Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032132 Camellia sinensis var. sinensis HOM05D001829 ORTHO05D003548 8.5e-73 276.9 144 100.0
CSS0015167 Camellia sinensis var. sinensis HOM05D001829 ORTHO05D003548 1.8e-46 189.5 119 84.9
vmacro19858 Vaccinium macrocarpon HOM05D001829 ORTHO05D003548 3.1e-46 188.7 119 81.5
Rhsim05G0113200 Rhododendron simsii HOM05D001829 ORTHO05D003548 4.4e-45 184.9 121 79.3
Dinv19424 Davidia involucrata HOM05D001829 ORTHO05D003548 1.1e-43 180.3 119 79.8
Actinidia01613 Actinidia chinensis HOM05D000487 ORTHO05D000405 2.4e-43 179.1 119 82.4
Actinidia26178 Actinidia chinensis HOM05D001829 ORTHO05D003548 1.3e-41 173.3 119 81.5
Dinv29604 Davidia involucrata HOM05D001829 ORTHO05D003548 3.9e-41 171.8 119 79.0
Rhsim11G0121900 Rhododendron simsii HOM05D001829 ORTHO05D003548 9.5e-40 167.2 140 69.3
Actinidia38991 Actinidia chinensis HOM05D001829 ORTHO05D003548 2.9e-36 155.6 119 72.3
GSVIVG01023232001 Vitis vinifera HOM05D001829 ORTHO05D003548 2.9e-36 155.6 119 71.4
Potri.004G225800 Populus trichocarpa HOM05D001829 ORTHO05D003548 4.9e-36 154.8 119 70.6
vmacro01706 Vaccinium macrocarpon HOM05D001829 ORTHO05D003548 4.9e-36 154.8 128 67.2
Sabra01G0171500 Salix brachista HOM05D001829 ORTHO05D003548 9.2e-35 150.6 119 70.6
CiPaw.05G003800 Carya illinoinensis HOM05D001829 ORTHO05D003548 6.6e-33 144.4 119 64.7
Manes.10G116400 Manihot esculenta HOM05D001829 ORTHO05D003548 1.5e-32 143.3 127 65.4
TAR381G0284 Trochodendron aralioides HOM05D001829 ORTHO05D003548 2.5e-32 142.5 148 58.8
Oeu030852.1 Olea europaea HOM05D001829 ORTHO05D003548 7.3e-32 141.0 119 64.7
Haze_10033 Corylus avellana HOM05D001829 ORTHO05D003548 1.4e-30 136.7 119 63.9
Hma1.2p1_0633F.1_g192740 Hydrangea macrophylla HOM05D001829 ORTHO05D003548 1.8e-30 136.3 117 65.8
Thecc.02G016800 Theobroma cacao HOM05D001829 ORTHO05D003548 2.4e-30 136.0 119 68.1
Hma1.2p1_0884F.1_g232370 Hydrangea macrophylla HOM05D001829 ORTHO05D003548 3.1e-30 135.6 119 65.5
Manes.07G025700 Manihot esculenta HOM05D001829 ORTHO05D003548 5.2e-30 134.8 119 65.5
Ciclev10000901m.g Citrus clementina HOM05D001829 ORTHO05D003548 6.8e-30 134.4 119 67.2
SalBow7G4033 Salvia bowleyana HOM05D001829 ORTHO05D003548 6.8e-30 134.4 132 54.5
Cpa.g.sc113.29 Carica papaya HOM05D001829 ORTHO05D003548 8.9e-30 134.0 119 65.5
Solyc01g103420.4 Solanum lycopersicum HOM05D001829 ORTHO05D003548 2.0e-29 132.9 119 64.7
PGSC0003DMG400024884 Solanum tuberosum HOM05D001829 ORTHO05D003548 2.6e-29 132.5 119 64.7
COL.COLO4_17710 Corchorus olitorius HOM05D001829 ORTHO05D003548 4.4e-29 131.7 119 64.7
