.1e-16 87.8 80 60.0
Pp3c6_15550 Physcomitrium patens HOM05D002168 ORTHO05D002277 8.1e-16 87.8 80 61.2
AagrBONN_evm.TU.Sc2ySwM_340.482 Anthoceros agrestis HOM05D002168 ORTHO05D002277 8.9e-15 84.3 80 57.5
SMO364G0479 Selaginella moellendorffii HOM05D002168 ORTHO05D002277 2.0e-14 83.2 81 55.6
CSS0041842 Camellia sinensis var. sinensis HOM05D002168 ORTHO05D002277 9.8e-14 80.9 64 71.9
MCO09G785 Micromonas commoda HOM05D002168 ORTHO05D002277 4.9e-13 78.6 80 57.5
PRCOL_00002921 Prasinoderma coloniale HOM05D002168 ORTHO05D002277 9.2e-12 74.3 80 52.5
CBR_g30163 Chara braunii HOM05D002168 ORTHO05D002277 2.7e-11 72.8 96 46.9
Cre04.g214501 Chlamydomonas reinhardtii HOM05D002168 ORTHO05D002277 1.3e-10 70.5 80 52.5
Lsat_1_v5_gn_0_46020 Lactuca sativa HOM05D002168 ORTHO05D002277 6.2e-08 61.6 80 46.2
Gohir.A09G028200 Gossypium hirsutum HOM05D002168 ORTHO05D002277 1.4e-07 60.5 83 43.4
Gohir.D09G027600 Gossypium hirsutum HOM05D002168 ORTHO05D002277 3.1e-07 59.3 83 43.4
Gorai.006G032100 Gossypium raimondii HOM05D002168 ORTHO05D002277 3.1e-07 59.3 83 43.4
PRCOL_00001677 Prasinoderma coloniale HOM05D001545 ORTHO05D001600 4.0e-07 58.9 84 45.2
Ah.09g232220 Amaranthus hybridus HOM05D002168 ORTHO05D002277 5.2e-07 58.5 83 44.6
MCO10G297 Micromonas commoda HOM05D002168 ORTHO05D002277 5.2e-07 58.5 83 45.8
unitig_52.g17662 Utricularia gibba HOM05D002168 ORTHO05D002277 6.8e-07 58.2 83 43.4
SMO351G0216 Selaginella moellendorffii HOM05D002168 ORTHO05D002277 8.9e-07 57.8 81 44.4
MSTRG.24029 Avicennia marina HOM05D002168 ORTHO05D002277 1.2e-06 57.4 83 43.4
Cc07_g01920 Coffea canephora HOM05D002168 ORTHO05D002277 1.2e-06 57.4 83 42.2
Rhsim08G0052300 Rhododendron simsii HOM05D002168 ORTHO05D002277 1.2e-06 57.4 101 38.6
Thecc.04G014200 Theobroma cacao HOM05D002168 ORTHO05D002277 1.2e-06 57.4 83 42.2
Cpa.g.sc108.35 Carica papaya HOM05D002168 ORTHO05D002277 1.5e-06 57.0 83 43.4
COL.COLO4_29057 Corchorus olitorius HOM05D002168 ORTHO05D002277 1.5e-06 57.0 83 42.2
SEGI_31182 Sequoiadendron giganteum HOM05D002168 ORTHO05D002277 1.5e-06 57.0 83 44.6
AagrBONN_evm.TU.Sc2ySwM_344.2242__2243 Anthoceros agrestis HOM05D002168 ORTHO05D002277 2.0e-06 56.6 81 45.7
AT5G14580 Arabidopsis thaliana HOM05D002168 ORTHO05D002277 2.0e-06 56.6 83 41.0
A03p06680 Brassica napus HOM05D002168 ORTHO05D002277 2.0e-06 56.6 84 39.3
MELO3C009975.2 Cucumis melo HOM05D002168 ORTHO05D002277 2.0e-06 56.6 83 44.6
SHI24542 Sapria himalayana HOM05D002168 ORTHO05D002277 2.0e-06 56.6 83 42.2
arahy.Tifrunner.gnm1.ann1.SUJ4K6 Arachis hypogaea HOM05D002168 ORTHO05D002277 2.6e-06 56.2 83 41.0
FvH4_6g51050 Fragaria vesca HOM05D002168 ORTHO05D002277 2.6e-06 56.2 83 39.8
FAN02G2577 Fragaria x ananassa HOM05D002168 ORTHO05D002277 2.6e-06 56.2 83 39.8
FAN14G2665 Fragaria x ananassa HOM05D002168 ORTHO05D002277 2.6e-06 56.2 83 39.8
CDE05G1403 Ceratophyllum demersum HOM05D002168 ORTHO05D002277 3.4e-06 55.8 83 41.0
Migut.H00092 Erythranthe guttata HOM05D002168 ORTHO05D002277 3.4e-06 55.8 83 41.0
FAN09G4671 Fragaria x ananassa HOM05D002168 ORTHO05D002277 3.4e-06 55.8 83 41.0
PGSC0003DMG400000516 Solanum tuberosum HOM05D002168 ORTHO05D002277 3.4e-06 55.8 83 42.2
