Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.0e-48 195.3 90 100.0
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.4e-42 173.7 86 91.9
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 8.3e-42 173.3 86 90.7
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.9e-41 172.2 86 90.7
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.0e-40 167.2 89 85.4
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.3e-39 166.0 85 89.4
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 4.3e-38 161.0 78 93.6
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 8.0e-37 156.8 75 96.0
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 8.0e-37 156.8 75 96.0
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 1.8e-36 155.6 75 94.7
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 1.8e-36 155.6 75 94.7
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 1.8e-36 155.6 75 94.7
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 1.8e-36 155.6 75 94.7
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 1.8e-36 155.6 75 94.7
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 1.8e-36 155.6 75 94.7
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 1.8e-36 155.6 75 94.7
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 1.8e-36 155.6 75 94.7
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 2.3e-36 155.2 75 93.3
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 2.3e-36 155.2 75 93.3
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 2.3e-36 155.2 75 93.3
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 2.3e-36 155.2 75 93.3
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 2.3e-36 155.2 75 93.3
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 2.3e-36 155.2 75 93.3
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 2.3e-36 155.2 75 93.3
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 4.0e-36 154.5 75 93.3
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 4.0e-36 154.5 75 93.3
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 4.0e-36 154.5 75 93.3
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 4.0e-36 154.5 75 92.0
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 4.0e-36 154.5 75 93.3
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 5.2e-36 154.1 75 90.7
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 5.2e-36 154.1 75 93.3
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 5.2e-36 154.1 75 92.0
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 6.8e-36 153.7 75 92.0
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 6.8e-36 153.7 75 93.3
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 1.2e-35 152.9 75 90.7
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 1.2e-35 152.9 75 90.7
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 1.2e-35 152.9 75 90.7
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 1.2e-35 152.9 75 92.0
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 1.2e-35 152.9 75 93.3
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 1.5e-35 152.5 75 90.7
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 1.5e-35 152.5 75 90.7
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 1.5e-35 152.5 75 90.7
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 1.5e-35 152.5 75 90.7
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 1.5e-35 152.5 75 93.3
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 1.5e-35 152.5 75 90.7
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 1.5e-35 152.5 75 93.3
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 1.5e-35 152.5 75 92.0
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 2.0e-35 152.1 75 90.7
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 2.0e-35 152.1 75 90.7
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 2.0e-35 152.1 75 90.7
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 2.0e-35 152.1 75 90.7
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 2.0e-35 152.1 75 90.7
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 2.0e-35 152.1 75 90.7
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 2.0e-35 152.1 75 88.0
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 2.0e-35 152.1 75 90.7
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 2.6e-35 151.8 75 89.3
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 2.6e-35 151.8 75 90.7
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 2.6e-35 151.8 75 90.7
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 2.6e-35 151.8 75 90.7
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 2.6e-35 151.8 75 90.7
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 2.6e-35 151.8 75 90.7
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 3.4e-35 151.4 75 89.3
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 3.4e-35 151.4 75 89.3
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 3.4e-35 151.4 75 93.3
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 3.4e-35 151.4 75 90.7
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 3.4e-35 151.4 75 89.3
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 4.4e-35 151.0 75 92.0
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 5.8e-35 150.6 75 90.7
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 5.8e-35 150.6 75 89.3
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 5.8e-35 150.6 75 89.3
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 5.8e-35 150.6 75 89.3
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 7.5e-35 150.2 75 89.3
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 7.5e-35 150.2 75 89.3
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 9.8e-35 149.8 77 87.0
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 1.3e-34 149.4 75 89.3
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 1.3e-34 149.4 75 90.7
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 1.3e-34 149.4 75 89.3
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 1.3e-34 149.4 75 88.0
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 1.7e-34 149.1 79 84.8
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 1.7e-34 149.1 75 89.3
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 1.7e-34 149.1 75 89.3
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 1.7e-34 149.1 75 89.3
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 1.7e-34 149.1 75 89.3
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 1.7e-34 149.1 75 89.3
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 2.2e-34 148.7 79 83.5
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 2.2e-34 148.7 79 83.5
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 2.2e-34 148.7 79 83.5
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 2.2e-34 148.7 75 88.0
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 3.7e-34 147.9 75 89.3
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 3.7e-34 147.9 75 89.3
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 4.9e-34 147.5 75 89.3
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 4.9e-34 147.5 75 89.3
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 4.9e-34 147.5 75 88.0
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 6.4e-34 147.1 79 83.5
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 6.4e-34 147.1 79 83.5
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 6.4e-34 147.1 75 88.0
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 8.3e-34 146.7 79 83.5
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 8.3e-34 146.7 75 88.0
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 8.3e-34 146.7 75 86.7
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 1.1e-33 146.4 75 84.0
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 1.1e-33 146.4 74 87.8
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 1.1e-33 146.4 75 88.0
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 1.1e-33 146.4 75 88.0
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 1.1e-33 146.4 75 86.7
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 1.1e-33 146.4 75 88.0
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 2.4e-33 145.2 79 82.3
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 2.4e-33 145.2 79 82.3
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 3.2e-33 144.8 75 88.0
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 4.1e-33 144.4 79 81.0
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 5.4e-33 144.1 75 85.3
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 7.0e-33 143.7 75 85.3
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 7.0e-33 143.7 79 81.0
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 7.0e-33 143.7 75 86.7
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 1.2e-32 142.9 79 81.0
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 2.1e-32 142.1 75 85.3
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 2.1e-32 142.1 75 86.7
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 2.7e-32 141.7 75 81.3
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 4.6e-32 141.0 74 82.4
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 6.0e-32 140.6 74 81.1
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 1.0e-31 139.8 75 80.0
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.3e-31 139.4 79 84.8
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 2.3e-31 138.7 74 79.7
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 6.6e-31 137.1 80 81.2
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 1.1e-30 136.3 74 79.7
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 5.6e-30 134.0 72 84.7
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 1.2e-29 132.9 75 78.7
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 3.6e-29 131.3 98 66.3
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 3.1e-28 128.3 75 76.0
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 2.0e-27 125.6 75 74.7
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 2.2e-26 122.1 75 70.7
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 2.9e-26 121.7 75 74.7
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 5.4e-25 117.5 66 80.3
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 1.9e-22 109.0 73 60.3
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 5.6e-22 107.5 53 86.8
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 6.2e-21 104.0 76 64.5
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 5.8e-19 97.4 53 81.1
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 9.2e-17 90.1 44 88.6
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.3e-10 69.7 32 87.5
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 2.4e-09 65.5 82 37.8
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 3.2e-09 65.1 72 48.6
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 5.4e-09 64.3 31 93.5
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 9.3e-09 63.5 31 83.9
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 1.2e-08 63.2 47 59.6
PSO017G1218 Papaver somniferum HOM05D003791 ORTHO05D303438 5.1e-07 57.8 31 71.0
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 4.3e-06 54.7 32 75.0


User provided reference genes

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