Prupe.1G581100 Prunus persica HOM05D001829 ORTHO05D003548 4.4e-29 131.7 105 67.6
QL02p100929 Quercus lobata HOM05D001829 ORTHO05D003548 4.4e-29 131.7 119 63.9
MD08G1243800 Malus domestica HOM05D001829 ORTHO05D003548 5.8e-29 131.3 115 65.2
Oeu045913.1 Olea europaea HOM05D001829 ORTHO05D003548 5.8e-29 131.3 119 61.3
Sopen01g045770 Solanum pennellii HOM05D001829 ORTHO05D003548 5.8e-29 131.3 119 64.7
Migut.B00752 Erythranthe guttata HOM05D001829 ORTHO05D003548 7.6e-29 131.0 119 60.5
DCAR_029162 Daucus carota HOM05D001829 ORTHO05D003548 1.3e-28 130.2 130 58.5
TAR628G0621 Trochodendron aralioides HOM05D001829 ORTHO05D003548 2.2e-28 129.4 137 60.6
Potri.003G005700 Populus trichocarpa HOM05D001829 ORTHO05D003548 2.9e-28 129.0 110 68.2
TWI14G0679 Tripterygium wilfordii HOM05D001829 ORTHO05D003548 2.9e-28 129.0 137 55.5
TWI59G0266 Tripterygium wilfordii HOM05D001829 ORTHO05D003548 2.9e-28 129.0 118 61.0
MD15G1438000 Malus domestica HOM05D001829 ORTHO05D003548 6.4e-28 127.9 115 61.7
Nitab4.5_0000787g0020 Nicotiana tabacum HOM05D001829 ORTHO05D003548 1.9e-27 126.3 110 65.5
Sabra03G0002900 Salix brachista HOM05D001829 ORTHO05D007093 1.9e-27 126.3 123 61.8
Cc02_g23320 Coffea canephora HOM05D001829 ORTHO05D003548 3.2e-27 125.6 119 64.7
Duzib248G0405 Durio zibethinus HOM05D001829 ORTHO05D003548 9.2e-27 124.0 123 60.2
Atru.chr6.543 Acer truncatum HOM05D001829 ORTHO05D003548 2.1e-26 122.9 119 61.3
CAN.G855.15 Capsicum annuum HOM05D001829 ORTHO05D003548 2.1e-26 122.9 119 61.3
Peaxi162Scf00152g01538 Petunia axillaris HOM05D001829 ORTHO05D003548 2.7e-26 122.5 119 62.2
ECA236G4953 Erigeron canadensis HOM05D001829 ORTHO05D003548 3.5e-26 122.1 121 62.8
PGR042G1417 Punica granatum HOM05D001829 ORTHO05D003548 4.6e-26 121.7 121 57.0
Nitab4.5_0005169g0060 Nicotiana tabacum HOM05D001829 ORTHO05D003548 2.3e-25 119.4 110 63.6
Peaxi162Scf00011g01537 Petunia axillaris HOM05D001829 ORTHO05D003548 2.3e-25 119.4 110 67.3
MSTRG.27868 Avicennia marina HOM05D001829 ORTHO05D003548 3.0e-25 119.0 118 57.6
Gorai.008G045900 Gossypium raimondii HOM05D001829 ORTHO05D003548 3.0e-25 119.0 119 61.3
Gohir.D12G043600 Gossypium hirsutum HOM05D001829 ORTHO05D003548 8.7e-25 117.5 119 61.3
Gohir.A12G044600 Gossypium hirsutum HOM05D001829 ORTHO05D003548 1.9e-24 116.3 119 60.5
SGA_v2.0_scaffold42G15901 Striga asiatica HOM05D001829 ORTHO05D003548 3.3e-24 115.5 110 57.3
Lsat_1_v5_gn_9_119700 Lactuca sativa HOM05D001829 ORTHO05D003548 7.3e-24 114.4 121 58.7
Nn5g27503 Nelumbo nucifera HOM05D001829 ORTHO05D003548 1.2e-23 113.6 139 51.8