SGA_v2.0_scaffold135G34895 Striga asiatica HOM05D002168 ORTHO05D002277 3.4e-06 55.8 83 42.2
Aa31LG11G15340 Aethionema arabicum HOM05D001485 ORTHO05D002277 4.4e-06 55.5 83 41.0
arahy.Tifrunner.gnm1.ann1.P30KPE Arachis hypogaea HOM05D002168 ORTHO05D002277 4.4e-06 55.5 83 42.2
EL10Ac8g19521 Beta vulgaris HOM05D002168 ORTHO05D002277 4.4e-06 55.5 83 42.2
RcHm_v2.0_Chr2g0172601 Rosa chinensis HOM05D002168 ORTHO05D002277 4.4e-06 55.5 83 41.0
Sc16g0003290 Simmondsia chinensis HOM05D002168 ORTHO05D002277 4.4e-06 55.5 94 38.3
Aqoxy3G02862 Aquilegia oxysepala HOM05D002168 ORTHO05D002277 5.8e-06 55.1 83 42.2
C03p07710 Brassica napus HOM05D002168 ORTHO05D002277 5.8e-06 55.1 83 41.0
BolC3t13271H Brassica oleracea HOM05D002168 ORTHO05D002277 5.8e-06 55.1 83 41.0
BolC9t59092H Brassica oleracea HOM05D002168 ORTHO05D002277 5.8e-06 55.1 83 41.0
CSS0007819 Camellia sinensis var. sinensis HOM05D002168 ORTHO05D002277 5.8e-06 55.1 101 38.6
CSS0018850 Camellia sinensis var. sinensis HOM05D002168 ORTHO05D002277 5.8e-06 55.1 101 38.6
Carub.0006s1275 Capsella rubella HOM05D002168 ORTHO05D002277 5.8e-06 55.1 83 41.0
CARHR198740 Cardamine hirsuta HOM05D002168 ORTHO05D002277 5.8e-06 55.1 83 42.2
Duzib147G1710 Durio zibethinus HOM05D002168 ORTHO05D002277 5.8e-06 55.1 83 41.0
Thhalv10012572m.g Eutrema salsugineum HOM05D002168 ORTHO05D002277 5.8e-06 55.1 83 41.0
Lj7C738T14 Lonicera japonica HOM05D002168 ORTHO05D002277 5.8e-06 55.1 83 41.0
Mapoly0003s0246 Marchantia polymorpha HOM05D002168 ORTHO05D002277 5.8e-06 55.1 81 44.4
Nn4g22702 Nelumbo nucifera HOM05D002168 ORTHO05D002277 5.8e-06 55.1 83 42.2
Sp6g29450 Schrenkiella parvula HOM05D002168 ORTHO05D002277 5.8e-06 55.1 83 41.0
Sed0013184 Sechium edule HOM05D002168 ORTHO05D002277 5.8e-06 55.1 83 43.4
AL6G25340 Arabidopsis lyrata HOM05D002168 ORTHO05D002277 7.6e-06 54.7 83 39.8
BcaB01g05104 Brassica carinata HOM05D002168 ORTHO05D002277 7.6e-06 54.7 83 41.0
BraA03t10002Z Brassica rapa HOM05D002168 ORTHO05D002277 7.6e-06 54.7 83 41.0
Eucgr.J02224 Eucalyptus grandis HOM05D002168 ORTHO05D002277 7.6e-06 54.7 83 41.0
Glyma.19G005800 Glycine max HOM05D002168 ORTHO05D002277 7.6e-06 54.7 83 41.0
HanXRQChr17g0548341 Helianthus annuus HOM05D002168 ORTHO05D002277 7.6e-06 54.7 83 42.2
Pp3c2_19900 Physcomitrium patens HOM05D002168 ORTHO05D002277 7.6e-06 54.7 83 43.4
C09p62520 Brassica napus HOM05D002168 ORTHO05D002277 9.9e-06 54.3 83 41.0
Lsat_1_v5_gn_0_19560 Lactuca sativa HOM05D002168 ORTHO05D002277 9.9e-06 54.3 83 41.0
Peaxi162Scf00129g01334 Petunia axillaris HOM05D002168 ORTHO05D002277 9.9e-06 54.3 83 41.0
Prupe.3G288400 Prunus persica HOM05D002168 ORTHO05D002277 9.9e-06 54.3 83 41.0
Solyc02g086600.3 Solanum lycopersicum HOM05D002168 ORTHO05D002277 9.9e-06 54.3 83 39.8
Sopen02g031360 Solanum pennellii HOM05D002168 ORTHO05D002277 9.9e-06 54.3 83 39.8
TWI56G0079 Tripterygium wilfordii HOM05D002168 ORTHO05D002277 9.9e-06 54.3 83 41.0
vmacro18267 Vaccinium macrocarpon HOM05D002168 ORTHO05D002277 9.9e-06 54.3 101 37.6
Zm00001eb247190 Zea mays HOM05D002168 ORTHO05D002277 9.9e-06 54.3 83 42.2


User provided reference genes

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