Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 8.5e-47 189.9 89 100.0
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 9.7e-43 176.4 89 91.0
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.8e-42 174.9 89 89.9
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.8e-41 172.2 86 90.7
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.0e-39 166.4 86 88.4
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.9e-38 162.2 89 84.3
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 3.9e-36 154.5 77 90.9
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 8.8e-36 153.3 76 92.1
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 8.8e-36 153.3 76 92.1
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 1.5e-35 152.5 76 90.8
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 2.0e-35 152.1 76 90.8
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 2.0e-35 152.1 76 90.8
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 2.0e-35 152.1 76 90.8
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 2.0e-35 152.1 76 90.8
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 2.0e-35 152.1 76 90.8
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 2.0e-35 152.1 76 90.8
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 2.0e-35 152.1 76 90.8
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 2.6e-35 151.8 76 88.2
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 2.6e-35 151.8 76 89.5
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 2.6e-35 151.8 76 89.5
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 2.6e-35 151.8 76 89.5
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 2.6e-35 151.8 75 92.0
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 2.6e-35 151.8 76 89.5
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 2.6e-35 151.8 76 89.5
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 2.6e-35 151.8 76 89.5
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 2.6e-35 151.8 76 89.5
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 2.6e-35 151.8 76 89.5
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 3.3e-35 151.4 76 88.2
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 3.3e-35 151.4 76 88.2
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 4.4e-35 151.0 76 89.5
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 4.4e-35 151.0 76 89.5
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 4.4e-35 151.0 76 90.8
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 4.4e-35 151.0 76 88.2
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 4.4e-35 151.0 76 89.5
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 4.4e-35 151.0 76 89.5
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 4.4e-35 151.0 76 89.5
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 5.7e-35 150.6 76 88.2
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 5.7e-35 150.6 76 88.2
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 5.7e-35 150.6 76 86.8
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 5.7e-35 150.6 76 88.2
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 5.7e-35 150.6 76 88.2
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 5.7e-35 150.6 76 89.5
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 7.4e-35 150.2 76 88.2
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 7.4e-35 150.2 76 89.5
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 7.4e-35 150.2 76 88.2
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 7.4e-35 150.2 76 88.2
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 7.4e-35 150.2 76 88.2
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 7.4e-35 150.2 76 88.2
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 7.4e-35 150.2 76 88.2
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 7.4e-35 150.2 76 85.5
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 1.3e-34 149.4 76 88.2
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 1.3e-34 149.4 76 89.5
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 1.3e-34 149.4 76 86.8
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 1.3e-34 149.4 76 86.8
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 1.3e-34 149.4 76 86.8
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 1.3e-34 149.4 76 89.5
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 1.3e-34 149.4 76 88.2
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 1.7e-34 149.1 76 89.5
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 1.7e-34 149.1 76 89.5
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 2.2e-34 148.7 76 88.2
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 2.2e-34 148.7 76 86.8
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 2.2e-34 148.7 76 86.8
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 2.2e-34 148.7 76 86.8
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 2.2e-34 148.7 76 88.2
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 2.2e-34 148.7 76 88.2
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 2.2e-34 148.7 76 88.2
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 2.2e-34 148.7 76 86.8
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 2.2e-34 148.7 76 86.8
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 2.2e-34 148.7 76 86.8
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 2.8e-34 148.3 76 86.8
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 2.8e-34 148.3 76 86.8
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 2.8e-34 148.3 76 86.8
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 2.8e-34 148.3 76 86.8
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 2.8e-34 148.3 78 84.6
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 3.7e-34 147.9 76 86.8
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 3.7e-34 147.9 78 84.6
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 3.7e-34 147.9 76 89.5
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 3.7e-34 147.9 76 89.5
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 4.8e-34 147.5 76 85.5
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 4.8e-34 147.5 76 85.5
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 4.8e-34 147.5 76 85.5
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 4.8e-34 147.5 76 86.8
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 4.8e-34 147.5 76 86.8
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 4.8e-34 147.5 76 85.5
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 6.3e-34 147.1 76 88.2
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 6.3e-34 147.1 76 86.8
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 6.3e-34 147.1 76 86.8
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 6.3e-34 147.1 76 86.8
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 8.2e-34 146.7 76 86.8
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 1.1e-33 146.4 78 83.3
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 1.4e-33 146.0 76 85.5
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 1.4e-33 146.0 76 85.5
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 1.4e-33 146.0 76 85.5
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 1.4e-33 146.0 76 86.8
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 1.4e-33 146.0 76 86.8
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 1.4e-33 146.0 76 85.5
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 2.4e-33 145.2 76 85.5
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 2.4e-33 145.2 76 86.8
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 4.1e-33 144.4 76 85.5
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 4.1e-33 144.4 76 81.6
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 4.1e-33 144.4 76 85.5
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 4.1e-33 144.4 76 85.5
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 4.1e-33 144.4 78 83.3
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 5.3e-33 144.1 76 84.2
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 5.3e-33 144.1 76 84.2
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 5.3e-33 144.1 78 82.1
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 5.3e-33 144.1 76 85.5
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 7.0e-33 143.7 76 84.2
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 9.1e-33 143.3 76 82.9
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 1.2e-32 142.9 76 85.5
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 1.2e-32 142.9 76 84.2
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 1.2e-32 142.9 76 81.6
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 2.0e-32 142.1 76 84.2
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 7.7e-32 140.2 75 82.7
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 1.0e-31 139.8 76 78.9
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 2.2e-31 138.7 76 81.6
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 2.2e-31 138.7 76 82.9
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.9e-31 138.3 80 82.5
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 5.0e-31 137.5 76 80.3
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 5.0e-31 137.5 76 77.6
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 6.5e-31 137.1 76 76.3
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 1.9e-30 135.6 81 80.2
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 5.5e-30 134.0 76 75.0
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 9.4e-30 133.3 78 73.1
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 4.7e-29 131.0 76 76.3
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 8.0e-29 130.2 72 81.9
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 4.0e-28 127.9 99 63.6
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 2.6e-27 125.2 76 73.7
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 2.8e-26 121.7 75 72.0
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 1.8e-25 119.0 76 67.1
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 2.4e-25 118.6 77 70.1
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 7.7e-24 113.6 66 77.3
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 2.9e-23 111.7 73 63.0
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 3.0e-20 101.7 78 61.5
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 8.8e-20 100.1 54 77.8
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 8.3e-18 93.6 54 75.9
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 7.0e-17 90.5 45 86.7
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 2.0e-11 72.4 33 90.9
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 1.1e-09 66.6 83 39.8
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 1.2e-08 63.2 31 83.9
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.0e-08 62.4 31 90.3
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 1.3e-07 59.7 72 43.1
PSO017G1218 Papaver somniferum HOM05D003791 ORTHO05D303438 6.6e-07 57.4 31 71.0
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 6.6e-07 57.4 48 50.0
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 7.3e-06 53.9 32 75.0


User provided reference genes

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