Nitab4.5_0000667g0010 Nicotiana tabacum HOM05D001829 ORTHO05D003548 1.6e-23 113.2 126 57.1
Nitab4.5_0001144g0040 Nicotiana tabacum HOM05D001829 ORTHO05D003548 2.1e-23 112.8 126 56.3
Sopen10g009260 Solanum pennellii HOM05D001829 ORTHO05D003548 2.1e-23 112.8 120 58.3
Eucgr.I02778 Eucalyptus grandis HOM05D001829 ORTHO05D003548 2.8e-23 112.5 119 54.6
Duzib132G1055 Durio zibethinus HOM05D001829 ORTHO05D003548 4.7e-23 111.7 119 60.5
QL09p004825 Quercus lobata HOM05D001829 ORTHO05D003548 1.4e-22 110.2 135 51.1
Migut.N00848 Erythranthe guttata HOM05D001829 ORTHO05D003548 6.9e-22 107.8 138 52.2
Oeu043625.3 Olea europaea HOM05D001829 ORTHO05D003548 1.2e-21 107.1 119 54.6
Solyc10g044450.3 Solanum lycopersicum HOM05D001829 ORTHO05D003548 1.2e-21 107.1 109 55.0
ATR1136G031 Amborella trichopoda HOM05D001829 ORTHO05D003548 1.5e-21 106.7 128 48.4
VMungo1080G1494 Vigna mungo HOM05D001829 ORTHO05D003548 5.8e-21 104.8 135 51.1
PSO017G6510 Papaver somniferum HOM05D001829 ORTHO05D003548 2.9e-20 102.4 124 53.2
SGA_v2.0_scaffold249G44938 Striga asiatica HOM05D001829 ORTHO05D003548 2.9e-20 102.4 123 49.6
CiPaw.06G175000 Carya illinoinensis HOM05D001829 ORTHO05D003548 4.9e-20 101.7 140 47.1
Ca_05538_v3 Cicer arietinum L. HOM05D001829 ORTHO05D003548 4.9e-20 101.7 149 47.0
PSO170G5852 Papaver somniferum HOM05D001829 ORTHO05D003548 6.4e-20 101.3 124 52.4
Cfa008128 Carpinus fangiana HOM05D001829 ORTHO05D003548 8.4e-20 100.9 133 50.4
FAN13G0664 Fragaria x ananassa HOM05D001829 ORTHO05D003548 1.4e-19 100.1 129 48.8
CANSAT25G1748 Cannabis sativa HOM05D001829 ORTHO05D003548 1.9e-19 99.8 133 50.4
Phvul.005G000800 Phaseolus vulgaris HOM05D001829 ORTHO05D003548 1.9e-19 99.8 135 48.9
Hund17550 Selenicereus undatus HOM05D001829 ORTHO05D003548 1.9e-19 99.8 120 50.0
TPR.G25505 Trifolium pratense HOM05D001829 ORTHO05D003548 2.4e-19 99.4 138 47.1
FAN08G2186 Fragaria x ananassa HOM05D001829 ORTHO05D003548 3.2e-19 99.0 129 48.8
arahy.Tifrunner.gnm1.ann1.PU5J2F Arachis hypogaea HOM05D001829 ORTHO05D003548 4.2e-19 98.6 148 47.3
Atru.chr13.2294 Acer truncatum HOM05D001829 ORTHO05D003548 7.1e-19 97.8 123 52.0
FvH4_5g32510 Fragaria vesca HOM05D001829 ORTHO05D003548 1.2e-18 97.1 129 48.1
FAN18G3448 Fragaria x ananassa HOM05D001829 ORTHO05D003548 1.2e-18 97.1 129 48.1
arahy.Tifrunner.gnm1.ann1.UF24CP Arachis hypogaea HOM05D001829 ORTHO05D003548 2.7e-18 95.9 146 47.3
Glyma.06G324500 Glycine max HOM05D001829 ORTHO05D003548 2.7e-18 95.9 135 49.6
Haze_13907 Corylus avellana HOM05D001829 ORTHO05D003548 3.5e-18 95.5 127 51.2
Medtr3g005510 Medicago truncatula HOM05D001829 ORTHO05D003548 4.6e-18 95.1 135 45.9
RcHm_v2.0_Chr7g0229091 Rosa chinensis HOM05D001829 ORTHO05D003548 4.6e-18 95.1 129 48.8
CANSAT54G1136 Cannabis sativa HOM05D001829 ORTHO05D003548 1.0e-17 94.0 120 50.0
Ca_00041_v3 Cicer arietinum L. HOM05D001829 ORTHO05D003548 1.0e-17 94.0 120 52.5
Gohir.D02G237100 Gossypium hirsutum HOM05D001829 ORTHO05D003548 1.3e-17 93.6 119 52.1
Gorai.005G265700 Gossypium raimondii HOM05D001829 ORTHO05D003548 1.3e-17 93.6 119 52.1
Psat1g222920 Pisum sativum HOM05D001829 ORTHO05D003548 1.7e-17 93.2 120 49.2
Glyma.04G257000 Glycine max HOM05D001829 ORTHO05D003548 2.3e-17 92.8 135 46.7
Sc20g0003300 Simmondsia chinensis HOM05D001829 ORTHO05D003548 3.0e-17 92.4 120 47.5
Gohir.A03G215600 Gossypium hirsutum HOM05D001829 ORTHO05D003548 3.9e-17 92.0 121 52.1
Prupe.1G550000 Prunus persica HOM05D001829 ORTHO05D003548 3.9e-17 92.0 133 46.6
Lj3g0019264 Lotus japonicus HOM05D001829 ORTHO05D003548 5.1e-17 91.7 136 47.1
Lj5C270G4 Lonicera japonica HOM05D001829 ORTHO05D001339 6.6e-17 91.3 114 51.8
Medtr2g005600 Medicago truncatula HOM05D001829 ORTHO05D003548 6.6e-17 91.3 120 52.5
ClCG08G000400 Citrullus lanatus HOM05D001829 ORTHO05D003548 8.7e-17 90.9 134 48.5
Glyma.12G165900 Glycine max HOM05D001829 ORTHO05D003548 8.7e-17 90.9 105 54.3
Psat1g000720 Pisum sativum HOM05D001829 ORTHO05D003548 8.7e-17 90.9 136 47.1
Aqoxy5G00852 Aquilegia oxysepala HOM05D001829 ORTHO05D003548 1.1e-16 90.5 124 46.8
AUR62022364 Chenopodium quinoa HOM05D001829 ORTHO05D003548 1.1e-16 90.5 117 46.2
MELO3C022210.2 Cucumis melo HOM05D001829 ORTHO05D003548 1.1e-16 90.5 134 47.8
Glyma.16G002300 Glycine max HOM05D001829 ORTHO05D003548 1.1e-16 90.5 107 54.2
VMungo0540G0490 Vigna mungo HOM05D001829 ORTHO05D003548 1.1e-16 90.5 119 50.4
CiPaw.03G018900 Carya illinoinensis HOM05D001829 ORTHO05D003548 3.3e-16 89.0 135 44.4
CsaV3_5G040380 Cucumis sativus L. HOM05D001829 ORTHO05D003548 3.3e-16 89.0 134 47.0
TPR.G29252 Trifolium pratense HOM05D001829 ORTHO05D003548 4.3e-16 88.6 120 50.8
Lj6g0013339 Lotus japonicus HOM05D001829 ORTHO05D003548 1.3e-15 87.0 120 52.5
AUR62034338 Chenopodium quinoa HOM05D001829 ORTHO05D003548 2.1e-15 86.3 119 46.2
MD08G1216600 Malus domestica HOM05D001829 ORTHO05D003548 2.8e-15 85.9 135 43.7
Ah.05g168630 Amaranthus hybridus HOM05D001829 ORTHO05D001489 3.6e-15 85.5 122 44.3
Duzib192G0272 Durio zibethinus HOM05D001829 ORTHO05D003548 3.6e-15 85.5 122 46.7
MD15G1403800 Malus domestica HOM05D001829 ORTHO05D003548 3.6e-15 85.5 136 44.1
A05p24170 Brassica napus HOM05D001829 ORTHO05D003548 4.8e-15 85.1 137 42.3
BraA05t21296Z Brassica rapa HOM05D001829 ORTHO05D003548 4.8e-15 85.1 137 42.3
Lalb_Chr15g0090791 Lupinus albus HOM05D001829 ORTHO05D003548 4.8e-15 85.1 120 49.2
TPR.G2074 Trifolium pratense HOM05D001829 ORTHO05D003548 6.2e-15 84.7 107 52.3
Peaxi162Scf00150g01711 Petunia axillaris HOM05D001829 ORTHO05D003548 1.1e-14 84.0 120 48.3
BolC5t32519H Brassica oleracea HOM05D001829 ORTHO05D003548 1.4e-14 83.6 137 41.6
COL.COLO4_30473 Corchorus olitorius HOM05D001829 ORTHO05D003548 1.8e-14 83.2 109 47.7
HanXRQChr09g0249081 Helianthus annuus HOM05D001829 ORTHO05D003548 1.8e-14 83.2 120 50.0
EL10Ac1g01660 Beta vulgaris HOM05D001829 ORTHO05D003548 2.4e-14 82.8 119 46.2
THA.LOC104806760 Tarenaya hassleriana HOM05D001829 ORTHO05D003548 2.4e-14 82.8 111 44.1
Phvul.006G219800 Phaseolus vulgaris HOM05D001829 ORTHO05D003548 5.3e-14 81.6 105 51.4
Thecc.06G095900 Theobroma cacao HOM05D001829 ORTHO05D003548 5.3e-14 81.6 119 45.4
Aa31LG6G8200 Aethionema arabicum HOM05D001829 ORTHO05D003548 9.0e-14 80.9 107 43.9
Gorai.010G229700 Gossypium raimondii HOM05D001829 ORTHO05D003548 9.0e-14 80.9 150 40.7
TWI23G1244 Tripterygium wilfordii HOM05D001829 ORTHO05D003548 9.0e-14 80.9 136 43.4
arahy.Tifrunner.gnm1.ann1.AXP3WA Arachis hypogaea HOM05D001829 ORTHO05D003548 1.2e-13 80.5 119 49.6
Gohir.A06G188800 Gossypium hirsutum HOM05D001829 ORTHO05D003548 2.0e-13 79.7 150 40.0
SHI42178 Sapria himalayana HOM05D001829 ORTHO05D003548 2.0e-13 79.7 129 40.3
Sed0004336 Sechium edule HOM05D001829 ORTHO05D003548 3.4e-13 79.0 123 44.7
arahy.Tifrunner.gnm1.ann1.1V6YFN Arachis hypogaea HOM05D001829 ORTHO05D003548 5.8e-13 78.2 119 48.7
Thhalv10007455m.g Eutrema salsugineum HOM05D001829 ORTHO05D003548 7.6e-13 77.8 109 44.0
THA.LOC104815973 Tarenaya hassleriana HOM05D001829 ORTHO05D003548 7.6e-13 77.8 111 42.3
Gohir.D11G271033 Gossypium hirsutum HOM05D001829 ORTHO05D003548 9.9e-13 77.4 135 41.5
Sed0001549 Sechium edule HOM05D001829 ORTHO05D003548 9.9e-13 77.4 124 45.2
AL1G48420 Arabidopsis lyrata HOM05D001829 ORTHO05D003548 2.9e-12 75.9 120 39.2
Lalb_Chr18g0061071 Lupinus albus HOM05D001829 ORTHO05D003548 2.9e-12 75.9 119 44.5
Ciclev10019695m.g Citrus clementina HOM05D001829 ORTHO05D003548 3.8e-12 75.5 132 43.9
CDE05G1946 Ceratophyllum demersum HOM05D001829 ORTHO05D003548 4.9e-12 75.1 145 39.3
Gohir.D06G197400 Gossypium hirsutum HOM05D001829 ORTHO05D003548 4.9e-12 75.1 134 41.0
CARHR033360 Cardamine hirsuta HOM05D001829 ORTHO05D003548 1.1e-11 73.9 120 37.5
BcaC05g27789 Brassica carinata HOM05D001829 ORTHO05D003548 1.4e-11 73.6 137 38.0
C05p37840 Brassica napus HOM05D001829 ORTHO05D003548 1.4e-11 73.6 137 38.0
BcaB03g13685 Brassica carinata HOM05D001829 ORTHO05D003548 1.9e-11 73.2 111 40.5
HPP92_004491 Vanilla planifolia HOM05D001829 ORTHO05D003548 1.9e-11 73.2 142 35.9
HPP92_004463 Vanilla planifolia HOM05D001829 ORTHO05D003548 3.2e-11 72.4 142 35.9
BcaB07g33017 Brassica carinata HOM05D001829 ORTHO05D003548 4.2e-11 72.0 111 40.5
Carub.0001s3206 Capsella rubella HOM05D001829 ORTHO05D003548 5.4e-11 71.6 120 37.5
Actinidia00172 Actinidia chinensis HOM05D001829 ORTHO05D003548 7.1e-11 71.2 52 71.2
CDE05G3483 Ceratophyllum demersum HOM05D001829 ORTHO05D003548 9.3e-11 70.9 134 40.3
A09p32580 Brassica napus HOM05D001829 ORTHO05D003548 1.6e-10 70.1 111 39.6
BraA09t38799Z Brassica rapa HOM05D001829 ORTHO05D003548 1.6e-10 70.1 107 40.2
BcaC08g43827 Brassica carinata HOM05D001829 ORTHO05D003548 2.1e-10 69.7 111 38.7
BolC6t36349H Brassica oleracea HOM05D001829 ORTHO05D003548 2.1e-10 69.7 111 38.7
Aa31LG9G12070 Aethionema arabicum HOM05D001829 ORTHO05D003548 2.7e-10 69.3 136 33.8
AT1G33980 Arabidopsis thaliana HOM05D001829 ORTHO05D003548 3.5e-10 68.9 120 40.8
BolC8t47884H Brassica oleracea HOM05D001829 ORTHO05D003548 3.5e-10 68.9 121 38.0
unitig_578.g15958 Utricularia gibba HOM05D001829 ORTHO05D003548 4.6e-10 68.6 107 43.0
DCAR_006663 Daucus carota HOM05D001829 ORTHO05D003548 7.9e-10 67.8 133 40.6
Duzib052G1145 Durio zibethinus HOM05D001829 ORTHO05D003548 1.0e-09 67.4 80 52.5
A08p08420 Brassica napus HOM05D001829 ORTHO05D003548 1.3e-09 67.0 121 39.7
unitig_8.g4545 Utricularia gibba HOM05D001829 ORTHO05D003548 1.3e-09 67.0 129 37.2
C06p12110 Brassica napus HOM05D001829 ORTHO05D003548 3.0e-09 65.9 111 37.8
Sp1g29240 Schrenkiella parvula HOM05D001829 ORTHO05D003548 5.1e-09 65.1 121 39.7
Lsat_1_v5_gn_7_76760 Lactuca sativa HOM05D001829 ORTHO05D003548 8.7e-09 64.3 119 42.0
BcaB04g17913 Brassica carinata HOM05D001829 ORTHO05D003548 1.9e-08 63.2 122 38.5
SEGI_14492 Sequoiadendron giganteum HOM05D001829 ORTHO05D003548 4.3e-08 62.0 115 39.1
HanXRQChr03g0067961 Helianthus annuus HOM05D001829 ORTHO05D003548 1.6e-07 60.1 119 40.3
Zm00001eb422950 Zea mays HOM05D001829 ORTHO05D003548 1.6e-07 60.1 105 43.8
HanXRQChr06g0182771 Helianthus annuus HOM05D001829 ORTHO05D003548 3.7e-07 58.9 119 41.2
Potri.019G077500 Populus trichocarpa HOM05D001829 ORTHO05D003548 6.2e-07 58.2 118 37.3
Zm00001eb082220 Zea mays HOM05D001829 ORTHO05D003548 4.0e-06 55.5 116 40.5
Os04g0440100 Oryza sativa ssp. japonica HOM05D001829 ORTHO05D003548 5.3e-06 55.1 119 36.1


User provided reference genes

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